CV885963

Overview
NameCV885963
Unique NameCV885963
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV885963 vs. ExPASy Swiss-Prot
Match: FAD5_MORAP (Delta(5) fatty acid desaturase OS=Mortierella alpina GN=DES1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 32/81 (39.51%), Postives = 49/81 (60.49%), Query Frame = -2 
Query:  357 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVP 599
            K   ++E+A HN + D +L I G+VY+VT FL  HPGG + LL    +D T  FE      +A  +M+KY++G + S+ +P
Sbjct:    7 KTFTWEELAAHNTKGDLFLAIRGRVYDVTKFLSRHPGGVDTLLLGAGRDVTPVFEMYHAFGAADAIMKKYYVGTLVSNELP 87
The following BLAST results are available for this feature:
BLAST of CV885963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
FAD5_MORAP9.928e-1139.51Delta(5) fatty acid desaturase OS=Mortierella alpi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_020B07_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_020_T7_B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885963 ID=CV885963; Name=CV885963; organism=Citrus sinensis; type=EST; length=666bp
TTTTGCGTCATTTCACTGTATTATTGCTTCGTATAACTTTTATCACATCC
TTCAACGAGGATGCACGAAGCACCAATTATTATTGCTACACATAGTTTAG
TATCAAAACAAATCCTGATACCAAGTGCCAATTGAAGTTCTAATACTATA
GGATAGGTAGTAAACTAACGAAGAGGTATCTGGTTCGGTTTTGCAATTCA
TACAATGCTTCACTCTTCTTTCTTGGAAAAGTAACGGAAAGCAAATGCTA
TGCCCAGGATCAACATCGGTACCAGGAACTGTAGAATCTTTGCTGCAGAT
CCAGTGTCTTCGGGACTATTAACTGCTTGTTGGGGTGGAGTGTACTTCCT
TTTTGCTGGAACACTGGAGCTATCAATCTCACCAATGTGGTATTTTTCCA
TCATCTCTCTGGCAGAATCGCTGTGACCCACATCTTCAAAGTCGTCTGTT
GCATCCTTCTCAGTAGCAGCTAGCAAGACTTCATCACCACCAGGATGATC
TTCGAGAAACGGAGTCACATTATAGACCTTTCCAGAAATTACAAGCCAAC
AATCATCTCTATTATTGTGCTTTGCCACCTCTTGAAAATCATGAACTTTG
GCCATTCTTTTCTGGCTATTTCAGCTACTGCTCACGCAGAATCAGAATTA
TAGGAGCTTGCAGCCT
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