CX043277

Overview
NameCX043277
Unique NameCX043277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043277_ssr33 microsatellite CX043277_ssr33:33..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3563 contig Csv1_Contig3563:1..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_MYCLE (Tryptophan synthase beta chain OS=Mycobacterium leprae GN=trpB PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.078e-23
Identity = 59/155 (38.06%), Postives = 89/155 (57.42%), Query Frame = 1
Query:  340 GKFGR---FGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG    +GG++VPE L+  +  + A +     +  F + L     +Y GR +PLY A RL+++  + +     I+LKREDLNH G+HKINN +GQ ++A+RMG+  ++A TGAGQHGV              ++MG  D  +Q+  V  M+LL
Sbjct:   24 GHFGGPDGYGGRYVPEALMAVIEEVTAAYEKERVNQDFLDLLDKLQANYAGRPSPLYEATRLSEYAGSVR-----IFLKREDLNHTGSHKINNVLGQTLLAQRMGKTRVIAETGAGQHGVATATACALFGLDCVIYMGALDTARQALNVARMRLL 173          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_HALSA (Tryptophan synthase beta chain OS=Halobacterium salinarium GN=trpB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.840e-23
Identity = 61/153 (39.87%), Postives = 87/153 (56.86%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLS-LLEAEFNFVLQDTK-FQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKL 792
            G FG +GG++VPE L+  +  L +A   +VL +   F ++    +R + GR TPL  A  L+  +      G ++YLKREDL H GAHK+NNA+GQ ++AK MG+  IVA TGAGQHG               ++MG  D+ +Q   V  M+L
Sbjct:   13 GTFGDYGGQYVPEVLMPAVEELTDAYERYVLDNEDGFVDDFRQRIRSFGGRPTPLTHAPTLSQRH------GVDVYLKREDLLHGGAHKLNNALGQVLLAKYMGKDRIVAETGAGQHGTATAMACAALEMPCEIYMGRTDVNRQRPNVFRMRL 159          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_HALS3 (Tryptophan synthase beta chain OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=trpB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.840e-23
Identity = 61/153 (39.87%), Postives = 87/153 (56.86%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLS-LLEAEFNFVLQDTK-FQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKL 792
            G FG +GG++VPE L+  +  L +A   +VL +   F ++    +R + GR TPL  A  L+  +      G ++YLKREDL H GAHK+NNA+GQ ++AK MG+  IVA TGAGQHG               ++MG  D+ +Q   V  M+L
Sbjct:   13 GTFGDYGGQYVPEVLMPAVEELTDAYERYVLDNEDGFVDDFRQRIRSFGGRPTPLTHAPTLSQRH------GVDVYLKREDLLHGGAHKLNNALGQVLLAKYMGKDRIVAETGAGQHGTATAMACAALEMPCEIYMGRTDVNRQRPNVFRMRL 159          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_HELHP (Tryptophan synthase beta chain OS=Helicobacter hepaticus GN=trpB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.098e-23
Identity = 56/146 (38.36%), Postives = 84/146 (57.53%), Query Frame = 1
Query:  355 FGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKL 792
            FGG+++PE L+  L  LE  ++ V     +++EL +  + +VGR TPL +A   +   +N+      IYLK E L + GAHKINNA+GQ ++AK M +K ++A TGAGQHG+              +FMG  D+ +Q   V  M+L
Sbjct:   24 FGGQYIPEILLPALKELEKAYHGVFVSKAYKKELKSLFKHFVGRPTPLIYAHNASKILKND------IYLKFEGLANTGAHKINNALGQVLLAKHMKKKRVIAETGAGQHGLATAAACARLGLECEIFMGEIDIARQRPNVFNMEL 163          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB1_CHLCV (Tryptophan synthase beta chain 1 OS=Chlamydophila caviae GN=trpB1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.557e-22
Identity = 57/147 (38.78%), Postives = 82/147 (55.78%), Query Frame = 1
Query:  355 FGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            +GG++VP  L+  L  L+  +  + +D +F+E     L++Y GR TPL   +  +         GP I+LKREDL H GAHKINN +GQ +IAK  G+  +VA TGAGQHGV              +FMG  D+ +Q   V  +++L
Sbjct:   27 YGGQYVPLELVKPLEDLDRSYEQLKKDPQFRETFHHILKNYAGRPTPLTEVKNFSRAIN-----GPRIFLKREDLLHTGAHKINNVLGQCLIAKFQGKTRVVAETGAGQHGVALAAAAAYLGMECVIFMGETDINRQKPNVDRIRVL 168          
The following BLAST results are available for this feature:
BLAST of CX043277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 425
Match NameE-valueIdentityDescription
TRPB_MYCLE1.078e-2338.06Tryptophan synthase beta chain OS=Mycobacterium le... [more]
TRPB_HALSA1.840e-2339.87Tryptophan synthase beta chain OS=Halobacterium sa... [more]
TRPB_HALS31.840e-2339.87Tryptophan synthase beta chain OS=Halobacterium sa... [more]
TRPB_HELHP4.098e-2338.36Tryptophan synthase beta chain OS=Helicobacter hep... [more]
TRPB1_CHLCV1.557e-2238.78Tryptophan synthase beta chain 1 OS=Chlamydophila ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043277 ID=CX043277; Name=CX043277; organism=Citrus sinensis; type=EST; length=796bp
AAACAGGATAACATTTTTATGTATATGTATAGGTGTGTGTGTGTTTAAAG
ATATCACAAGCCAAAATCGTCTCTTAATCGCCACACATACTGCATACAGA
GAAGTGTTTTTGCGCCCACTAACATGGATATTGTTTGCAATAACATAAGT
TTTCAGCTTCCTCACAAATTATCTATTACACGAACGCCATTCACATTCAC
AACAACAAAGAGTCGTACGGGGCCGTACTGCTCTTTACAAAAGTACTCGA
CCTCGAGTCCCATTATGAGAAAGCCTTTGATAAACAGCTTATTACCTAAA
ACTGATCATGATCATCGTGAGTACTGGAAACTCAATCCAGGAAAATTTGG
GAGATTTGGAGGAAAGTTTGTGCCTGAGACACTAATCACTTGTTTGAGCC
TACTTGAAGCTGAATTCAACTTTGTTTTGCAGGATACTAAGTTTCAGGAG
GAGCTGTCGACTGCATTAAGAGACTATGTAGGACGGGAGACGCCTCTTTA
TTTTGCTGAGAGGCTGACAGATCATTACAGGAACGAAAAGGGAGAAGGGC
CAGAGATTTATCTGAAAAGAGAAGATCTCAACCATGTGGGTGCACACAAG
ATCAACAACGCCATAGGACAGGCAATGATAGCCAAGCGCATGGGCCGGAA
AAGTATTGTCGCGGCCACCGGTGCTGGACAGCATGGCGTCGCTACAGCTG
CTGCATGCGCAAAACTGGCTTTGGACTGTACTGTGTTCATGGGCACCGCT
GATATGGAGAAACAATCCTCTAAAGTGCTCCTAATGAAGCTACTAG
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