CX043277

Overview
NameCX043277
Unique NameCX043277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043277_ssr33 microsatellite CX043277_ssr33:33..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3563 contig Csv1_Contig3563:1..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_THEP3 (Tryptophan synthase beta chain OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=trpB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.475e-36
Identity = 78/152 (51.32%), Postives = 99/152 (65.13%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FGRFGG++VPET++  L  LE EF    +D  F EE    LR+Y GR TPLY+AE LT     ++  G +IYLKREDLNH GAHKINN +GQ ++AKRM +K ++A TGAGQHGV              +FMG  D+++QS  V  MKLL
Sbjct:    3 GRFGRFGGQYVPETVMNALIELEREFEKAKEDKDFMEEYRYYLREYSGRPTPLYYAENLT-----KRLGGAKIYLKREDLNHTGAHKINNVLGQILLAKRMNKKRVIAETGAGQHGVATATAAAMFGMECEIFMGEEDIKRQSLNVFRMKLL 149          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PROM5 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9515) GN=trpB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.475e-36
Identity = 77/152 (50.66%), Postives = 105/152 (69.08%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FG++GG++VPETL+  L  LE   +   +D +F +EL+  L+ YVGRETPLY A+RLT+HY+ +      I+LKREDLNH GAHKINNA+GQA++A RMG++ I+A TGAGQHGV              ++MG  D+++QS  V  MKLL
Sbjct:   24 GRFGKYGGQYVPETLMPALFELEKAASDAWKDKQFVDELNHLLKTYVGRETPLYEAKRLTEHYQTKTCTS-RIWLKREDLNHTGAHKINNALGQALLAIRMGKERIIAETGAGQHGVATATVCARFGLKCIIYMGAEDIKRQSLNVFRMKLL 174          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PSEF5 (Tryptophan synthase beta chain OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=trpB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.200e-36
Identity = 77/152 (50.66%), Postives = 100/152 (65.79%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG FGG++V ETL+  +  L  E+    +D +F +EL+   RDYVGR +PLYFAERLT+H       G +IYLKRE+LNH GAHKINN IGQ ++A+RMG+K I+A TGAG HGV              ++MGT D+E+Q + V  MKLL
Sbjct:   14 GLFGAFGGRYVAETLMPLILDLAREYEKAKEDPEFLKELAYFQRDYVGRPSPLYFAERLTEHCG-----GAKIYLKREELNHTGAHKINNCIGQILLARRMGKKRIIAETGAGMHGVATATVAARFGLDCVIYMGTTDIERQQANVFRMKLL 160          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_BACC7 (Tryptophan synthase beta chain OS=Bacillus cereus (strain AH187) GN=trpB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.200e-36
Identity = 76/152 (50.00%), Postives = 101/152 (66.45%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G +GG++VPETL+  +  LE  +   ++D +FQ+EL+  L+ YVGRETPLYFAE +T++       G +IYLKREDLNH GAHKINN IGQA++A RMG+K +VA TGAGQHGV              +FMG  D+ +Q   V  M+LL
Sbjct:   10 GHYGIYGGRYVPETLMQSVLELEEAYKEAMEDEEFQKELNHYLKTYVGRETPLYFAENMTEYCG-----GAKIYLKREDLNHTGAHKINNTIGQALLAVRMGKKKVVAETGAGQHGVATATVCALLGLECVIFMGEEDVRRQKLNVFRMELL 156          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_BACC4 (Tryptophan synthase beta chain OS=Bacillus cereus (strain B4264) GN=trpB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.200e-36
Identity = 78/152 (51.32%), Postives = 99/152 (65.13%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G +GG++VPETL+  +  LE  +   +QD  FQ+EL+  L+ YVGRETPLYFAE LT +       G +IYLKREDLNH GAHKINN IGQA++A RMG+K +VA TGAGQHGV              +FMG  D+ +Q   V  M+LL
Sbjct:   10 GHYGIYGGRYVPETLMQSVLELEEAYKEAMQDEAFQKELNHYLKTYVGRETPLYFAENLTKYCG-----GAKIYLKREDLNHTGAHKINNTIGQALLAVRMGKKKVVAETGAGQHGVATATVCALLGLECVIFMGEEDVRRQKLNVFRMELL 156          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_RHOPB (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris (strain BisB18) GN=trpB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.404e-36
Identity = 76/152 (50.00%), Postives = 97/152 (63.82%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG FGG+FV ETL+  +  LE  +     D  FQ E+   L+DYVGR +PLYFAERLTDH       G +IY KRE+LNH G+HK+NN +GQ M+A+RMG+K I+A TGAGQHGV              VFMG  D+E+Q   V+ M++L
Sbjct:   17 GHFGIFGGRFVAETLMPLILDLEKAYAGAKADPSFQREMDGYLKDYVGRPSPLYFAERLTDHLG-----GAKIYFKREELNHTGSHKVNNVLGQIMVARRMGKKRIIAETGAGQHGVATATLCARFGLECIVFMGAVDVERQQPNVIRMQML 163          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_METJA (Tryptophan synthase beta chain OS=Methanocaldococcus jannaschii GN=trpB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.404e-36
Identity = 76/154 (49.35%), Postives = 103/154 (66.88%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFN--FVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            GKFG +GGKFVPETL+  ++ LE  F   ++  +  F+EE    LRDYVGR TPLY+AERL++        G ++YLKREDL H+GAHKINNA+GQA++AK+MG+K ++A TGAGQHGV              ++MG  D+E+Q   V  M+L+
Sbjct:   16 GKFGIYGGKFVPETLMPAIAELEEAFKRFWINNEGNFREEFYALLRDYVGRPTPLYYAERLSEEL------GCKVYLKREDLAHLGAHKINNALGQALLAKKMGKKRVIAETGAGQHGVATAAACAKLGLECIIYMGAKDVERQKLNVFRMELM 163          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_GEOTN (Tryptophan synthase beta chain OS=Geobacillus thermodenitrificans (strain NG80-2) GN=trpB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.404e-36
Identity = 81/152 (53.29%), Postives = 96/152 (63.16%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FG FGGKFVPETL+  L  +E E +  L D  F++E    L+ Y GR TPL FA  LT         G +IYLKREDLNH GAHKINNAIGQA++AKRMG+K ++A TGAGQHGV              VFMG  DM++Q   V  MKLL
Sbjct:    9 GRFGDFGGKFVPETLMLPLEEIETELDKALADESFRQEYIRILQHYSGRPTPLTFAPNLTRQLG-----GAKIYLKREDLNHTGAHKINNAIGQALLAKRMGKKKLIAETGAGQHGVAAATVAAHFGMECIVFMGEEDMKRQELNVFRMKLL 155          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_PSESY (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. syringae GN=trpB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.228e-35
Identity = 77/152 (50.66%), Postives = 99/152 (65.13%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G FG FGG++V ETL+  +  L  E+    +D  F+EEL+   RDYVGR +PLYFAERLT+        G +IYLKRE+LNH GAHKINN IGQ ++A+RMG+K I+A TGAG HGV              ++MGT D+E+Q + V  MKLL
Sbjct:   16 GMFGAFGGRYVAETLMPLILDLAREYEAAKEDPAFKEELAYFQRDYVGRPSPLYFAERLTEFCG-----GAKIYLKREELNHTGAHKINNCIGQILLARRMGKKRIIAETGAGMHGVATATVAARFGLQCVIYMGTTDIERQQANVFRMKLL 162          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_BACHK (Tryptophan synthase beta chain OS=Bacillus thuringiensis subsp. konkukian GN=trpB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.228e-35
Identity = 76/152 (50.00%), Postives = 100/152 (65.79%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G +G +GG++VPETL+  +  LE  +   ++D  FQ+EL+  L+ YVGRETPLYFAE +T++       G +IYLKREDLNH GAHKINN IGQA++A RMG+K +VA TGAGQHGV              +FMG  D+ +Q   V  M+LL
Sbjct:   10 GHYGIYGGRYVPETLMQSVLELEEAYKEAMEDEAFQKELNHYLKTYVGRETPLYFAENMTEYCG-----GAKIYLKREDLNHTGAHKINNTIGQALLAVRMGKKKVVAETGAGQHGVATATVCALLGLECVIFMGEEDVRRQKLNVFRMELL 156          
The following BLAST results are available for this feature:
BLAST of CX043277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 425
Match NameE-valueIdentityDescription
TRPB_THEP32.475e-3651.32Tryptophan synthase beta chain OS=Thermoanaerobact... [more]
TRPB_PROM52.475e-3650.66Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PSEF57.200e-3650.66Tryptophan synthase beta chain OS=Pseudomonas fluo... [more]
TRPB_BACC77.200e-3650.00Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_BACC47.200e-3651.32Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_RHOPB9.404e-3650.00Tryptophan synthase beta chain OS=Rhodopseudomonas... [more]
TRPB_METJA9.404e-3649.35Tryptophan synthase beta chain OS=Methanocaldococc... [more]
TRPB_GEOTN9.404e-3653.29Tryptophan synthase beta chain OS=Geobacillus ther... [more]
TRPB_PSESY1.228e-3550.66Tryptophan synthase beta chain OS=Pseudomonas syri... [more]
TRPB_BACHK1.228e-3550.00Tryptophan synthase beta chain OS=Bacillus thuring... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043277 ID=CX043277; Name=CX043277; organism=Citrus sinensis; type=EST; length=796bp
AAACAGGATAACATTTTTATGTATATGTATAGGTGTGTGTGTGTTTAAAG
ATATCACAAGCCAAAATCGTCTCTTAATCGCCACACATACTGCATACAGA
GAAGTGTTTTTGCGCCCACTAACATGGATATTGTTTGCAATAACATAAGT
TTTCAGCTTCCTCACAAATTATCTATTACACGAACGCCATTCACATTCAC
AACAACAAAGAGTCGTACGGGGCCGTACTGCTCTTTACAAAAGTACTCGA
CCTCGAGTCCCATTATGAGAAAGCCTTTGATAAACAGCTTATTACCTAAA
ACTGATCATGATCATCGTGAGTACTGGAAACTCAATCCAGGAAAATTTGG
GAGATTTGGAGGAAAGTTTGTGCCTGAGACACTAATCACTTGTTTGAGCC
TACTTGAAGCTGAATTCAACTTTGTTTTGCAGGATACTAAGTTTCAGGAG
GAGCTGTCGACTGCATTAAGAGACTATGTAGGACGGGAGACGCCTCTTTA
TTTTGCTGAGAGGCTGACAGATCATTACAGGAACGAAAAGGGAGAAGGGC
CAGAGATTTATCTGAAAAGAGAAGATCTCAACCATGTGGGTGCACACAAG
ATCAACAACGCCATAGGACAGGCAATGATAGCCAAGCGCATGGGCCGGAA
AAGTATTGTCGCGGCCACCGGTGCTGGACAGCATGGCGTCGCTACAGCTG
CTGCATGCGCAAAACTGGCTTTGGACTGTACTGTGTTCATGGGCACCGCT
GATATGGAGAAACAATCCTCTAAAGTGCTCCTAATGAAGCTACTAG
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