CX043277

Overview
NameCX043277
Unique NameCX043277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ECO7I (Tryptophan synthase beta chain OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ECO5E (Tryptophan synthase beta chain OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ECO57 (Tryptophan synthase beta chain OS=Escherichia coli O157:H7 GN=trpB PE=3 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ECO55 (Tryptophan synthase beta chain OS=Escherichia coli (strain 55989 / EAEC) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ECO45 (Tryptophan synthase beta chain OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTKIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ECO27 (Tryptophan synthase beta chain OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ECO24 (Tryptophan synthase beta chain OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=trpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNIT------AGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SHEWM (Tryptophan synthase beta chain OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=trpB PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.678e-27
Identity = 68/156 (43.59%), Postives = 90/156 (57.69%), Query Frame = 1 
Query:  328 KLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            KL+P  FG +GG +VP+ L+  L  LE  F    +D  F+ E +  L++Y GR T L     L+ +         +IYLKREDL H GAHK N  +GQA++AKRMG+K I+A TGAGQHGV              V+MG  D+E+QS  V  MKL+
Sbjct:    3 KLDP-YFGEYGGMYVPQILMPALKQLETAFVEAQEDEAFKTEFNDLLKNYAGRPTALTLTRNLSPNPL------VKIYLKREDLLHGGAHKTNQVLGQALLAKRMGKKEIIAETGAGQHGVATALACALLDLKCKVYMGAKDVERQSPNVFRMKLM 151
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SALAR (Tryptophan synthase beta chain OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=trpB PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.678e-27
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VP+ L+  L  LE  F    +D +FQ + +  L++Y GR T L   + +T       G    +YLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D+E+QS  V  M+L+
Sbjct:    5 LNP-YFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNIT------AGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 152
[Close]
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PSEA6 (Tryptophan synthase beta chain OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=trpB PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.678e-27
Identity = 63/151 (41.72%), Postives = 85/151 (56.29%), Query Frame = 1 
Query:  343 KFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            KFG+FGG +VPE LI  L  LE  F     D +FQ+E    L DY GR T +  +  L  +         ++YLKREDL H GAHK N  +GQA++ KRMG+  ++A TGAGQHGV              ++MG  D+E+Q+  V  M+L+
Sbjct:    7 KFGQFGGMYVPELLIPALDQLEQAFIDAQNDPEFQKEFMELLTDYAGRPTAMTLSRNLVSN------PNVKLYLKREDLLHGGAHKTNQVLGQALLTKRMGKTEVIAETGAGQHGVATALACALLGLKARIYMGAKDVERQAPNVFRMRLM 151
The following BLAST results are available for this feature:
BLAST of CX043277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 425
Match NameE-valueIdentityDescription
TRPB_ECO7I3.582e-2742.58Tryptophan synthase beta chain OS=Escherichia coli... [more]
TRPB_ECO5E3.582e-2742.58Tryptophan synthase beta chain OS=Escherichia coli... [more]
TRPB_ECO573.582e-2742.58Tryptophan synthase beta chain OS=Escherichia coli... [more]
TRPB_ECO553.582e-2742.58Tryptophan synthase beta chain OS=Escherichia coli... [more]
TRPB_ECO453.582e-2742.58Tryptophan synthase beta chain OS=Escherichia coli... [more]
TRPB_ECO273.582e-2742.58Tryptophan synthase beta chain OS=Escherichia coli... [more]
TRPB_ECO243.582e-2742.58Tryptophan synthase beta chain OS=Escherichia coli... [more]
TRPB_SHEWM4.678e-2743.59Tryptophan synthase beta chain OS=Shewanella woody... [more]
TRPB_SALAR4.678e-2742.58Tryptophan synthase beta chain OS=Salmonella arizo... [more]
TRPB_PSEA64.678e-2741.72Tryptophan synthase beta chain OS=Pseudoalteromona... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043277 ID=CX043277; Name=CX043277; organism=Citrus sinensis; type=EST; length=796bp
AAACAGGATAACATTTTTATGTATATGTATAGGTGTGTGTGTGTTTAAAG
ATATCACAAGCCAAAATCGTCTCTTAATCGCCACACATACTGCATACAGA
GAAGTGTTTTTGCGCCCACTAACATGGATATTGTTTGCAATAACATAAGT
TTTCAGCTTCCTCACAAATTATCTATTACACGAACGCCATTCACATTCAC
AACAACAAAGAGTCGTACGGGGCCGTACTGCTCTTTACAAAAGTACTCGA
CCTCGAGTCCCATTATGAGAAAGCCTTTGATAAACAGCTTATTACCTAAA
ACTGATCATGATCATCGTGAGTACTGGAAACTCAATCCAGGAAAATTTGG
GAGATTTGGAGGAAAGTTTGTGCCTGAGACACTAATCACTTGTTTGAGCC
TACTTGAAGCTGAATTCAACTTTGTTTTGCAGGATACTAAGTTTCAGGAG
GAGCTGTCGACTGCATTAAGAGACTATGTAGGACGGGAGACGCCTCTTTA
TTTTGCTGAGAGGCTGACAGATCATTACAGGAACGAAAAGGGAGAAGGGC
CAGAGATTTATCTGAAAAGAGAAGATCTCAACCATGTGGGTGCACACAAG
ATCAACAACGCCATAGGACAGGCAATGATAGCCAAGCGCATGGGCCGGAA
AAGTATTGTCGCGGCCACCGGTGCTGGACAGCATGGCGTCGCTACAGCTG
CTGCATGCGCAAAACTGGCTTTGGACTGTACTGTGTTCATGGGCACCGCT
GATATGGAGAAACAATCCTCTAAAGTGCTCCTAATGAAGCTACTAG
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