EY665459

Overview
NameEY665459
Unique NameEY665459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: ATD1A_DANRE (ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.427e-13
Identity = 45/127 (35.43%), Postives = 68/127 (53.54%), Query Frame = 2
Query:   59 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFE--GNTGIIVIAATNRADILDSALLR 433
            PKGVLL GPPG GKTL+AKA A  +G  F ++  S   + + G        +F  A +  PCI+F+DEID+            ++       Q ++  DG +   N+ ++V+ ATNR   +D+A+LR
Sbjct:  129 PKGVLLYGPPGCGKTLIAKATAKASGCRFINLQASTLTDKWYGESQKLTAAVFSLAVKIQPCIIFLDEIDS---FLRNRSSMDHEATAMMKAQFMSLWDGLDTGENSQVMVMGATNRPQDVDAAILR 252          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: ATAD1_RAT (ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus GN=Atad1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.864e-13
Identity = 47/127 (37.01%), Postives = 67/127 (52.76%), Query Frame = 2
Query:   59 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTG--IIVIAATNRADILDSALLR 433
            PKGVLL GPPG GKTL+AKA A EAG  F ++  S   + + G        +F  A +  P I+F+DEID+            ++       Q ++  DG + +    +IV+ ATNR   LDSA++R
Sbjct:  126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDS---FLRNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMR 249          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: ATAD1_MOUSE (ATPase family AAA domain-containing protein 1 OS=Mus musculus GN=Atad1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.864e-13
Identity = 47/127 (37.01%), Postives = 67/127 (52.76%), Query Frame = 2
Query:   59 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTG--IIVIAATNRADILDSALLR 433
            PKGVLL GPPG GKTL+AKA A EAG  F ++  S   + + G        +F  A +  P I+F+DEID+            ++       Q ++  DG + +    +IV+ ATNR   LDSA++R
Sbjct:  126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDS---FLRNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMR 249          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: ATAD1_HUMAN (ATPase family AAA domain-containing protein 1 OS=Homo sapiens GN=ATAD1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.864e-13
Identity = 47/127 (37.01%), Postives = 67/127 (52.76%), Query Frame = 2
Query:   59 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTG--IIVIAATNRADILDSALLR 433
            PKGVLL GPPG GKTL+AKA A EAG  F ++  S   + + G        +F  A +  P I+F+DEID+            ++       Q ++  DG + +    +IV+ ATNR   LDSA++R
Sbjct:  126 PKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDS---FLRNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMR 249          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: KATL2_XENLA (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus laevis GN=katnal2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.423e-13
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 2
Query:   17 LKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 274
            ++ P+ FT + +   KG+LL GPPGTGKTLLAKA+A E    FF+IS S  V  + G     VR LF+ A+ +AP  +F+DE+++V
Sbjct:  278 IRYPQLFTGILSPW-KGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESV 362          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: Y4KL_RHISN (Uncharacterized AAA family ATPase y4kL OS=Rhizobium sp. (strain NGR234) GN=NGR_a02840 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.591e-12
Identity = 43/142 (30.28%), Postives = 73/142 (51.41%), Query Frame = 2
Query:    8 VRFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLR 433
            V+  ++ +     G ++   +L  GPPG GKTL A+  A E G+P F +     +  ++G  A+ +R  F+ A++  PC++F DE DA+           ++E  + +N LL  +D  +      +IAATN    LD+A+ R
Sbjct:  101 VKEFRRADEIRQHGLKVRSKMLFCGPPGCGKTLCAEIFAAELGLPLFRVKLDRLISSYLGETATNIRKTFEFARKQ-PCVLFFDEFDAL--ARTRDDSGEHNELRRVVNSLLLFIDNMQPKG--FLIAATNLDRSLDAAIWR 237          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: YCF46_GUITH (Uncharacterized AAA domain-containing protein ycf46 OS=Guillardia theta GN=ycf46 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.830e-12
Identity = 47/144 (32.64%), Postives = 69/144 (47.92%), Query Frame = 2
Query:   14 FLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRAWTF 445
            F K+ E +   G  IPKG+LLVG  GTGK+L AK+IA E  +P   +         +G   +RVR + + A+  +PCI+++DEID               +R       +T +   E  + + V+A  N  D L   LLR   F
Sbjct:  263 FSKRAEEY---GLPIPKGLLLVGIQGTGKSLTAKSIANEWNLPLLKLDVGRLFGGIIGESEARVRQMIQFAETISPCILWIDEIDKAFTGSNFNNDSGTTKR--VFGTFITWLS--EKKSPVFVVATANNIDSLPPELLRKGRF 399          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: FIGN_DANRE (Fidgetin OS=Danio rerio GN=fign PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11
Identity = 40/139 (28.78%), Postives = 75/139 (53.96%), Query Frame = 2
Query:   23 KPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGF--EGNTGIIVIAATNRADILDSALLR 433
            +P+ F+ + A +P+ +LL GP GTG+TLL + +A + G  F  +SGS  V  ++G G   V+  F  A+   P +VF+ ++D +           N    +  ++LL ++DG        ++V+ +T++ + +D +L R
Sbjct:  486 RPDMFSGL-ATLPRSILLFGPQGTGRTLLGRCMASQLGAAFLLLSGSALVTKWLGEGEKIVQASFLIARCRQPSVVFISDVDLLLSSQLSEESPVN----RIKSELLLQLDGVLSSPEEHVLVVCSTSKPEEIDESLRR 619          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: FIGN_MOUSE (Fidgetin OS=Mus musculus GN=Fign PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.278e-11
Identity = 43/127 (33.86%), Postives = 66/127 (51.97%), Query Frame = 2
Query:   56 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEID-AVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLR 433
            +P+ +LL GP GTGKTLL + IA + G  FF I+GS  V  ++G     +   F  A+   P ++FV +ID  +           +  R + L QL T +   E    I+VI AT++ + +D +L R
Sbjct:  518 LPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWIGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVSEEHSPVSRMRTEFLMQLDTVLTSAEDQ--IVVICATSKPEEIDESLRR 642          
BLAST of EY665459 vs. ExPASy Swiss-Prot
Match: FIGN_HUMAN (Fidgetin OS=Homo sapiens GN=FIGN PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11
Identity = 43/127 (33.86%), Postives = 66/127 (51.97%), Query Frame = 2
Query:   56 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEID-AVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLR 433
            +P+ +LL GP GTGKTLL + IA + G  FF I+GS  V  ++G     +   F  A+   P ++FV +ID  +           +  R + L QL T +   E    I+VI AT++ + +D +L R
Sbjct:  518 LPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHSPVSRMRTEFLMQLDTVLTSAEDQ--IVVICATSKPEEIDESLRR 642          
The following BLAST results are available for this feature:
BLAST of EY665459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
ATD1A_DANRE1.427e-1335.43ATPase family AAA domain-containing protein 1-A OS... [more]
ATAD1_RAT1.864e-1337.01ATPase family AAA domain-containing protein 1 OS=R... [more]
ATAD1_MOUSE1.864e-1337.01ATPase family AAA domain-containing protein 1 OS=M... [more]
ATAD1_HUMAN1.864e-1337.01ATPase family AAA domain-containing protein 1 OS=H... [more]
KATL2_XENLA5.423e-1346.51Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
Y4KL_RHISN4.591e-1230.28Uncharacterized AAA family ATPase y4kL OS=Rhizobiu... [more]
YCF46_GUITH7.830e-1232.64Uncharacterized AAA domain-containing protein ycf4... [more]
FIGN_DANRE1.023e-1128.78Fidgetin OS=Danio rerio GN=fign PE=2 SV=1[more]
FIGN_MOUSE2.278e-1133.86Fidgetin OS=Mus musculus GN=Fign PE=1 SV=1[more]
FIGN_HUMAN3.886e-1133.86Fidgetin OS=Homo sapiens GN=FIGN PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-D01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665459 ID=EY665459; Name=EY665459; organism=Citrus sinensis; type=EST; length=834bp
CCCACGCGTCCGGTTCCTTAAGAAGCCTGAGAGATTTACAGCTGTTGGAG
CTCGTATTCCAAAGGGTGTTCTTCTCGTTGGTCCTCCAGGAACTGGGAAG
ACTCTTCTTGCCAAGGCAATTGCTGGTGAAGCCGGTGTTCCATTTTTCTC
CATATCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTCGGTGCATCTA
GAGTCCGAGATCTTTTCAAGAAGGCCAAAGAGAATGCTCCTTGCATTGTA
TTTGTGGATGAAATTGATGCCGTTGGAAGACAAAGAGGAACTGGAATTGG
AGGAGGGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAA
TGGATGGTTTTGAGGGTAATACTGGTATCATTGTGATTGCTGCAACTAAC
AGGGCGGACATTCTTGATTCTGCCTTATTGAGGGCCTGGACGTTTTGATA
GACAGGTTACTGTTGATGTTCCTGACATTCGAGGAAAGAACAGAGATATT
AAAAGGTTCACGGGTAGCAACAAAAAATTTGATGCAAATGGTGTCTCCTT
GATGGGAAAGCCAGAACAAACCCCTGGGTTCCAGGCTGCTGACTTTGCAA
CCCTCAAAGAACAGGCAGGCATCTTTGCGTGCGACGACGGGCGGCAAGTG
GCTATTGTATTTGAAAAAAAATGACCAATACAAGTGAAACGCAATGTTCA
TTCACACCCAACACAATCACCCTCACCAAACACGGGCAGAAACGACTGAT
AGTCGGAACGCACAAACACGCGCCCGAGAAAAAGCAAGCACCCGAAACCT
CGGAAACAATAATGCCATCATTACAACTCAGACC
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