EY665459

Overview
NameEY665459
Unique NameEY665459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: MPA_MYCBO (Proteasome-associated ATPase OS=Mycobacterium bovis GN=mpa PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.812e-20
Identity = 64/159 (40.25%), Postives = 86/159 (54.09%), Query Frame = 2
Query:   14 FLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAG---------------EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENA----PCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLR 433
            FL K E +     R PKGVLL GPPG GKTL+AKA+A                EA   F +I G E +  FVG     +R +F++A+E A    P IVF DE+D++           +D     + QLL+E+DG EG   +IVI A+NR D++D A+LR
Sbjct:  272 FLHK-ELYREYSLRPPKGVLLYGPPGCGKTLIAKAVANSLAKKMAEVRGDDAHEAKSYFLNIKGPELLNKFVGETERHIRLIFQRAREKASEGTPVIVFFDEMDSI--FRTRGTGVSSDVETTVVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILR 427          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: SPAST_DICDI (Spastin OS=Dictyostelium discoideum GN=DDB_G0287165 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.333e-19
Identity = 57/139 (41.01%), Postives = 81/139 (58.27%), Query Frame = 2
Query:   23 KPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDG--FEGNTGIIVIAATNRADILDSALLR 433
            +P+ FT + A  PKG+LL GPPG GKT++AKA+A E+ V FFSIS S     +VG G   VR LF  A    P I+F+DEID++           ++   +   ++L + DG    G+  ++V+ ATNR + LD A LR
Sbjct:  406 RPDVFTGLRAP-PKGLLLFGPPGNGKTMIAKAVAYESKVTFFSISSSSLTSKYVGDGEKLVRALFAVATHFQPSIIFIDEIDSL---LTERSSNESEASRRLKTEILVQFDGARTNGDERVLVMGATNRPEDLDDAALR 540          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: FTSHC_ARATH (Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.333e-19
Identity = 57/150 (38.00%), Postives = 82/150 (54.67%), Query Frame = 2
Query:   14 FLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGI---------IVIAATNRADILDSALLRA 436
            ++  P ++        +GVLL GPPGTGKTL A+ +A E+G+PF   SG+EF +     GA+++ ++F  A+ NAP  VFVDEIDA+           +  R  T   L+ ++DG +  TGI         I I ATNR D LD   +R+
Sbjct:  511 YMGNPMQYYEKDVAFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKS-GAAKINEMFSIARRNAPAFVFVDEIDAI----AGRHARKDPRRRATFEALIAQLDGEKEKTGIDRFSLRQAVIFICATNRPDELDLEFVRS 655          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: SPAST_IXOSC (Spastin OS=Ixodes scapularis GN=spas PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.740e-19
Identity = 59/145 (40.69%), Postives = 81/145 (55.86%), Query Frame = 2
Query:   23 KPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQT---LNQLLTEMDGFE--GNTGIIVIAATNRADILDSALLRAWT 442
            +PE FT + A  PKG+LL GPPG GKT+LAKA+A E+   F +IS +     +VG G   VR LF  A+E  P I+F+DE+D++           ++E E T     + L E DG        ++V+ ATNR   LD A LR +T
Sbjct:  396 RPELFTGLRAP-PKGLLLFGPPGNGKTMLAKAVAHESNSTFLNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSL------LSERKDNEHEATRRLKTEFLVEFDGLHTGSEERVLVMGATNRPQELDDAALRRFT 533          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: MPA_RHOER (Proteasome-associated ATPase OS=Rhodococcus erythropolis GN=mpa PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.740e-19
Identity = 63/159 (39.62%), Postives = 86/159 (54.09%), Query Frame = 2
Query:   14 FLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAG---------------EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENA----PCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLR 433
            FL K + F     R PKGVLL GPPG GKTL+AKA+A                +A   F +I G E +  FVG     +R +F++A+E A    P IVF DE+D++           +D     + QLL+E+DG EG   +IVI A+NR D++D A+LR
Sbjct:  254 FLHK-DLFHEYSLRPPKGVLLYGPPGCGKTLIAKAVANSLAKKIAEARGQDSKDAKSYFLNIKGPELLNKFVGETERHIRMIFQRAREKASEGTPVIVFFDEMDSI--FRTRGSGVSSDVETTVVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILR 409          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: VPS4_SCHPO (Suppressor protein of bem1/bed5 double mutants OS=Schizosaccharomyces pombe GN=vps4 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.273e-19
Identity = 56/140 (40.00%), Postives = 84/140 (60.00%), Query Frame = 2
Query:   17 LKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGF-EGNTGIIVIAATNRADILDSALLR 433
            +K P+ F+  G +   G+LL GPPGTGK+ LAKA+A EAG  FFSIS S+ V  ++G     VR LF+ A+E  P I+F+DEID++           ++   +   + L +M+G  +  +G++V+ ATN    LDSA+ R
Sbjct:  149 IKLPQLFSH-GRKPWSGILLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSL---CGSRSEGESESSRRIKTEFLVQMNGVGKDESGVLVLGATNIPWTLDSAIRR 284          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: TBP7_YEAST (TAT-binding homolog 7 OS=Saccharomyces cerevisiae GN=YTA7 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.714e-19
Identity = 56/149 (37.58%), Postives = 82/149 (55.03%), Query Frame = 2
Query:   26 PERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAG-----EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQ----TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            PE +       P+GVL  GPPGTGKTL+A+A+A      E  + FF   G++ +  +VG    ++R LF++AK++ P I+F DEID +           + ++EQ     ++ LL  MDG +    +IVI ATNR D +D AL R   F
Sbjct:  436 PELYQNFNITPPRGVLFHGPPGTGKTLMARALAASCSSDERKITFFMRKGADILSKWVGEAERQLRLLFEEAKKHQPSIIFFDEIDGL-------APVRSSKQEQIHASIVSTLLALMDGMDNRGQVIVIGATNRPDAVDPALRRPGRF 577          

HSP 2 Score: 25.7942 bits (55), Expect = 2.714e-19
Identity = 16/66 (24.24%), Postives = 32/66 (48.48%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKNRDIKRFTGS-NKKFDANGVSLMGKPEQTPGFQAADFATLKEQAGIFA 629
            PGRFDR+    +PD++ + + ++  T   +     N +  +     T G+  AD  +L  +A + +
Sbjct:  574 PGRFDREFYFPLPDVKARFKILQIQTRKWSSPLSTNFIDKLA--FLTKGYGGADLRSLCTEAALIS 637          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.877e-19
Identity = 60/142 (42.25%), Postives = 85/142 (59.86%), Query Frame = 2
Query:   17 LKKPERFTAVGARIP-KGVLLVGPPGTGKTLLAKAIAGEAG-VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGF-EGNTGIIVIAATNRADILDSALLR 433
            +K P  FT  G R P +G+LL GPPGTGK+ LAKA+A EA    FFSIS S+ V  ++G     V++LF+ A+EN P I+F+DEID++           ++   +   + L +M G    N GI+V+ ATN   +LDSA+ R
Sbjct:  154 IKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL---CGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR 290          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.877e-19
Identity = 60/142 (42.25%), Postives = 85/142 (59.86%), Query Frame = 2
Query:   17 LKKPERFTAVGARIP-KGVLLVGPPGTGKTLLAKAIAGEAG-VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGF-EGNTGIIVIAATNRADILDSALLR 433
            +K P  FT  G R P +G+LL GPPGTGK+ LAKA+A EA    FFSIS S+ V  ++G     V++LF+ A+EN P I+F+DEID++           ++   +   + L +M G    N GI+V+ ATN   +LDSA+ R
Sbjct:  154 IKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL---CGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR 290          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.877e-19
Identity = 60/142 (42.25%), Postives = 85/142 (59.86%), Query Frame = 2
Query:   17 LKKPERFTAVGARIP-KGVLLVGPPGTGKTLLAKAIAGEAG-VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGF-EGNTGIIVIAATNRADILDSALLR 433
            +K P  FT  G R P +G+LL GPPGTGK+ LAKA+A EA    FFSIS S+ V  ++G     V++LF+ A+EN P I+F+DEID++           ++   +   + L +M G    N GI+V+ ATN   +LDSA+ R
Sbjct:  154 IKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL---CGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR 290          
The following BLAST results are available for this feature:
BLAST of EY665459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
MPA_MYCBO7.812e-2040.25Proteasome-associated ATPase OS=Mycobacterium bovi... [more]
SPAST_DICDI1.333e-1941.01Spastin OS=Dictyostelium discoideum GN=DDB_G028716... [more]
FTSHC_ARATH1.333e-1938.00Cell division protease ftsH homolog 12, chloroplas... [more]
SPAST_IXOSC1.740e-1940.69Spastin OS=Ixodes scapularis GN=spas PE=3 SV=1[more]
MPA_RHOER1.740e-1939.62Proteasome-associated ATPase OS=Rhodococcus erythr... [more]
VPS4_SCHPO2.273e-1940.00Suppressor protein of bem1/bed5 double mutants OS=... [more]
TBP7_YEAST2.714e-1937.58TAT-binding homolog 7 OS=Saccharomyces cerevisiae ... [more]
VPS4B_MOUSE3.877e-1942.25Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_HUMAN3.877e-1942.25Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_BOVIN3.877e-1942.25Vacuolar protein sorting-associated protein 4B OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-D01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665459 ID=EY665459; Name=EY665459; organism=Citrus sinensis; type=EST; length=834bp
CCCACGCGTCCGGTTCCTTAAGAAGCCTGAGAGATTTACAGCTGTTGGAG
CTCGTATTCCAAAGGGTGTTCTTCTCGTTGGTCCTCCAGGAACTGGGAAG
ACTCTTCTTGCCAAGGCAATTGCTGGTGAAGCCGGTGTTCCATTTTTCTC
CATATCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTCGGTGCATCTA
GAGTCCGAGATCTTTTCAAGAAGGCCAAAGAGAATGCTCCTTGCATTGTA
TTTGTGGATGAAATTGATGCCGTTGGAAGACAAAGAGGAACTGGAATTGG
AGGAGGGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAA
TGGATGGTTTTGAGGGTAATACTGGTATCATTGTGATTGCTGCAACTAAC
AGGGCGGACATTCTTGATTCTGCCTTATTGAGGGCCTGGACGTTTTGATA
GACAGGTTACTGTTGATGTTCCTGACATTCGAGGAAAGAACAGAGATATT
AAAAGGTTCACGGGTAGCAACAAAAAATTTGATGCAAATGGTGTCTCCTT
GATGGGAAAGCCAGAACAAACCCCTGGGTTCCAGGCTGCTGACTTTGCAA
CCCTCAAAGAACAGGCAGGCATCTTTGCGTGCGACGACGGGCGGCAAGTG
GCTATTGTATTTGAAAAAAAATGACCAATACAAGTGAAACGCAATGTTCA
TTCACACCCAACACAATCACCCTCACCAAACACGGGCAGAAACGACTGAT
AGTCGGAACGCACAAACACGCGCCCGAGAAAAAGCAAGCACCCGAAACCT
CGGAAACAATAATGCCATCATTACAACTCAGACC
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