CX043277

Overview
NameCX043277
Unique NameCX043277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_BUCAP (Tryptophan synthase beta chain OS=Buchnera aphidicola subsp. Schizaphis graminum GN=trpB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.742e-27
Identity = 68/155 (43.87%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG+FGG +VP+ L+  L  LE  F    +D+ FQ+     L++Y GR TPL     LT+      G    IYLKREDL H GAHK N  +GQAM+A +M +K I+A TGAGQHGV              ++MG  D+++QS  V  MKL+
Sbjct:    4 LNP-YFGKFGGMYVPQILMPALYQLEKNFVDAKKDSNFQKSFFNYLKNYAGRPTPLTLCNNLTN------GTKTRIYLKREDLLHGGAHKTNQVLGQAMLAVKMKKKEIIAETGAGQHGVAAAIASALFNLKCKIYMGYKDIKRQSPNVFRMKLM 151
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SHISS (Tryptophan synthase beta chain OS=Shigella sonnei (strain Ss046) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SHIFL (Tryptophan synthase beta chain OS=Shigella flexneri GN=trpB PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SHIF8 (Tryptophan synthase beta chain OS=Shigella flexneri serotype 5b (strain 8401) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SHIDS (Tryptophan synthase beta chain OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SHIBS (Tryptophan synthase beta chain OS=Shigella boydii serotype 4 (strain Sb227) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SHIB3 (Tryptophan synthase beta chain OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ESCF3 (Tryptophan synthase beta chain OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ECOUT (Tryptophan synthase beta chain OS=Escherichia coli (strain UTI89 / UPEC) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTKIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ECOSM (Tryptophan synthase beta chain OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
The following BLAST results are available for this feature:
BLAST of CX043277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 425
Match NameE-valueIdentityDescription
TRPB_BUCAP2.742e-2743.87Tryptophan synthase beta chain OS=Buchnera aphidic... [more]
TRPB_SHISS3.582e-2742.58Tryptophan synthase beta chain OS=Shigella sonnei ... [more]
TRPB_SHIFL3.582e-2742.58Tryptophan synthase beta chain OS=Shigella flexner... [more]
TRPB_SHIF83.582e-2742.58Tryptophan synthase beta chain OS=Shigella flexner... [more]
TRPB_SHIDS3.582e-2742.58Tryptophan synthase beta chain OS=Shigella dysente... [more]
TRPB_SHIBS3.582e-2742.58Tryptophan synthase beta chain OS=Shigella boydii ... [more]
TRPB_SHIB33.582e-2742.58Tryptophan synthase beta chain OS=Shigella boydii ... [more]
TRPB_ESCF33.582e-2742.58Tryptophan synthase beta chain OS=Escherichia ferg... [more]
TRPB_ECOUT3.582e-2742.58Tryptophan synthase beta chain OS=Escherichia coli... [more]
TRPB_ECOSM3.582e-2742.58Tryptophan synthase beta chain OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043277 ID=CX043277; Name=CX043277; organism=Citrus sinensis; type=EST; length=796bp
AAACAGGATAACATTTTTATGTATATGTATAGGTGTGTGTGTGTTTAAAG
ATATCACAAGCCAAAATCGTCTCTTAATCGCCACACATACTGCATACAGA
GAAGTGTTTTTGCGCCCACTAACATGGATATTGTTTGCAATAACATAAGT
TTTCAGCTTCCTCACAAATTATCTATTACACGAACGCCATTCACATTCAC
AACAACAAAGAGTCGTACGGGGCCGTACTGCTCTTTACAAAAGTACTCGA
CCTCGAGTCCCATTATGAGAAAGCCTTTGATAAACAGCTTATTACCTAAA
ACTGATCATGATCATCGTGAGTACTGGAAACTCAATCCAGGAAAATTTGG
GAGATTTGGAGGAAAGTTTGTGCCTGAGACACTAATCACTTGTTTGAGCC
TACTTGAAGCTGAATTCAACTTTGTTTTGCAGGATACTAAGTTTCAGGAG
GAGCTGTCGACTGCATTAAGAGACTATGTAGGACGGGAGACGCCTCTTTA
TTTTGCTGAGAGGCTGACAGATCATTACAGGAACGAAAAGGGAGAAGGGC
CAGAGATTTATCTGAAAAGAGAAGATCTCAACCATGTGGGTGCACACAAG
ATCAACAACGCCATAGGACAGGCAATGATAGCCAAGCGCATGGGCCGGAA
AAGTATTGTCGCGGCCACCGGTGCTGGACAGCATGGCGTCGCTACAGCTG
CTGCATGCGCAAAACTGGCTTTGGACTGTACTGTGTTCATGGGCACCGCT
GATATGGAGAAACAATCCTCTAAAGTGCTCCTAATGAAGCTACTAG
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