EY665450

Overview
NameEY665450
Unique NameEY665450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: NSF_CAEEL (Vesicle-fusing ATPase OS=Caenorhabditis elegans GN=nsf-1 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.168e-21
Identity = 67/172 (38.95%), Postives = 99/172 (57.56%), Query Frame = 1
Query:   37 VSGSELVPIYIGEGSRMVRELFVMAREH--------APSIIFMDEIDSIGSARMESGSGNGDSEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRM----NLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFAL 513
            V+G +++  Y+GE    VR+LF  A E            II  DEID+I   R   GS  G S V  T++ +LL+++DG E  N I V+  TNR D++D+ALLRPGR++ ++E   P+E  RL ILKIH+ RM     +   +DL+ I+++    SGAEL+ +   A   A+
Sbjct:  362 VNGPQILDKYVGESESNVRKLFADAEEEWRRCGANSGLHIIIFDEIDAICKQR---GSMAGSSSVHDTVVNQLLSKMDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEVSLPDETGRLQILKIHTARMREYNKMDPNVDLEDISKRTKNFSGAELEGLVRAAQSSAM 530          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: SPAST_DANRE (Spastin OS=Danio rerio GN=spast PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.444e-21
Identity = 68/176 (38.64%), Postives = 104/176 (59.09%), Query Frame = 1
Query:    1 AVAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLM--ATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILK-IHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 519
            AVA  +  TF  +S + L   Y+GEG ++VR LF +ARE  PSIIF+DEIDS+   R E   G  D+  +R   E L + DG ++    +VL+  ATNR   LD+A+LR  R  ++I    P EE+RL +LK + S+  N +   +L ++A   +G SG++L ++  +A +  +RE
Sbjct:  347 AVAMESNATFFNISAATLTSKYVGEGEKLVRALFAVARELQPSIIFIDEIDSLLCERRE---GEHDAS-RRLKTEFLIEFDGVQSGGDERVLVMGATNRPQELDEAVLR--RFAKRIYVALPTEETRLKLLKNLLSKHRNPLSQKELSQLARLTDGYSGSDLTSLAKDAALGPIRE 516          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: PEX6_YEAST (Peroxisomal ATPase PEX6 OS=Saccharomyces cerevisiae GN=PEX6 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.444e-21
Identity = 64/174 (36.78%), Postives = 102/174 (58.62%), Query Frame = 1
Query:    1 AVAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA-SNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR-LDILKIHSRRMNLMRGIDLKKIAEKMN-GASGAELKAVCTEAGMFAL 513
            A+A +    F  V G EL+ +YIGE    VR +F  ARE  P +IF DEIDS+   R   G   G   + R + +LL +LDG    ++ + V+ ATNR D+LD+ALLRPGR D+ +    P+ +++ L+IL+  +R+  L   + L ++A+      +GA+  A+C++A + A+
Sbjct:  784 AIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKAREAKPCVIFFDEIDSVAPKRGNQGDSGG--VMDRIVSQLLAELDGMSTDADGVFVIGATNRPDLLDEALLRPGRFDKLLYLGIPDTDTKQLNILEALTRKFVLDNDVKLIELAKLCPFNYTGADFYALCSDAMLNAM 955          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: PEX6_PICAN (Peroxisomal biogenesis factor 6 OS=Pichia angusta GN=PEX6 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.110e-21
Identity = 64/176 (36.36%), Postives = 98/176 (55.68%), Query Frame = 1
Query:    1 AVAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF---EASNKIKVLMATNRIDILDQALLRPGRIDRKIEFP-NPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGA-SGAELKAVCTEAGMFAL 513
            A+A +    F  V G EL+ +YIGE    VR +F  AR+  P +IF DE+DS+   R   G   G   + R + +LL +LDG    E  + + V+ ATNR D+LD+ALLRPGR D+ +        E +  I++  +R+  L   +DL +IAE      +GA+  A+C++A + A+
Sbjct:  865 AIATNFALNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDELDSVAPKRGNQGDSGG--VMDRIVSQLLAELDGMSGAEGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGIADTHEKQAKIIQALTRKFQLDPSVDLGRIAETCPFTYTGADFYALCSDAMLNAM 1038          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: PEX6_PENCH (Peroxisomal biogenesis factor 6 OS=Penicillium chrysogenum GN=pex6 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.285e-21
Identity = 64/187 (34.22%), Postives = 102/187 (54.55%), Query Frame = 1
Query:    1 AVAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGF----EASNKIKVLMATNRIDILDQALLRPGRIDRKIEF-PNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMN-GASGAELKAVCTEAGMFALRERRIHVTQE 543
            A+A      F  V G EL+ +YIGE    VR +F  AR+  P ++F DE+DS+   R   G   G   + R + +LL +LDG     E S  + V+ ATNR D+LD ALLRPGR D+ +    +     +  IL+  +R+  L   + L ++AE++    +GA+L A+C++A + A+  +   V ++
Sbjct: 1082 AIATEFSLNFFSVKGPELLNMYIGESEANVRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSGG--VMDRIVSQLLAELDGMNGGEENSGGVFVIGATNRPDLLDTALLRPGRFDKMLYLGVSDTHRKQATILEALTRKFALHPDVSLDRVAEQLPLTYTGADLYALCSDAMLKAITRKATAVDEK 1266          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: PEX6_DEBHA (Peroxisomal biogenesis factor 6 OS=Debaryomyces hansenii GN=PEX6 PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 9.285e-21
Identity = 62/178 (34.83%), Postives = 101/178 (56.74%), Query Frame = 1
Query:    1 AVAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFE-----ASNKIKVLMATNRIDILDQALLRPGRIDRKIEFP-NPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGA-SGAELKAVCTEAGMFAL 513
            A+A +    F  V G EL+ +YIGE    VR +F  AR+  P +IF DE+DS+   R   G   G   + R + +LL +LDG         + + V+ ATNR D+LD+ALLRPGR D+ +    +  +E +  IL+  +R+  L   +DL +IA++ +   +GA+  A+C+++ + A+
Sbjct:  891 AIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDELDSVAPKRGNQGDSGG--VMDRIVSQLLAELDGMSGGAEGGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGISDTDEKQSKILEALTRKFKLADNVDLYEIAKRCSFTFTGADFYALCSDSMLNAM 1066          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: SPAST_RAT (Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.213e-20
Identity = 71/207 (34.30%), Postives = 117/207 (56.52%), Query Frame = 1
Query:    1 AVAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS--NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILK-IHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETKKNMSLAKL 612
            AVA  +  TF  +S + L   Y+GEG ++VR LF +ARE  PSIIF+DE+DS+   R E   G  D+  +R   E L + DG +++  +++ V+ ATNR   LD+A+LR  R  +++    PNEE+RL +LK +  ++ + +   +L ++A   +G SG++L A+  +A +  +RE                 +K E  KNMS +++
Sbjct:  359 AVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERRE---GEHDAS-RRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE-----------------LKPEQVKNMSASEM 542          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: SPAST_MOUSE (Spastin OS=Mus musculus GN=Spast PE=2 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 1.213e-20
Identity = 71/207 (34.30%), Postives = 117/207 (56.52%), Query Frame = 1
Query:    1 AVAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS--NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILK-IHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETKKNMSLAKL 612
            AVA  +  TF  +S + L   Y+GEG ++VR LF +ARE  PSIIF+DE+DS+   R E   G  D+  +R   E L + DG +++  +++ V+ ATNR   LD+A+LR  R  +++    PNEE+RL +LK +  ++ + +   +L ++A   +G SG++L A+  +A +  +RE                 +K E  KNMS +++
Sbjct:  392 AVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERRE---GEHDAS-RRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE-----------------LKPEQVKNMSASEM 575          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: SPAST_HUMAN (Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.213e-20
Identity = 71/207 (34.30%), Postives = 117/207 (56.52%), Query Frame = 1
Query:    1 AVAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS--NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILK-IHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETKKNMSLAKL 612
            AVA  +  TF  +S + L   Y+GEG ++VR LF +ARE  PSIIF+DE+DS+   R E   G  D+  +R   E L + DG +++  +++ V+ ATNR   LD+A+LR  R  +++    PNEE+RL +LK +  ++ + +   +L ++A   +G SG++L A+  +A +  +RE                 +K E  KNMS +++
Sbjct:  394 AVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERRE---GEHDAS-RRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE-----------------LKPEQVKNMSASEM 577          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: SPAST_DROPS (Spastin OS=Drosophila pseudoobscura pseudoobscura GN=spas PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.213e-20
Identity = 65/218 (29.82%), Postives = 117/218 (53.67%), Query Frame = 1
Query:    1 AVAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGID-LKKIAEKMNGASGAELKAVCTEAGMFALRERRI------------HVTQEDFEMAVAKVMKKETKKNMSLAKLW 615
            AVA     TF+ +S + L   Y+G+G ++VR LF +AR   PSIIF+DE+DS+ S R  SG       ++   L   + L G    ++I VL ATNR   LD+A LR  R  +++    P+E++R  +L    ++       D L+++++  +G SG++L A+  +A +  +RE  +            H+T++DF  ++ ++ +   ++++S  + W
Sbjct:  565 AVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSER-SSGEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDINAMRHITEKDFHNSLKRIRRSVAQQSLSSYEKW 779          
The following BLAST results are available for this feature:
BLAST of EY665450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
NSF_CAEEL4.168e-2138.95Vesicle-fusing ATPase OS=Caenorhabditis elegans GN... [more]
SPAST_DANRE5.444e-2138.64Spastin OS=Danio rerio GN=spast PE=2 SV=2[more]
PEX6_YEAST5.444e-2136.78Peroxisomal ATPase PEX6 OS=Saccharomyces cerevisia... [more]
PEX6_PICAN7.110e-2136.36Peroxisomal biogenesis factor 6 OS=Pichia angusta ... [more]
PEX6_PENCH9.285e-2134.22Peroxisomal biogenesis factor 6 OS=Penicillium chr... [more]
PEX6_DEBHA9.285e-2134.83Peroxisomal biogenesis factor 6 OS=Debaryomyces ha... [more]
SPAST_RAT1.213e-2034.30Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1[more]
SPAST_MOUSE1.213e-2034.30Spastin OS=Mus musculus GN=Spast PE=2 SV=3[more]
SPAST_HUMAN1.213e-2034.30Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1[more]
SPAST_DROPS1.213e-2029.82Spastin OS=Drosophila pseudoobscura pseudoobscura ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-C02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665450 ID=EY665450; Name=EY665450; organism=Citrus sinensis; type=EST; length=835bp
GCTGTGGCTCATCATACCCCTTTTACTTTCATCAGGGTTTCTGGTTCTGA
ATTAGTCCCCATTTACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTT
TTGTTATGGCAAGGGAACATGCTCCGTCTATCATTTTTATGGATGAAATT
GACAGTATCGGATCTGCCCGAATGGAATCTGGCAGCGGAAATGGTGACAG
TGAGGTGCAGAGGACTATGCTGGAGCTGCTCAACCAGCTTGATGGATTTG
AAGCATCAAACAAAATTAAGGTTCTCATGGCGACAAATCGAATTGATATT
CTCGATCAAGCTCTTCTCAGGCCAGGACGAATTGACAGAAAGATTGAATT
TCCAAATCCTAATGAAGAGTCTCGTCTTGATATCCTAAAAATTCATTCAA
GAAGAATGAATTTAATGCGTGGCATTGATTTGAAGAAGATTGCCGAGAAG
ATGAATGGTGCATCTGGTGCGGAGCTTAAGGCTGTGTGCACAGAAGCCGG
TATGTTTGCTCTAAGAGAGAGAAGGATCCATGTAACACAGGAAGATTTTG
AGATGGCAGTGGCCAAGGTCATGAAAAAAGAAACAAAGAAAAACATGTCC
TTGGCGAAGTTGTGGGAGTAATCATTTCCATGTGCTGTGCTGGGTATTTG
CTTATTTTCTGAGCAAAATTCAAGTAGCCCTTAACGGGCCTTCCTTCTGG
TTCTGGGGACATTTGCCCAATAAGCCCCTTTTTCCCTGACTGGTTGTCTT
TTCTGGCCCTCCTACCCCCCTATGGAAAACAAAATTTGCCACCCTATTTT
TATCCAAAAAAAAAAAAAAAAAAAAAAAAAAGGGG
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