EY665450

Overview
NameEY665450
Unique NameEY665450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: SPAST_DROYA (Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.287e-19
Identity = 64/221 (28.96%), Postives = 120/221 (54.30%), Query Frame = 1
Query:    1 AVAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS---NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR-LDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH------------VTQEDFEMAVAKVMKKETKKNMSLAKLW 615
            AVA     TF+ +S + L   Y+G+G ++VR LF +AR   PSIIF+DE+DS+ S R    S +     +R   E L + DG   +   ++I VL ATNR   LD+A LR  R  +++    P+E++R L + ++  ++ + +    L+++A+  +G SG++L A+  +A +  +RE  +             +T++DF  ++ ++ +    ++++  + W
Sbjct:  535 AVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER----SSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKW 749          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: SPAST_DROSE (Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.287e-19
Identity = 64/221 (28.96%), Postives = 120/221 (54.30%), Query Frame = 1
Query:    1 AVAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS---NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR-LDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH------------VTQEDFEMAVAKVMKKETKKNMSLAKLW 615
            AVA     TF+ +S + L   Y+G+G ++VR LF +AR   PSIIF+DE+DS+ S R    S +     +R   E L + DG   +   ++I VL ATNR   LD+A LR  R  +++    P+E++R L + ++  ++ + +    L+++A+  +G SG++L A+  +A +  +RE  +             +T++DF  ++ ++ +    ++++  + W
Sbjct:  535 AVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER----SSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKW 749          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: SPAST_DROME (Spastin OS=Drosophila melanogaster GN=spas PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.287e-19
Identity = 64/221 (28.96%), Postives = 120/221 (54.30%), Query Frame = 1
Query:    1 AVAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS---NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR-LDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH------------VTQEDFEMAVAKVMKKETKKNMSLAKLW 615
            AVA     TF+ +S + L   Y+G+G ++VR LF +AR   PSIIF+DE+DS+ S R    S +     +R   E L + DG   +   ++I VL ATNR   LD+A LR  R  +++    P+E++R L + ++  ++ + +    L+++A+  +G SG++L A+  +A +  +RE  +             +T++DF  ++ ++ +    ++++  + W
Sbjct:  535 AVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER----SSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKW 749          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: SPAST_DROER (Spastin OS=Drosophila erecta GN=spas PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.287e-19
Identity = 64/221 (28.96%), Postives = 120/221 (54.30%), Query Frame = 1
Query:    1 AVAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS---NKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR-LDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIH------------VTQEDFEMAVAKVMKKETKKNMSLAKLW 615
            AVA     TF+ +S + L   Y+G+G ++VR LF +AR   PSIIF+DE+DS+ S R    S +     +R   E L + DG   +   ++I VL ATNR   LD+A LR  R  +++    P+E++R L + ++  ++ + +    L+++A+  +G SG++L A+  +A +  +RE  +             +T++DF  ++ ++ +    ++++  + W
Sbjct:  535 AVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER----SSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKW 749          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: SPAST_DICDI (Spastin OS=Dictyostelium discoideum GN=DDB_G0287165 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.287e-19
Identity = 71/224 (31.70%), Postives = 114/224 (50.89%), Query Frame = 1
Query:    1 AVAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLM--ATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILK--IHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQ-----------EDFEMAVAKVMKKETKKNMSLAKLWE*SF 627
            AVA+ +  TF  +S S L   Y+G+G ++VR LF +A    PSIIF+DEIDS+ + R    S N     +R   E+L Q DG   +   +VL+  ATNR + LD A LR  R+ ++I    P  E+RL I++  +  +R +L +   +  +AE   G SG +L A+C +A    +R   I +             +DF  ++ ++    T +++   + W   F
Sbjct:  436 AVAYESKVTFFSISSSSLTSKYVGDGEKLVRALFAVATHFQPSIIFIDEIDSLLTER----SSNESEASRRLKTEILVQFDGARTNGDERVLVMGATNRPEDLDDAALR--RLVKRIYVGLPELETRLQIIQHLLVGQRHSLTKQ-QINSLAEVTQGYSGFDLAALCKDAAYEPIRRLGIGIKDLELNEISLISFKDFANSLKQIRPSVTSQSLKSFEKWNQKF 652          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: PEX6_YARLI (Peroxisomal biogenesis factor 6 OS=Yarrowia lipolytica GN=PEX6 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.987e-19
Identity = 59/175 (33.71%), Postives = 97/175 (55.43%), Query Frame = 1
Query:    1 AVAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEAS--NKIKVLMATNRIDILDQALLRPGRIDRKIEFP-NPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGA-SGAELKAVCTEAGMFAL 513
            A+A      F  V G EL+ +YIGE    VR +F  AR+  P ++F DE+DS+   R   G   G   + R + +LL +LDG   +    + V+ ATNR D+LD+ALLRPGR D+ +    +   E +  I++  +R+  L   + L+ I+++     +GA+  A+C++A + A+
Sbjct:  771 AIATTFSLNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVVFFDELDSVAPQRGNQGDSGG--VMDRIVSQLLAELDGMSTAGGEGVFVVGATNRPDLLDEALLRPGRFDKMLYLGISDTHEKQQTIMEALTRKFRLAADVSLEAISKRCPFTFTGADFYALCSDAMLNAM 943          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: PEX6_CANGA (Peroxisomal biogenesis factor 6 OS=Candida glabrata GN=PEX6 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.901e-19
Identity = 58/174 (33.33%), Postives = 96/174 (55.17%), Query Frame = 1
Query:    1 AVAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEA-SNKIKVLMATNRIDILDQALLRPGRIDRKIEFP-NPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMN-GASGAELKAVCTEAGMFAL 513
            A+A +    F  V G EL+ +YIGE    VR +F  AR+  P +IF DE+DS+   R   G   G   + R + +LL +LDG  +  + + ++ ATNR D+LD+ALLRPGR D+ I        E + +I++  +R+  +   I+  ++        +GA+  A+C++A + A+
Sbjct:  770 AIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDEVDSVAPKRGNQGDSGG--VMDRIVSQLLAELDGMSSDGDGVFIIGATNRPDLLDEALLRPGRFDKLIYLGIADTREKQANIMRALTRKFKVSSDINFDELVSDFPFSYTGADFYALCSDAMLKAM 941          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: FTSHC_ARATH (Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.901e-19
Identity = 62/209 (29.67%), Postives = 104/209 (49.76%), Query Frame = 1
Query:    4 VAHHTPFTFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG---------FEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETKKNMSL 603
            +A  +   F+  SG+E        G+  + E+F +AR +AP+ +F+DEID+I            D   + T   L+ QLDG         F     +  + ATNR D LD   +R GRIDR++    P+ + R+ I  +HS   NL   ID  K+  +  G SGA+++ +  EA + ++R+ R ++ Q+D    +  V+ K+  + M +
Sbjct:  546 LAKESGLPFVFASGAEFTDSE-KSGAAKINEMFSIARRNAPAFVFVDEIDAIAGRHARK-----DPRRRATFEALIAQLDGEKEKTGIDRFSLRQAVIFICATNRPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSAGKNLAEDIDFGKLVFRTVGFSGADIRNLVNEAAIMSVRKGRSYIYQQD----IVDVLDKQLLEGMGV 744          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.095e-19
Identity = 60/167 (35.93%), Postives = 93/167 (55.69%), Query Frame = 1
Query:   25 TFIRVSGSELVPIYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNK-IKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIH-SRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 519
            TF  +S S+LV  ++GE  ++V+ LF +ARE+ PSIIF+DEIDS+  +R E    N     +R   E L Q+ G    N  I VL ATN   +LD A+ R  R +++I  P P   +R  + K+H     N +   D +++  K +G SGA++  +  +A M  +R+
Sbjct:  195 TFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE----NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 355          
BLAST of EY665450 vs. ExPASy Swiss-Prot
Match: NSF_DICDI (Vesicle-fusing ATPase OS=Dictyostelium discoideum GN=nsfA PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.095e-19
Identity = 67/205 (32.68%), Postives = 104/205 (50.73%), Query Frame = 1
Query:   37 VSGSELVPIYIGEGSRMVRELFVMAR--------EHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMN----LMRGIDLKKIAEKMNGASGAELKAVCTEAGMFA--------------LRERRIHVTQEDFEMAVAKV 570
            VSG  ++  Y+G+    +R LF  A         +    II  DE+D+I  +R   GS  GDS V  +++ +LL  +DG E+ N I V+  TNR D++D+ALLRPGR++  +E   P+E  R  I KIH+ +M     L + ++L   A      SGAE++ V   A  +A              ++   I V  +DF+ A+ +V
Sbjct:  289 VSGPSILNKYVGQSEENIRMLFRDAEIEQKAKGDDSGLHIIIFDELDAICKSR---GSRQGDSGVGDSVVNQLLAMIDGVESLNNILVIGMTNRKDMIDEALLRPGRLEVHVEISLPDEHGREQIFKIHTAKMRDQNALDKDVNLANYAHTTRNYSGAEIEGVVKSAASYAFSRQVDTKNIKNVEIKPEDIKVCDQDFKRAITEV 490          
The following BLAST results are available for this feature:
BLAST of EY665450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
SPAST_DROYA2.287e-1928.96Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1[more]
SPAST_DROSE2.287e-1928.96Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1[more]
SPAST_DROME2.287e-1928.96Spastin OS=Drosophila melanogaster GN=spas PE=1 SV... [more]
SPAST_DROER2.287e-1928.96Spastin OS=Drosophila erecta GN=spas PE=3 SV=1[more]
SPAST_DICDI2.287e-1931.70Spastin OS=Dictyostelium discoideum GN=DDB_G028716... [more]
PEX6_YARLI2.987e-1933.71Peroxisomal biogenesis factor 6 OS=Yarrowia lipoly... [more]
PEX6_CANGA3.901e-1933.33Peroxisomal biogenesis factor 6 OS=Candida glabrat... [more]
FTSHC_ARATH3.901e-1929.67Cell division protease ftsH homolog 12, chloroplas... [more]
VPS4B_HUMAN5.095e-1935.93Vacuolar protein sorting-associated protein 4B OS=... [more]
NSF_DICDI5.095e-1932.68Vesicle-fusing ATPase OS=Dictyostelium discoideum ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-C02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665450 ID=EY665450; Name=EY665450; organism=Citrus sinensis; type=EST; length=835bp
GCTGTGGCTCATCATACCCCTTTTACTTTCATCAGGGTTTCTGGTTCTGA
ATTAGTCCCCATTTACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTT
TTGTTATGGCAAGGGAACATGCTCCGTCTATCATTTTTATGGATGAAATT
GACAGTATCGGATCTGCCCGAATGGAATCTGGCAGCGGAAATGGTGACAG
TGAGGTGCAGAGGACTATGCTGGAGCTGCTCAACCAGCTTGATGGATTTG
AAGCATCAAACAAAATTAAGGTTCTCATGGCGACAAATCGAATTGATATT
CTCGATCAAGCTCTTCTCAGGCCAGGACGAATTGACAGAAAGATTGAATT
TCCAAATCCTAATGAAGAGTCTCGTCTTGATATCCTAAAAATTCATTCAA
GAAGAATGAATTTAATGCGTGGCATTGATTTGAAGAAGATTGCCGAGAAG
ATGAATGGTGCATCTGGTGCGGAGCTTAAGGCTGTGTGCACAGAAGCCGG
TATGTTTGCTCTAAGAGAGAGAAGGATCCATGTAACACAGGAAGATTTTG
AGATGGCAGTGGCCAAGGTCATGAAAAAAGAAACAAAGAAAAACATGTCC
TTGGCGAAGTTGTGGGAGTAATCATTTCCATGTGCTGTGCTGGGTATTTG
CTTATTTTCTGAGCAAAATTCAAGTAGCCCTTAACGGGCCTTCCTTCTGG
TTCTGGGGACATTTGCCCAATAAGCCCCTTTTTCCCTGACTGGTTGTCTT
TTCTGGCCCTCCTACCCCCCTATGGAAAACAAAATTTGCCACCCTATTTT
TATCCAAAAAAAAAAAAAAAAAAAAAAAAAAGGGG
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