CX043277

Overview
NameCX043277
Unique NameCX043277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_HAEI8 (Tryptophan synthase beta chain OS=Haemophilus influenzae (strain 86-028NP) GN=trpB PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.678e-27
Identity = 69/155 (44.52%), Postives = 86/155 (55.48%), Query Frame = 1
Query:  331 LNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            LNP  FG FGG +VPE L+  L  LE  F     D  FQ E +  L++Y GR T L     LT      K    ++YLKREDL H GAHK N  +GQ ++AKRMG+  I+A TGAGQHGV              V+MG  D+E+QS  V  M+L+
Sbjct:    6 LNP-YFGEFGGMYVPEILVPVLKQLEQAFVEAQNDPTFQAEFADLLKNYAGRPTALTLCRNLT------KCTKTKLYLKREDLLHGGAHKTNQVLGQILLAKRMGKTRIIAETGAGQHGVATALACAMLDMPCRVYMGAKDVERQSPNVFRMRLM 153          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_TOLAT (Tryptophan synthase beta chain OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=trpB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.109e-27
Identity = 66/150 (44.00%), Postives = 82/150 (54.67%), Query Frame = 1
Query:  346 FGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            FG FGG + P+ L+  L  LE  F     D +FQ E    L +Y GR TPL     LT      KG   +IYLKREDL H GAHK N  +GQA++AKRMG+  I+A TGAGQHGV              ++MG  D E+Q   V  M+L+
Sbjct:    8 FGEFGGMYSPQILMPVLLELEKAFVDAKDDPEFQAEFQHLLTEYAGRPTPLTLCRNLT------KGTKTKIYLKREDLLHGGAHKTNQVLGQALLAKRMGKTRIIAETGAGQHGVATALACALLDLPCRIYMGAVDCERQKPNVFRMRLM 151          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SHESW (Tryptophan synthase beta chain OS=Shewanella sp. (strain W3-18-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.109e-27
Identity = 67/156 (42.95%), Postives = 89/156 (57.05%), Query Frame = 1
Query:  328 KLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            KLNP  FG +GG +VP+ L+  L  LE  F    +D  F+ E +  L++Y GR T L     L+ +         +IYLKREDL H GAHK N  +GQA++AKRMG+K I+A TGAGQHGV              V+MG  D+ +QS  V  M+L+
Sbjct:    5 KLNP-YFGEYGGMYVPQILVPALKQLETAFVEAQEDDDFKAEFTDLLKNYAGRPTALTLTRNLSPNPM------VKIYLKREDLLHGGAHKTNQVLGQALLAKRMGKKEIIAETGAGQHGVATALACALLGLKCKVYMGAKDVARQSPNVFRMRLM 153          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SHESR (Tryptophan synthase beta chain OS=Shewanella sp. (strain MR-7) GN=trpB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.109e-27
Identity = 68/156 (43.59%), Postives = 88/156 (56.41%), Query Frame = 1
Query:  328 KLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            KLNP  FG +GG +VP+ L+  L  LE  F     D  FQ E +  L++Y GR T L     L+ +         +IYLKREDL H GAHK N  +GQA++AKRMG+K I+A TGAGQHGV              V+MG  D+ +QS  V  M+L+
Sbjct:    5 KLNP-YFGEYGGMYVPQILVPALKQLENAFVEAQADESFQAEFTDLLKNYAGRPTALTLTRNLSPNPM------VKIYLKREDLLHGGAHKTNQVLGQALLAKRMGKKEIIAETGAGQHGVATALACALLGLKCKVYMGAKDVARQSPNVFRMRLM 153          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SHESM (Tryptophan synthase beta chain OS=Shewanella sp. (strain MR-4) GN=trpB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.109e-27
Identity = 68/156 (43.59%), Postives = 88/156 (56.41%), Query Frame = 1
Query:  328 KLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            KLNP  FG +GG +VP+ L+  L  LE  F     D  FQ E +  L++Y GR T L     L+ +         +IYLKREDL H GAHK N  +GQA++AKRMG+K I+A TGAGQHGV              V+MG  D+ +QS  V  M+L+
Sbjct:    5 KLNP-YFGEYGGMYVPQILVPALKQLENAFVEAQADESFQAEFTDLLKNYAGRPTALTLTRNLSPNPM------VKIYLKREDLLHGGAHKTNQVLGQALLAKRMGKKEIIAETGAGQHGVATALACALLGLKCKVYMGAKDVARQSPNVFRMRLM 153          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SHESA (Tryptophan synthase beta chain OS=Shewanella sp. (strain ANA-3) GN=trpB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.109e-27
Identity = 68/156 (43.59%), Postives = 88/156 (56.41%), Query Frame = 1
Query:  328 KLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            KLNP  FG +GG +VP+ L+  L  LE  F     D  FQ E +  L++Y GR T L     L+ +         +IYLKREDL H GAHK N  +GQA++AKRMG+K I+A TGAGQHGV              V+MG  D+ +QS  V  M+L+
Sbjct:    5 KLNP-YFGEYGGMYVPQILVPALKQLENAFVEAQADESFQAEFTDLLKNYAGRPTALTLTRNLSPNPM------VKIYLKREDLLHGGAHKTNQVLGQALLAKRMGKKEIIAETGAGQHGVATALACALLGLKCKVYMGAKDVARQSPNVFRMRLM 153          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SHEPC (Tryptophan synthase beta chain OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=trpB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.109e-27
Identity = 67/156 (42.95%), Postives = 89/156 (57.05%), Query Frame = 1
Query:  328 KLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            KLNP  FG +GG +VP+ L+  L  LE  F    +D  F+ E +  L++Y GR T L     L+ +         +IYLKREDL H GAHK N  +GQA++AKRMG+K I+A TGAGQHGV              V+MG  D+ +QS  V  M+L+
Sbjct:    5 KLNP-YFGEYGGMYVPQILVPALKQLETAFVEAQEDEDFKAEFTDLLKNYAGRPTALTLTRNLSPNPM------VKIYLKREDLLHGGAHKTNQVLGQALLAKRMGKKEIIAETGAGQHGVATALACALLGLKCKVYMGAKDVARQSPNVFRMRLM 153          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SHEB9 (Tryptophan synthase beta chain OS=Shewanella baltica (strain OS195) GN=trpB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.109e-27
Identity = 67/156 (42.95%), Postives = 89/156 (57.05%), Query Frame = 1
Query:  328 KLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            KLNP  FG +GG +VP+ L+  L  LE  F    +D  F+ E +  L++Y GR T L     L+ +         +IYLKREDL H GAHK N  +GQA++AKRMG+K I+A TGAGQHGV              V+MG  D+ +QS  V  M+L+
Sbjct:    5 KLNP-YFGEYGGMYVPQILVPALKQLETAFVEAQEDDDFKAEFTDLLKNYAGRPTALTLTRNLSPNPM------VKIYLKREDLLHGGAHKTNQVLGQALLAKRMGKKEIIAETGAGQHGVATALACALLGLKCKVYMGAKDVARQSPNVFRMRLM 153          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SHEB8 (Tryptophan synthase beta chain OS=Shewanella baltica (strain OS185) GN=trpB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.109e-27
Identity = 67/156 (42.95%), Postives = 89/156 (57.05%), Query Frame = 1
Query:  328 KLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            KLNP  FG +GG +VP+ L+  L  LE  F    +D  F+ E +  L++Y GR T L     L+ +         +IYLKREDL H GAHK N  +GQA++AKRMG+K I+A TGAGQHGV              V+MG  D+ +QS  V  M+L+
Sbjct:    5 KLNP-YFGEYGGMYVPQILVPALKQLETAFVEAQEDDDFKAEFTDLLKNYAGRPTALTLTRNLSPNPM------VKIYLKREDLLHGGAHKTNQVLGQALLAKRMGKKEIIAETGAGQHGVATALACALLGLKCKVYMGAKDVARQSPNVFRMRLM 153          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SHEB5 (Tryptophan synthase beta chain OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=trpB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.109e-27
Identity = 67/156 (42.95%), Postives = 89/156 (57.05%), Query Frame = 1
Query:  328 KLNPGKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            KLNP  FG +GG +VP+ L+  L  LE  F    +D  F+ E +  L++Y GR T L     L+ +         +IYLKREDL H GAHK N  +GQA++AKRMG+K I+A TGAGQHGV              V+MG  D+ +QS  V  M+L+
Sbjct:    5 KLNP-YFGEYGGMYVPQILVPALKQLETAFVEAQEDDDFKAEFTDLLKNYAGRPTALTLTRNLSPNPM------VKIYLKREDLLHGGAHKTNQVLGQALLAKRMGKKEIIAETGAGQHGVATALACALLGLKCKVYMGAKDVARQSPNVFRMRLM 153          
The following BLAST results are available for this feature:
BLAST of CX043277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 425
Match NameE-valueIdentityDescription
TRPB_HAEI84.678e-2744.52Tryptophan synthase beta chain OS=Haemophilus infl... [more]
TRPB_TOLAT6.109e-2744.00Tryptophan synthase beta chain OS=Tolumonas auensi... [more]
TRPB_SHESW6.109e-2742.95Tryptophan synthase beta chain OS=Shewanella sp. (... [more]
TRPB_SHESR6.109e-2743.59Tryptophan synthase beta chain OS=Shewanella sp. (... [more]
TRPB_SHESM6.109e-2743.59Tryptophan synthase beta chain OS=Shewanella sp. (... [more]
TRPB_SHESA6.109e-2743.59Tryptophan synthase beta chain OS=Shewanella sp. (... [more]
TRPB_SHEPC6.109e-2742.95Tryptophan synthase beta chain OS=Shewanella putre... [more]
TRPB_SHEB96.109e-2742.95Tryptophan synthase beta chain OS=Shewanella balti... [more]
TRPB_SHEB86.109e-2742.95Tryptophan synthase beta chain OS=Shewanella balti... [more]
TRPB_SHEB56.109e-2742.95Tryptophan synthase beta chain OS=Shewanella balti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043277 ID=CX043277; Name=CX043277; organism=Citrus sinensis; type=EST; length=796bp
AAACAGGATAACATTTTTATGTATATGTATAGGTGTGTGTGTGTTTAAAG
ATATCACAAGCCAAAATCGTCTCTTAATCGCCACACATACTGCATACAGA
GAAGTGTTTTTGCGCCCACTAACATGGATATTGTTTGCAATAACATAAGT
TTTCAGCTTCCTCACAAATTATCTATTACACGAACGCCATTCACATTCAC
AACAACAAAGAGTCGTACGGGGCCGTACTGCTCTTTACAAAAGTACTCGA
CCTCGAGTCCCATTATGAGAAAGCCTTTGATAAACAGCTTATTACCTAAA
ACTGATCATGATCATCGTGAGTACTGGAAACTCAATCCAGGAAAATTTGG
GAGATTTGGAGGAAAGTTTGTGCCTGAGACACTAATCACTTGTTTGAGCC
TACTTGAAGCTGAATTCAACTTTGTTTTGCAGGATACTAAGTTTCAGGAG
GAGCTGTCGACTGCATTAAGAGACTATGTAGGACGGGAGACGCCTCTTTA
TTTTGCTGAGAGGCTGACAGATCATTACAGGAACGAAAAGGGAGAAGGGC
CAGAGATTTATCTGAAAAGAGAAGATCTCAACCATGTGGGTGCACACAAG
ATCAACAACGCCATAGGACAGGCAATGATAGCCAAGCGCATGGGCCGGAA
AAGTATTGTCGCGGCCACCGGTGCTGGACAGCATGGCGTCGCTACAGCTG
CTGCATGCGCAAAACTGGCTTTGGACTGTACTGTGTTCATGGGCACCGCT
GATATGGAGAAACAATCCTCTAAAGTGCTCCTAATGAAGCTACTAG
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