EY665459

Overview
NameEY665459
Unique NameEY665459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: MEI1_CAEEL (Meiotic spindle formation protein mei-1 OS=Caenorhabditis elegans GN=mei-1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.868e-17
Identity = 53/140 (37.86%), Postives = 78/140 (55.71%), Query Frame = 2
Query:   26 PERFTAVGARIP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEG---NTGIIVIAATNRADILDSALLR 433
            PE F   G R P K ++L GPPGTGKTL+A+AIA E+   FF++S ++    + G     VR LF+ A+  AP I+F+DEID +           ++   +  ++ L +MDG +    +  + V+AATN    LD AL R
Sbjct:  216 PEFFQ--GLRSPWKAMVLAGPPGTGKTLIARAIASESSSTFFTVSSTDLSSKWRGDSEKIVRLLFELARFYAPSIIFIDEIDTL--GGQRGNSGEHEASRRVKSEFLVQMDGSQNKFDSRRVFVLAATNIPWELDEALRR 351          

HSP 2 Score: 28.8758 bits (63), Expect = 6.868e-17
Identity = 19/62 (30.65%), Postives = 31/62 (50.00%), Query Frame = 3
Query:  441 RFDRQVTVDVPDIRGKNRDI-KRFTGSNKKFDANGVSLMGKPEQTPGFQAADFATLKEQAGI 623
            RF++++ + +PDI  + + I K   G+ K  + N   L  +   T GF  AD  +L   A I
Sbjct:  352 RFEKRIFIPLPDIDARKKLIEKSMEGTPKSDEINYDDLAAR---TEGFSGADVVSLCRTAAI 410          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: SPAST_BRUMA (Probable spastin homolog Bm1_53365 OS=Brugia malayi GN=Bm1_53365 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.056e-16
Identity = 53/133 (39.85%), Postives = 76/133 (57.14%), Query Frame = 2
Query:   47 GARIP-KGVLLVGPPGTGKTLLAKAIAGEAG-VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGF--EGNTGIIVIAATNRADILDSALLR 433
            G R P +G+LL GPPG GKTLLA+A+AGE G   F ++S +     +VG     VR LF+ A+   P I+F+DEID++            +   +   + L +MDG     +  ++VI ATNR + LDSA+LR
Sbjct:  206 GLRQPAQGILLFGPPGNGKTLLARAVAGECGSTMFLNVSAASLTSKWVGDAEKIVRALFQIARNGQPTIIFIDEIDSI---LCERNEKETEVSRRMKTEFLIQMDGMLSSKDDRLLVIGATNRPEELDSAILR 335          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: KTNA1_XENTR (Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis GN=katna1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.056e-16
Identity = 60/144 (41.67%), Postives = 78/144 (54.17%), Query Frame = 2
Query:   26 PERFTAVGARIP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEG-------NTGIIVIAATNRADILDSALLR 433
            PE F   G R P KGVL+VGPPGTGKTLLAKA+A E    FF+IS S     + G     VR LF+ A+  AP  +F+DEID++              R +   +LL +MDG  G       +  ++V+AATN    +D AL R
Sbjct:  233 PEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNISSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKA--ELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRR 372          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: KTNA1_XENLA (Katanin p60 ATPase-containing subunit (Fragment) OS=Xenopus laevis GN=katna1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.056e-16
Identity = 60/144 (41.67%), Postives = 78/144 (54.17%), Query Frame = 2
Query:   26 PERFTAVGARIP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEG-------NTGIIVIAATNRADILDSALLR 433
            PE F   G R P KGVL+VGPPGTGKTLLAKA+A E    FF+IS S     + G     VR LF+ A+  AP  +F+DEID++              R +   +LL +MDG  G       +  ++V+AATN    +D AL R
Sbjct:  229 PEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNISSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKA--ELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRR 368          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: KTNA1_SALSA (Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.379e-16
Identity = 59/144 (40.97%), Postives = 78/144 (54.17%), Query Frame = 2
Query:   26 PERFTAVGARIP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTG-------IIVIAATNRADILDSALLR 433
            PE F   G R P KGVL+VGPPGTGKTLLAKA+A E    FF++S S     + G     VR LF+ A+  AP  +F+DEID++              R +   +LL +MDG  G +        ++V+AATN    +D AL R
Sbjct:  227 PEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRILFEMARFYAPTTIFIDEIDSMCSRRGTSEEHEASRRVKA--ELLVQMDGVGGASDNEDPSKMVMVLAATNFPWDIDEALRR 366          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: KTNA1_HUMAN (Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.379e-16
Identity = 58/144 (40.28%), Postives = 78/144 (54.17%), Query Frame = 2
Query:   26 PERFTAVGARIP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTG-------IIVIAATNRADILDSALLR 433
            PE F   G R P KGVL+VGPPGTGKTLLAKA+A E    FF++S S     + G     VR LF+ A+  +P  +F+DEID++              R +   +LL +MDG  G +        ++V+AATN    +D AL R
Sbjct:  232 PEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKA--ELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRR 371          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: MSP1_YEAST (Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.801e-16
Identity = 51/126 (40.48%), Postives = 70/126 (55.56%), Query Frame = 2
Query:   59 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLN-QLLTEMDGFEGNTGIIVIAATNRADILDSALLR 433
            P GVLL GPPG GKT+LAKA+A E+G  F SI  S  ++ + G     V  +F  A +  PCI+F+DEID+            + E   TL  + +T  DG   N  +++I ATNR + +D A LR
Sbjct:  126 PSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYGESNKIVDAMFSLANKLQPCIIFIDEIDS----FLRERSSTDHEVTATLKAEFMTLWDGLLNNGRVMIIGATNRINDIDDAFLR 247          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: KTNA1_RAT (Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.352e-16
Identity = 58/144 (40.28%), Postives = 78/144 (54.17%), Query Frame = 2
Query:   26 PERFTAVGARIP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEG-------NTGIIVIAATNRADILDSALLR 433
            PE F   G R P KGVL+VGPPGTGKTLLAKA+A E    FF++S S     + G     VR LF+ A+  +P  +F+DEID++              R +   +LL +MDG  G       +  ++V+AATN    +D AL R
Sbjct:  232 PEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKA--ELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRR 371          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: KTNA1_MOUSE (Katanin p60 ATPase-containing subunit A1 OS=Mus musculus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.352e-16
Identity = 58/144 (40.28%), Postives = 78/144 (54.17%), Query Frame = 2
Query:   26 PERFTAVGARIP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEG-------NTGIIVIAATNRADILDSALLR 433
            PE F   G R P KGVL+VGPPGTGKTLLAKA+A E    FF++S S     + G     VR LF+ A+  +P  +F+DEID++              R +   +LL +MDG  G       +  ++V+AATN    +D AL R
Sbjct:  232 PEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRMKA--ELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRR 371          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: KTNA1_MACFA (Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.352e-16
Identity = 58/144 (40.28%), Postives = 78/144 (54.17%), Query Frame = 2
Query:   26 PERFTAVGARIP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEG-------NTGIIVIAATNRADILDSALLR 433
            PE F   G R P KGVL+VGPPGTGKTLLAKA+A E    FF++S S     + G     VR LF+ A+  +P  +F+DEID++              R +   +LL +MDG  G       +  ++V+AATN    +D AL R
Sbjct:  232 PEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKA--ELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRR 371          
The following BLAST results are available for this feature:
BLAST of EY665459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
MEI1_CAEEL6.868e-1737.86Meiotic spindle formation protein mei-1 OS=Caenorh... [more]
SPAST_BRUMA1.056e-1639.85Probable spastin homolog Bm1_53365 OS=Brugia malay... [more]
KTNA1_XENTR1.056e-1641.67Katanin p60 ATPase-containing subunit A1 OS=Xenopu... [more]
KTNA1_XENLA1.056e-1641.67Katanin p60 ATPase-containing subunit (Fragment) O... [more]
KTNA1_SALSA1.379e-1640.97Katanin p60 ATPase-containing subunit A1 OS=Salmo ... [more]
KTNA1_HUMAN1.379e-1640.28Katanin p60 ATPase-containing subunit A1 OS=Homo s... [more]
MSP1_YEAST1.801e-1640.48Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 P... [more]
KTNA1_RAT2.352e-1640.28Katanin p60 ATPase-containing subunit A1 OS=Rattus... [more]
KTNA1_MOUSE2.352e-1640.28Katanin p60 ATPase-containing subunit A1 OS=Mus mu... [more]
KTNA1_MACFA2.352e-1640.28Katanin p60 ATPase-containing subunit A1 OS=Macaca... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-D01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665459 ID=EY665459; Name=EY665459; organism=Citrus sinensis; type=EST; length=834bp
CCCACGCGTCCGGTTCCTTAAGAAGCCTGAGAGATTTACAGCTGTTGGAG
CTCGTATTCCAAAGGGTGTTCTTCTCGTTGGTCCTCCAGGAACTGGGAAG
ACTCTTCTTGCCAAGGCAATTGCTGGTGAAGCCGGTGTTCCATTTTTCTC
CATATCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTCGGTGCATCTA
GAGTCCGAGATCTTTTCAAGAAGGCCAAAGAGAATGCTCCTTGCATTGTA
TTTGTGGATGAAATTGATGCCGTTGGAAGACAAAGAGGAACTGGAATTGG
AGGAGGGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAA
TGGATGGTTTTGAGGGTAATACTGGTATCATTGTGATTGCTGCAACTAAC
AGGGCGGACATTCTTGATTCTGCCTTATTGAGGGCCTGGACGTTTTGATA
GACAGGTTACTGTTGATGTTCCTGACATTCGAGGAAAGAACAGAGATATT
AAAAGGTTCACGGGTAGCAACAAAAAATTTGATGCAAATGGTGTCTCCTT
GATGGGAAAGCCAGAACAAACCCCTGGGTTCCAGGCTGCTGACTTTGCAA
CCCTCAAAGAACAGGCAGGCATCTTTGCGTGCGACGACGGGCGGCAAGTG
GCTATTGTATTTGAAAAAAAATGACCAATACAAGTGAAACGCAATGTTCA
TTCACACCCAACACAATCACCCTCACCAAACACGGGCAGAAACGACTGAT
AGTCGGAACGCACAAACACGCGCCCGAGAAAAAGCAAGCACCCGAAACCT
CGGAAACAATAATGCCATCATTACAACTCAGACC
back to top