EY665459

Overview
NameEY665459
Unique NameEY665459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEBR (Fidgetin-like protein 1 OS=Caenorhabditis briggsae GN=figl-1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.629e-17
Identity = 51/140 (36.43%), Postives = 78/140 (55.71%), Query Frame = 2
Query:   20 KKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFE--GNTGIIVIAATNRADILDSALLR 433
            ++P+ FT + A  PKGVLL GPPGTGKT++ + +A +A   FF+IS S     +VG G   VR LF  A+   P ++F+DEID++           ++   +   + L ++DG     +  ++V+ ATNR   LD A  R
Sbjct:  337 QRPDIFTGLRAP-PKGVLLFGPPGTGKTMIGRCVASQAQATFFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEIDSL---LSARSESEHESSRRIKTEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARR 472          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: NSF_CAEEL (Vesicle-fusing ATPase OS=Caenorhabditis elegans GN=nsf-1 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.828e-17
Identity = 56/146 (38.36%), Postives = 79/146 (54.11%), Query Frame = 2
Query:   26 PERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAG--EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKEN-APC-------IVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLR 433
            PE    +G +  +G+LL GPPGTGKTL+A+ I     A  P   ++G + ++ +VG   S VR LF  A+E    C       I+  DEIDA+           +   +  +NQLL++MDG E    I+VI  TNR D++D ALLR
Sbjct:  319 PEFIEQLGMKHVRGILLFGPPGTGKTLMARQIGKMLNAREPKI-VNGPQILDKYVGESESNVRKLFADAEEEWRRCGANSGLHIIIFDEIDAICKQRGSMAGS-SSVHDTVVNQLLSKMDGVEQLNNILVIGMTNRRDMIDEALLR 462          

HSP 2 Score: 26.5646 bits (57), Expect = 1.828e-17
Identity = 20/64 (31.25%), Postives = 30/64 (46.88%), Query Frame = 3
Query:  435 PGRFDRQVTVDVPDIRGKNRDIKRFTGSNK---KFDANGVSLMGKPEQTPGFQAADFATLKEQA 617
            PGR + Q+ V +PD  G+ + +K  T   +   K D N V L    ++T  F  A+   L   A
Sbjct:  463 PGRLEVQMEVSLPDETGRLQILKIHTARMREYNKMDPN-VDLEDISKRTKNFSGAELEGLVRAA 525          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: VPS4A_RAT (Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus GN=Vps4a PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.128e-17
Identity = 54/142 (38.03%), Postives = 84/142 (59.15%), Query Frame = 2
Query:   17 LKKPERFTAVGARIP-KGVLLVGPPGTGKTLLAKAIAGEAG-VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGF-EGNTGIIVIAATNRADILDSALLR 433
            +K P  FT  G R P +G+LL GPPGTGK+ LAKA+A EA    FFS+S S+ +  ++G     V++LF+ A+++ P I+F+DE+D++           ++   +   + L +M G    N G +V+ ATN   +LDSA+ R
Sbjct:  147 IKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSL---CGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR 283          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: VPS4A_MOUSE (Vacuolar protein sorting-associated protein 4A OS=Mus musculus GN=Vps4a PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.128e-17
Identity = 54/142 (38.03%), Postives = 84/142 (59.15%), Query Frame = 2
Query:   17 LKKPERFTAVGARIP-KGVLLVGPPGTGKTLLAKAIAGEAG-VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGF-EGNTGIIVIAATNRADILDSALLR 433
            +K P  FT  G R P +G+LL GPPGTGK+ LAKA+A EA    FFS+S S+ +  ++G     V++LF+ A+++ P I+F+DE+D++           ++   +   + L +M G    N G +V+ ATN   +LDSA+ R
Sbjct:  147 IKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSL---CGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR 283          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: VPS4A_HUMAN (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.128e-17
Identity = 54/142 (38.03%), Postives = 84/142 (59.15%), Query Frame = 2
Query:   17 LKKPERFTAVGARIP-KGVLLVGPPGTGKTLLAKAIAGEAG-VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGF-EGNTGIIVIAATNRADILDSALLR 433
            +K P  FT  G R P +G+LL GPPGTGK+ LAKA+A EA    FFS+S S+ +  ++G     V++LF+ A+++ P I+F+DE+D++           ++   +   + L +M G    N G +V+ ATN   +LDSA+ R
Sbjct:  147 IKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSL---CGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR 283          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: KTNA1_STRPU (Katanin p60 ATPase-containing subunit OS=Strongylocentrotus purpuratus GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.128e-17
Identity = 54/137 (39.42%), Postives = 78/137 (56.93%), Query Frame = 2
Query:   47 GARIP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTG-------IIVIAATNRADILDSALLR 433
            G R P KGVL+VGPPGTGKT+LAKA+A E G  FF++S +     + G     VR LF+ A+  AP  +F+DEID++           ++   +  ++LL +MDG  G +        ++V+AATN    +D AL R
Sbjct:  262 GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSASLTSKYHGESEKLVRLLFEMARFYAPSTIFIDEIDSI--CSKRGTGSEHEASRRVKSELLIQMDGVSGPSAGEESSKMVMVLAATNFPWDIDEALRR 396          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: KATL1_SORAR (Katanin p60 ATPase-containing subunit A-like 1 OS=Sorex araneus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.128e-17
Identity = 58/140 (41.43%), Postives = 80/140 (57.14%), Query Frame = 2
Query:   47 GARIP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDERE---QTLNQLLTEMDGFEG-------NTGIIVIAATNRADILDSALLR 433
            G R P KGVL+VGPPGTGKT+LAKA+A E G  FF++S S     + G     VR LF+ A+  AP  +F+DEID++           +DE E   +  ++LL +MDG  G       +  ++V+AATN    +D AL R
Sbjct:  236 GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSI-----CSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR 370          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: KATL1_RAT (Katanin p60 ATPase-containing subunit A-like 1 OS=Rattus norvegicus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.128e-17
Identity = 58/140 (41.43%), Postives = 80/140 (57.14%), Query Frame = 2
Query:   47 GARIP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDERE---QTLNQLLTEMDGFEG-------NTGIIVIAATNRADILDSALLR 433
            G R P KGVL+VGPPGTGKT+LAKA+A E G  FF++S S     + G     VR LF+ A+  AP  +F+DEID++           +DE E   +  ++LL +MDG  G       +  ++V+AATN    +D AL R
Sbjct:  234 GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSI-----CSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR 368          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: KATL1_PAPAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Papio anubis GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.128e-17
Identity = 58/140 (41.43%), Postives = 80/140 (57.14%), Query Frame = 2
Query:   47 GARIP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDERE---QTLNQLLTEMDGFEG-------NTGIIVIAATNRADILDSALLR 433
            G R P KGVL+VGPPGTGKT+LAKA+A E G  FF++S S     + G     VR LF+ A+  AP  +F+DEID++           +DE E   +  ++LL +MDG  G       +  ++V+AATN    +D AL R
Sbjct:  236 GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSI-----CSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR 370          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: KATL1_OTOGA (Katanin p60 ATPase-containing subunit A-like 1 OS=Otolemur garnettii GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.128e-17
Identity = 58/140 (41.43%), Postives = 80/140 (57.14%), Query Frame = 2
Query:   47 GARIP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDERE---QTLNQLLTEMDGFEG-------NTGIIVIAATNRADILDSALLR 433
            G R P KGVL+VGPPGTGKT+LAKA+A E G  FF++S S     + G     VR LF+ A+  AP  +F+DEID++           +DE E   +  ++LL +MDG  G       +  ++V+AATN    +D AL R
Sbjct:  236 GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSI-----CSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR 370          
The following BLAST results are available for this feature:
BLAST of EY665459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
FIGL1_CAEBR1.629e-1736.43Fidgetin-like protein 1 OS=Caenorhabditis briggsae... [more]
NSF_CAEEL1.828e-1738.36Vesicle-fusing ATPase OS=Caenorhabditis elegans GN... [more]
VPS4A_RAT2.128e-1738.03Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_MOUSE2.128e-1738.03Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_HUMAN2.128e-1738.03Vacuolar protein sorting-associated protein 4A OS=... [more]
KTNA1_STRPU2.128e-1739.42Katanin p60 ATPase-containing subunit OS=Strongylo... [more]
KATL1_SORAR2.128e-1741.43Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_RAT2.128e-1741.43Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_PAPAN2.128e-1741.43Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_OTOGA2.128e-1741.43Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-D01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665459 ID=EY665459; Name=EY665459; organism=Citrus sinensis; type=EST; length=834bp
CCCACGCGTCCGGTTCCTTAAGAAGCCTGAGAGATTTACAGCTGTTGGAG
CTCGTATTCCAAAGGGTGTTCTTCTCGTTGGTCCTCCAGGAACTGGGAAG
ACTCTTCTTGCCAAGGCAATTGCTGGTGAAGCCGGTGTTCCATTTTTCTC
CATATCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTCGGTGCATCTA
GAGTCCGAGATCTTTTCAAGAAGGCCAAAGAGAATGCTCCTTGCATTGTA
TTTGTGGATGAAATTGATGCCGTTGGAAGACAAAGAGGAACTGGAATTGG
AGGAGGGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAA
TGGATGGTTTTGAGGGTAATACTGGTATCATTGTGATTGCTGCAACTAAC
AGGGCGGACATTCTTGATTCTGCCTTATTGAGGGCCTGGACGTTTTGATA
GACAGGTTACTGTTGATGTTCCTGACATTCGAGGAAAGAACAGAGATATT
AAAAGGTTCACGGGTAGCAACAAAAAATTTGATGCAAATGGTGTCTCCTT
GATGGGAAAGCCAGAACAAACCCCTGGGTTCCAGGCTGCTGACTTTGCAA
CCCTCAAAGAACAGGCAGGCATCTTTGCGTGCGACGACGGGCGGCAAGTG
GCTATTGTATTTGAAAAAAAATGACCAATACAAGTGAAACGCAATGTTCA
TTCACACCCAACACAATCACCCTCACCAAACACGGGCAGAAACGACTGAT
AGTCGGAACGCACAAACACGCGCCCGAGAAAAAGCAAGCACCCGAAACCT
CGGAAACAATAATGCCATCATTACAACTCAGACC
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