CX043277

Overview
NameCX043277
Unique NameCX043277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ECOSE (Tryptophan synthase beta chain OS=Escherichia coli (strain SE11) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ECOLI (Tryptophan synthase beta chain OS=Escherichia coli (strain K12) GN=trpB PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ECOLC (Tryptophan synthase beta chain OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ECOL6 (Tryptophan synthase beta chain OS=Escherichia coli O6 GN=trpB PE=3 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ECOL5 (Tryptophan synthase beta chain OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ECOK1 (Tryptophan synthase beta chain OS=Escherichia coli O1:K1 / APEC GN=trpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTKIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ECOHS (Tryptophan synthase beta chain OS=Escherichia coli O9:H4 (strain HS) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ECODH (Tryptophan synthase beta chain OS=Escherichia coli (strain K12 / DH10B) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ECO8A (Tryptophan synthase beta chain OS=Escherichia coli O8 (strain IAI1) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ECO81 (Tryptophan synthase beta chain OS=Escherichia coli O81 (strain ED1a) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
The following BLAST results are available for this feature:
BLAST of CX043277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 425
Match NameE-valueIdentityDescription
TRPB_ECOSE3.582e-2742.58Tryptophan synthase beta chain OS=Escherichia coli... [more]
TRPB_ECOLI3.582e-2742.58Tryptophan synthase beta chain OS=Escherichia coli... [more]
TRPB_ECOLC3.582e-2742.58Tryptophan synthase beta chain OS=Escherichia coli... [more]
TRPB_ECOL63.582e-2742.58Tryptophan synthase beta chain OS=Escherichia coli... [more]
TRPB_ECOL53.582e-2742.58Tryptophan synthase beta chain OS=Escherichia coli... [more]
TRPB_ECOK13.582e-2742.58Tryptophan synthase beta chain OS=Escherichia coli... [more]
TRPB_ECOHS3.582e-2742.58Tryptophan synthase beta chain OS=Escherichia coli... [more]
TRPB_ECODH3.582e-2742.58Tryptophan synthase beta chain OS=Escherichia coli... [more]
TRPB_ECO8A3.582e-2742.58Tryptophan synthase beta chain OS=Escherichia coli... [more]
TRPB_ECO813.582e-2742.58Tryptophan synthase beta chain OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043277 ID=CX043277; Name=CX043277; organism=Citrus sinensis; type=EST; length=796bp
AAACAGGATAACATTTTTATGTATATGTATAGGTGTGTGTGTGTTTAAAG
ATATCACAAGCCAAAATCGTCTCTTAATCGCCACACATACTGCATACAGA
GAAGTGTTTTTGCGCCCACTAACATGGATATTGTTTGCAATAACATAAGT
TTTCAGCTTCCTCACAAATTATCTATTACACGAACGCCATTCACATTCAC
AACAACAAAGAGTCGTACGGGGCCGTACTGCTCTTTACAAAAGTACTCGA
CCTCGAGTCCCATTATGAGAAAGCCTTTGATAAACAGCTTATTACCTAAA
ACTGATCATGATCATCGTGAGTACTGGAAACTCAATCCAGGAAAATTTGG
GAGATTTGGAGGAAAGTTTGTGCCTGAGACACTAATCACTTGTTTGAGCC
TACTTGAAGCTGAATTCAACTTTGTTTTGCAGGATACTAAGTTTCAGGAG
GAGCTGTCGACTGCATTAAGAGACTATGTAGGACGGGAGACGCCTCTTTA
TTTTGCTGAGAGGCTGACAGATCATTACAGGAACGAAAAGGGAGAAGGGC
CAGAGATTTATCTGAAAAGAGAAGATCTCAACCATGTGGGTGCACACAAG
ATCAACAACGCCATAGGACAGGCAATGATAGCCAAGCGCATGGGCCGGAA
AAGTATTGTCGCGGCCACCGGTGCTGGACAGCATGGCGTCGCTACAGCTG
CTGCATGCGCAAAACTGGCTTTGGACTGTACTGTGTTCATGGGCACCGCT
GATATGGAGAAACAATCCTCTAAAGTGCTCCTAATGAAGCTACTAG
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