EY665450

Overview
NameEY665450
Unique NameEY665450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: NSF_MOUSE (Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.430e-22
Identity = 70/193 (36.27%), Postives = 108/193 (55.96%), Query Frame = 1
Query:   37 VSGSELVPIYIGEGSRMVRELFVMAREHAPS--------IIFMDEIDSIGSARMESGSGNGDSEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN----LMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 576
            V+G E++  Y+GE    +R+LF  A E            II  DEID+I   R   GS  G + V  T++ +LL+++DG E  N I V+  TNR D++D+ALLRPGR++ K+E   P+E+ RL IL IH+ RM     L   +D+K++A +    SGAEL+ +   A   A+       T+ + +M  A+ ++
Sbjct:  285 VNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR---GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAMNRHIKASTKVEVDMEKAESLQ 474          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: NSF_HUMAN (Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 6.430e-22
Identity = 70/193 (36.27%), Postives = 108/193 (55.96%), Query Frame = 1
Query:   37 VSGSELVPIYIGEGSRMVRELFVMAREHAPS--------IIFMDEIDSIGSARMESGSGNGDSEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN----LMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 576
            V+G E++  Y+GE    +R+LF  A E            II  DEID+I   R   GS  G + V  T++ +LL+++DG E  N I V+  TNR D++D+ALLRPGR++ K+E   P+E+ RL IL IH+ RM     L   +D+K++A +    SGAEL+ +   A   A+       T+ + +M  A+ ++
Sbjct:  285 VNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR---GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAMNRHIKASTKVEVDMEKAESLQ 474          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: NSF_CRIGR (Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.430e-22
Identity = 70/193 (36.27%), Postives = 108/193 (55.96%), Query Frame = 1
Query:   37 VSGSELVPIYIGEGSRMVRELFVMAREHAPS--------IIFMDEIDSIGSARMESGSGNGDSEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN----LMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 576
            V+G E++  Y+GE    +R+LF  A E            II  DEID+I   R   GS  G + V  T++ +LL+++DG E  N I V+  TNR D++D+ALLRPGR++ K+E   P+E+ RL IL IH+ RM     L   +D+K++A +    SGAEL+ +   A   A+       T+ + +M  A+ ++
Sbjct:  285 VNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQR---GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAMNRHIKASTKVEVDMEKAESLQ 474          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: PEX6_PICPA (Peroxisomal biogenesis factor 6 OS=Pichia pastoris GN=PEX6 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.398e-22
Identity = 62/176 (35.23%), Postives = 102/176 (57.95%), Query Frame = 1
Query:    1 AVAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF---EASNKIKVLMATNRIDILDQALLRPGRIDRKIEF-PNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGA-SGAELKAVCTEAGMFAL 513
            A+A +    F  V G EL+ +YIGE    VR++F  AR+  P ++F DE+DS+   R     G+ +  + R + +LL +LDG    +  + + V+ ATNR D+LD+ALLRPGR D+ +    +   E +  I++  SR+ +L   +DL K+AE      +GA+  A+C++A + A+
Sbjct:  871 AIATNFALNFFSVKGPELLNMYIGESEANVRKVFQRARDAKPCVVFFDELDSVAPKR--GNQGDSEGVMDRIVSQLLAELDGMSGGDGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGVSDTHEKQSKIMEALSRKFHLHPSVDLDKVAESCPFTFTGADFYALCSDAMLNAM 1044          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.398e-22
Identity = 78/231 (33.77%), Postives = 121/231 (52.38%), Query Frame = 1
Query:    1 AVAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE--ASNK------IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQE------------------DFEMAVAKVMKKETKKNMSLAKLW 615
            AVA     TF  VS + L   + GE  RMVR LF +AR +APS IF+DEIDS+ ++R   GSG  +S  +R   ELL Q+DG    A+N+      + VL ATN    +D+AL R  R++++I  P P+ ESR  ++ I+ R + +   ++++ +A +  G SG +L  VC +A M  +R +    T++                  DFE A+ KV    +  ++   + W
Sbjct:  291 AVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSR--GGSGEHESS-RRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDDISNDPVAMCDFEEAIRKVQPSVSSSDIEKHEKW 516          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: SPAST_CHICK (Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.097e-21
Identity = 74/207 (35.75%), Postives = 117/207 (56.52%), Query Frame = 1
Query:    1 AVAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS--NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILK-IHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETKKNMSLAKL 612
            AVA  +  TF  +S + L   Y+GEG ++VR LF +ARE  PSIIF+DE+DS+   R E   G  D+  +R   E L + DG ++S  ++I V+ ATNR   LD A+LR  R  +++    PNEE+RL +LK + S++ + +   +L ++A   +G SG++L A+  +A +  +RE                 +K E  KNMS +++
Sbjct:  391 AVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERRE---GEHDAS-RRLKTEFLIEFDGVQSSGEDRILVMGATNRPQELDDAVLR--RFTKRVYVSLPNEETRLILLKNLLSKQGSPLTQKELAQLARMTDGYSGSDLTALVKDAALGPIRE-----------------LKPEQVKNMSASEM 574          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: CD48C_ARATH (Cell division control protein 48 homolog C OS=Arabidopsis thaliana GN=CDC48C PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.433e-21
Identity = 64/174 (36.78%), Postives = 98/174 (56.32%), Query Frame = 1
Query:    1 AVAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAE-KMNGASGAELKAVCTEAGMFALRE 519
            A A+     F+ + G+EL+  Y+GE    +R LF  AR  AP +IF DE+D++ ++R + G+      V+R + + L +LDG E  N + V+ ATNR D++D A LRPGR    +  P PN + R  ILK  +R+  +   +DL  IA+    G SGA+L  +  +A   A+ E
Sbjct:  581 AAANEAGANFMHIKGAELLNKYVGESELAIRTLFQRARTCAPCVIFFDEVDALTTSRGKEGAW----VVERLLNQFLVELDGGERRN-VYVIGATNRPDVVDPAFLRPGRFGNLLYVPLPNADERASILKAIARKKPIDPSVDLDGIAKNNCEGFSGADLAHLVQKATFQAVEE 749          

HSP 2 Score: 95.5153 bits (236), Expect = 3.901e-19
Identity = 63/183 (34.43%), Postives = 100/183 (54.64%), Query Frame = 1
Query:    1 AVAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQ-RTMLELLNQLDG----------FEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALR 516
            A+A+     F ++S +E++    G     +RELF  A   APSI+F+DEID+IGS R      N   E++ R + +LL  +DG            ++  + V+ ATNR D LD AL R GR + +I    P+E++R +IL + ++++ L    D K+IA    G  GA+L++V   AG  A++
Sbjct:  286 AIANEAGVPFYKISATEVISGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIGSKRE-----NQQREMEKRIVTQLLTCMDGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRRSGRFETEIALTAPDEDARAEILSVVAQKLRLEGPFDKKRIARLTPGFVGADLESVAYLAGRKAIK 463          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: SPAST_BOVIN (Spastin OS=Bos taurus GN=SPAST PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.871e-21
Identity = 72/207 (34.78%), Postives = 117/207 (56.52%), Query Frame = 1
Query:    1 AVAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS--NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILK-IHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETKKNMSLAKL 612
            AVA  +  TF  +S + L   Y+GEG ++VR LF +ARE  PSIIF+DE+DS+   R E   G  D+  +R   E L + DG +++  +++ V+ ATNR   LD+A+LR  R  +++    PNEE+RL +LK +  ++ + +   +L ++A   NG SG++L A+  +A +  +RE                 +K E  KNMS +++
Sbjct:  392 AVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERRE---GEHDAS-RRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFTKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTNGYSGSDLTALAKDAALGPIRE-----------------LKPEQVKNMSASEM 575          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEBR (Fidgetin-like protein 1 OS=Caenorhabditis briggsae GN=figl-1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.191e-21
Identity = 79/230 (34.35%), Postives = 111/230 (48.26%), Query Frame = 1
Query:    4 VAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS--NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGI-------DLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH-----------VTQEDFEMAVAKVMKKETKKNMSLAKLWE*SFPC 633
            VA     TF  +S S L   ++GEG ++VR LF +AR   PS+IF+DEIDS+ SAR ES   +     +R   E L QLDG   +   ++ VL ATNR   LD+A  R  R  +++    P  +SR  I++      NL+RG        +L+KI    +G SGA+++ +CTEA M  +RE               VT  DF  A   V        +     W+  F C
Sbjct:  369 VASQAQATFFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSARSESEHESS----RRIKTEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARR--RFQKRLYIALPEPDSRTQIVE------NLLRGTRHEITDHNLEKIRRLTDGYSGADMRQLCTEAAMGPIREIGDQIATINKDDIRAVTVADFTEAARVVRPTVDDSQLDAYAAWDKKFGC 586          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: SPAST_DROPE (Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.168e-21
Identity = 66/218 (30.28%), Postives = 117/218 (53.67%), Query Frame = 1
Query:    1 AVAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGID-LKKIAEKMNGASGAELKAVCTEAGMFALRERRI------------HVTQEDFEMAVAKVMKKETKKNMSLAKLW 615
            AVA     TF+ +S + L   Y+G+G ++VR LF +AR   PSIIF+DE+DS+ S R  SG       ++   L   + L G    ++I VL ATNR   LD+A LR  R  +++    P+E++R  +L    ++       D L+++++  +G SG++L A+  +A +  +RE  +            H+T++DF  ++ ++ +    +++SL + W
Sbjct:  565 AVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSER-SSGEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDINAMRHITEKDFHNSLKRIRRSVAPQSLSLYEKW 779          
The following BLAST results are available for this feature:
BLAST of EY665450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
NSF_MOUSE6.430e-2236.27Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 ... [more]
NSF_HUMAN6.430e-2236.27Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 ... [more]
NSF_CRIGR6.430e-2236.27Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF... [more]
PEX6_PICPA8.398e-2235.23Peroxisomal biogenesis factor 6 OS=Pichia pastoris... [more]
KTNA1_ARATH8.398e-2233.77Katanin p60 ATPase-containing subunit OS=Arabidops... [more]
SPAST_CHICK1.097e-2135.75Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1[more]
CD48C_ARATH1.433e-2136.78Cell division control protein 48 homolog C OS=Arab... [more]
SPAST_BOVIN1.871e-2134.78Spastin OS=Bos taurus GN=SPAST PE=2 SV=1[more]
FIGL1_CAEBR3.191e-2134.35Fidgetin-like protein 1 OS=Caenorhabditis briggsae... [more]
SPAST_DROPE4.168e-2130.28Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-C02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665450 ID=EY665450; Name=EY665450; organism=Citrus sinensis; type=EST; length=835bp
GCTGTGGCTCATCATACCCCTTTTACTTTCATCAGGGTTTCTGGTTCTGA
ATTAGTCCCCATTTACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTT
TTGTTATGGCAAGGGAACATGCTCCGTCTATCATTTTTATGGATGAAATT
GACAGTATCGGATCTGCCCGAATGGAATCTGGCAGCGGAAATGGTGACAG
TGAGGTGCAGAGGACTATGCTGGAGCTGCTCAACCAGCTTGATGGATTTG
AAGCATCAAACAAAATTAAGGTTCTCATGGCGACAAATCGAATTGATATT
CTCGATCAAGCTCTTCTCAGGCCAGGACGAATTGACAGAAAGATTGAATT
TCCAAATCCTAATGAAGAGTCTCGTCTTGATATCCTAAAAATTCATTCAA
GAAGAATGAATTTAATGCGTGGCATTGATTTGAAGAAGATTGCCGAGAAG
ATGAATGGTGCATCTGGTGCGGAGCTTAAGGCTGTGTGCACAGAAGCCGG
TATGTTTGCTCTAAGAGAGAGAAGGATCCATGTAACACAGGAAGATTTTG
AGATGGCAGTGGCCAAGGTCATGAAAAAAGAAACAAAGAAAAACATGTCC
TTGGCGAAGTTGTGGGAGTAATCATTTCCATGTGCTGTGCTGGGTATTTG
CTTATTTTCTGAGCAAAATTCAAGTAGCCCTTAACGGGCCTTCCTTCTGG
TTCTGGGGACATTTGCCCAATAAGCCCCTTTTTCCCTGACTGGTTGTCTT
TTCTGGCCCTCCTACCCCCCTATGGAAAACAAAATTTGCCACCCTATTTT
TATCCAAAAAAAAAAAAAAAAAAAAAAAAAAGGGG
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