EY665459

Overview
NameEY665459
Unique NameEY665459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: PEX6_RAT (Peroxisome assembly factor 2 OS=Rattus norvegicus GN=Pex6 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.797e-24
Identity = 62/143 (43.36%), Postives = 86/143 (60.14%), Query Frame = 2
Query:   17 LKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            L+ PE   ++G R   G+LL GPPGTGKTLLAKA+A E  + F S+ G E + M+VG     VR++F +A+  APCI+F DE+D++               ++ ++QLL E+DG      + VI ATNR D+LD ALLR   F
Sbjct:  723 LEHPE-LLSLGLR-RSGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSL-APSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRF 862          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: PEX6_MOUSE (Peroxisome assembly factor 2 OS=Mus musculus GN=Pex6 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.797e-24
Identity = 62/143 (43.36%), Postives = 86/143 (60.14%), Query Frame = 2
Query:   17 LKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            L+ PE   ++G R   G+LL GPPGTGKTLLAKA+A E  + F S+ G E + M+VG     VR++F +A+  APCI+F DE+D++               ++ ++QLL E+DG      + VI ATNR D+LD ALLR   F
Sbjct:  726 LEHPE-LLSLGLR-RSGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSL-APSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRF 865          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: PEX6_HUMAN (Peroxisome assembly factor 2 OS=Homo sapiens GN=PEX6 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.797e-24
Identity = 62/143 (43.36%), Postives = 86/143 (60.14%), Query Frame = 2
Query:   17 LKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            L+ PE   ++G R   G+LL GPPGTGKTLLAKA+A E  + F S+ G E + M+VG     VR++F +A+  APCI+F DE+D++               ++ ++QLL E+DG      + VI ATNR D+LD ALLR   F
Sbjct:  725 LEHPE-LLSLGLR-RSGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSL-APSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRF 864          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: PRS2_METJA (Putative 26S protease regulatory subunit homolog MJ1494 OS=Methanocaldococcus jannaschii GN=MJ1494 PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.165e-23
Identity = 56/140 (40.00%), Postives = 85/140 (60.71%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL 427
            +++L+ P+ F   G   PK VL  GPPGTGKTL+A+A+A E    F  +   E +   VG  +  +R+L+++A E+APCIVF+DE+DA+             +  + +N LLTE+DG + N G++ IAATN   +LD A+
Sbjct:  140 MKYLENPKLF---GEWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASKMIRELYQRASESAPCIVFIDELDAI--GLSREYQSLRGDVSEVVNALLTELDGIKENEGVVTIAATNNPAMLDPAI 274          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: CD48B_ARATH (Cell division control protein 48 homolog B OS=Arabidopsis thaliana GN=CDC48B PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.772e-23
Identity = 60/144 (41.67%), Postives = 83/144 (57.64%), Query Frame = 2
Query:   17 LKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDE-REQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            +K    F  +G    +G+LL GPPG  KT LAKA A  A   FFS+S +E   M+VG G + +R+ F++A+  +P I+F DE D V           +    E+ L+ LLTEMDG E   GI+V+AATNR   +D+AL+R   F
Sbjct:  306 IKHSAAFVKMGISPMRGILLHGPPGCSKTTLAKAAANAAQASFFSLSCAELFSMYVGEGEALLRNTFQRARLASPSIIFFDEADVVACKRGDESSSNSSTVGERLLSTLLTEMDGLEEAKGILVLAATNRPYAIDAALMRPGRF 449          

HSP 2 Score: 25.7942 bits (55), Expect = 2.772e-23
Identity = 20/78 (25.64%), Postives = 33/78 (42.31%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKNRDIKRFTGSNKKFDANGVSLMGKPEQTPGFQAADFATLKEQAGIFACDDGRQVAIVFEK 668
            PGRFD  + V  PD+  +   ++  T +    D   V L    E+T  F  A+   L  ++G  +  +      VF +
Sbjct:  446 PGRFDLVLYVPPPDLEARFEILQVHTRNMTLGD--DVDLRKIAEETDLFTGAELEGLCRESGTVSLRENIAATAVFNR 521          

HSP 3 Score: 74.3294 bits (181), Expect = 9.250e-13
Identity = 49/150 (32.67%), Postives = 75/150 (50.00%), Query Frame = 2
Query:   26 PERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENA----PCIVFVDEIDAVXXXXXXXXXXXNDEREQTL---NQLLTEMDGFEGNTG---IIVIAATNRADILDSALLRAWTF 445
            P     +G + P+G+LL GPPGTGKT L +A+  E       +S         G     +R+ F +A  +A    P ++F+DEID +           +  REQ +   +QL T MD  + ++    ++V+A+TNR D +D AL RA  F
Sbjct:   45 PLEARTLGLKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEASSHAVSDKPSVIFIDEIDVL-------CPRRDARREQDVRIASQLFTLMDSNKPSSSAPRVVVVASTNRVDAIDPALRRAGRF 187          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: SPA5L_HUMAN (Spermatogenesis-associated protein 5-like protein 1 OS=Homo sapiens GN=SPATA5L1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.030e-22
Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = 2
Query:   17 LKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENA---PCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            L+ P   TA+G  +P+GVLL GPPG GKT L +A+A EAG    ++S         G     VR +F++A+E A   P ++F+DE+DA+                + + Q+LT +DG  G+  ++V+ ATNR D LD AL R   F
Sbjct:  220 LRYPRALTALGLAVPRGVLLAGPPGVGKTQLVQAVAREAGAELLAVSAPALQGSRPGETEENVRRVFQRARELASRGPSLLFLDEMDAL-----CPQRGSRAPESRVVAQVLTLLDGASGDREVVVVGATNRPDALDPALRRPGRF 360          

HSP 2 Score: 33.113 bits (74), Expect = 1.030e-22
Identity = 20/65 (30.77%), Postives = 33/65 (50.77%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKNRDIKRFTGSNKKFDANGVSLMGKPEQTPGFQAADFATLKEQAGIFA 629
            PGRFDR+V +  P ++ +   ++  T  +K   ++ V L    E T G+  AD   L  +A + A
Sbjct:  357 PGRFDREVVIGTPTLKQRKEILQVIT--SKMPISSHVDLGLLAEMTVGYVGADLTALCREAAMHA 419          

HSP 3 Score: 97.4413 bits (241), Expect = 1.020e-19
Identity = 59/158 (37.34%), Postives = 85/158 (53.80%), Query Frame = 2
Query:   17 LKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDG-----------------FEG--NTGIIVIAATNRADILDSALLR 433
            LK P  F  +G   PKGVLL GPPG  KT L +A+A      F S+SG++    FVG     +  +F++A+ + P I+F+DEID++            D +E+ L+ LL E+DG                 F+   N  +++IAATNR D+LD+ALLR
Sbjct:  484 LKFPWEFVRMGLTQPKGVLLYGPPGCAKTTLVRALATSCHCSFVSVSGADLFSPFVGDSEKVLSQIFRQARASTPAILFLDEIDSILGARSASKTGC-DVQERVLSVLLNELDGVGLKTIERRGSKSSQQEFQEVFNRSVMIIAATNRPDVLDTALLR 640          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: PEX1_SCHPO (Peroxisomal ATPase pex1 OS=Schizosaccharomyces pombe GN=pex1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.288e-22
Identity = 55/127 (43.31%), Postives = 76/127 (59.84%), Query Frame = 2
Query:   53 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLR 433
            R+P G+LL G PG GKT LA AI+    V F SI G E ++ ++G     VRDLF +A+   PC++F DE D+V            D   + +NQ+LT+MDG E   G+ ++AAT R D++D ALLR
Sbjct:  638 RLPTGILLFGYPGCGKTYLASAISSTFPVQFISIKGPELLDKYIGKSEQGVRDLFSRAQMAKPCVLFFDEFDSVAPRRGQDSTGVTD---RVVNQILTQMDGAESLDGVYIVAATTRPDMIDPALLR 761          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: PRS2_METTM (Putative 26S protease regulatory subunit homolog MTH1011 OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.391e-22
Identity = 53/140 (37.86%), Postives = 84/140 (60.00%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL 427
            +R+L+ P+RF       P+ VL  G PGTGKT+LAK++A E  VP + I  +  +   VG GA ++ +L++ A + AP ++F+DE+DA+             +  + +N LLTEMDG   N G++ I ATN  ++LD+A+
Sbjct:  143 MRYLEDPDRFRDWA---PRNVLFHGSPGTGKTMLAKSLANELRVPLYLIKATSLIGEHVGDGARQIHELYELASKTAPSVIFIDEMDAI--GLDRRFQSLRGDVSEVVNALLTEMDGINQNWGVVTIGATNNPELLDNAI 277          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: PRS2_METTH (Putative 26S protease regulatory subunit homolog MTH_1011 OS=Methanobacterium thermoautotrophicum GN=MTH_1011 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.859e-21
Identity = 52/140 (37.14%), Postives = 83/140 (59.29%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL 427
            +++L+ P+RF       P+ VL  G PGTGKT+LAK++A E  VP + I  +  +   VG GA ++ +L++ A + AP ++F+DE+DA+             +  + +N LLTEMDG   N G++ I ATN  ++LD A+
Sbjct:  143 MKYLEDPDRFRDWA---PRNVLFHGSPGTGKTMLAKSLANELKVPLYLIKATSLIGEHVGDGARQIHELYELASKTAPSVIFIDEMDAI--GLDRRYQSLRGDVSEVVNALLTEMDGINQNWGVVTIGATNNPELLDKAI 277          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: SPA5L_XENTR (Spermatogenesis-associated protein 5-like protein 1 OS=Xenopus tropicalis GN=spata5l1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.430e-21
Identity = 56/146 (38.36%), Postives = 79/146 (54.11%), Query Frame = 2
Query:   17 LKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENA---PCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            L  PE    +G   PKGVLL+GPPG GKTLL KA+A E G     +SG        G     +R +F+KA+E A   P ++F+DE+DA+           +    + + QLLT MDG + +  ++ +AAT+R D +D AL R   F
Sbjct:  211 LHYPETMHKLGLPCPKGVLLIGPPGVGKTLLVKAVAREVGAYVIGLSGPAIHGSRPGESEENLRKIFEKAREAACSGPALLFIDEVDAL---CPKRGHSNSAPENRVVAQLLTLMDGIDSDNKMVTVAATSRPDAIDPALRRPGRF 353          

HSP 2 Score: 26.9498 bits (58), Expect = 2.430e-21
Identity = 20/65 (30.77%), Postives = 29/65 (44.62%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKNRDIKRFTGSNKKFDANGVSLMGKPEQTPGFQAADFATLKEQAGIFA 629
            PGRFDR+V +  P  + + + I     SN   D + V      + T G+  AD   L   A + A
Sbjct:  350 PGRFDREVIIGTPTHK-QRQAILEMMISNMPTDRD-VDAAALADVTVGYVGADLTALCRDAAMQA 412          
The following BLAST results are available for this feature:
BLAST of EY665459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
PEX6_RAT1.797e-2443.36Peroxisome assembly factor 2 OS=Rattus norvegicus ... [more]
PEX6_MOUSE1.797e-2443.36Peroxisome assembly factor 2 OS=Mus musculus GN=Pe... [more]
PEX6_HUMAN1.797e-2443.36Peroxisome assembly factor 2 OS=Homo sapiens GN=PE... [more]
PRS2_METJA1.165e-2340.00Putative 26S protease regulatory subunit homolog M... [more]
CD48B_ARATH2.772e-2341.67Cell division control protein 48 homolog B OS=Arab... [more]
SPA5L_HUMAN1.030e-2237.67Spermatogenesis-associated protein 5-like protein ... [more]
PEX1_SCHPO1.288e-2243.31Peroxisomal ATPase pex1 OS=Schizosaccharomyces pom... [more]
PRS2_METTM6.391e-2237.86Putative 26S protease regulatory subunit homolog M... [more]
PRS2_METTH1.859e-2137.14Putative 26S protease regulatory subunit homolog M... [more]
SPA5L_XENTR2.430e-2138.36Spermatogenesis-associated protein 5-like protein ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-D01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665459 ID=EY665459; Name=EY665459; organism=Citrus sinensis; type=EST; length=834bp
CCCACGCGTCCGGTTCCTTAAGAAGCCTGAGAGATTTACAGCTGTTGGAG
CTCGTATTCCAAAGGGTGTTCTTCTCGTTGGTCCTCCAGGAACTGGGAAG
ACTCTTCTTGCCAAGGCAATTGCTGGTGAAGCCGGTGTTCCATTTTTCTC
CATATCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTCGGTGCATCTA
GAGTCCGAGATCTTTTCAAGAAGGCCAAAGAGAATGCTCCTTGCATTGTA
TTTGTGGATGAAATTGATGCCGTTGGAAGACAAAGAGGAACTGGAATTGG
AGGAGGGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAA
TGGATGGTTTTGAGGGTAATACTGGTATCATTGTGATTGCTGCAACTAAC
AGGGCGGACATTCTTGATTCTGCCTTATTGAGGGCCTGGACGTTTTGATA
GACAGGTTACTGTTGATGTTCCTGACATTCGAGGAAAGAACAGAGATATT
AAAAGGTTCACGGGTAGCAACAAAAAATTTGATGCAAATGGTGTCTCCTT
GATGGGAAAGCCAGAACAAACCCCTGGGTTCCAGGCTGCTGACTTTGCAA
CCCTCAAAGAACAGGCAGGCATCTTTGCGTGCGACGACGGGCGGCAAGTG
GCTATTGTATTTGAAAAAAAATGACCAATACAAGTGAAACGCAATGTTCA
TTCACACCCAACACAATCACCCTCACCAAACACGGGCAGAAACGACTGAT
AGTCGGAACGCACAAACACGCGCCCGAGAAAAAGCAAGCACCCGAAACCT
CGGAAACAATAATGCCATCATTACAACTCAGACC
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