EY665449

Overview
NameEY665449
Unique NameEY665449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665449_ssr160 microsatellite EY665449_ssr160:160..171. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.554e-39
Identity = 95/219 (43.38%), Postives = 134/219 (61.19%), Query Frame = 1
Query:   61 QFSGLRNSASLPFGRKSSDD-FHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLGHRPCD*RDRSVCRKRGCGQAHSGWCQESTYYSPPERVTSQPYRCWGSNAECFTSQMNPIIRNASWHNQLPCPLSSRVLDQK 714
            +FSGL++++ + +   + D  F+ V+A Q ++  + S+  + V   AKLKVAINGFGRIGRNFLRCWHGRKDSPLEV+ +ND+GGVK ASHLLKYDS LG F+A+VK +  + I+VDGK I+VVS+R+P+ LPW  LG               G G+ H     +    + P +    P    G N + +  ++  II NAS       P  ++VLD++
Sbjct:   39 EFSGLKSTSCISYVHSARDSSFYDVVAAQLTSKANGSTAVKGVTV-AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVKNASHLLKYDSMLGTFKAEVKILNNETITVDGKPIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGK-HIQAGAKKVIITAPAKGADIPTYVIGVNEQDYGHEVADIISNASCTTNCLAPF-AKVLDEE 254          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 5.000e-38
Identity = 100/219 (45.66%), Postives = 128/219 (58.45%), Query Frame = 1
Query:   58 SQFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLGHRPCD*RDRSVCRKRGCGQAHSGWCQESTYYSPPERVTSQPYRCWGSNAECFTSQMNPIIRNASWHNQLPCPLSSRVLDQK 714
            ++FSGLR S+    G ++S  F   +A Q      ++S   +    AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVV +ND+GGVK ASHLLKYDS LG F+A+VK V  + ISVDGK+I+VVSNR+P+ LPW  LG               G G+ H          + P +    P    G N + +   +  II NAS       P  ++VLD++
Sbjct:   39 AEFSGLRMSS---IGGEAS--FFDAVAAQIIPKAVTTSTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVLNDSGGVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGK-HIQAGASKVIITAPAKGADIPTYVMGVNEQDYGHDVANIISNASCTTNCLAPF-AKVLDEE 250          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P2_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena sp. (strain PCC 7120) GN=gap2 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.568e-36
Identity = 47/86 (54.65%), Postives = 63/86 (73.26%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 459
            ++VAINGFGRIGRNF RCW GR+++ +E+VA+NDT   +  +HLLKYDS LG  +        + I+V+GK I+ VS+RNP NLPW
Sbjct:    2 IRVAINGFGRIGRNFARCWLGRENTNIELVAVNDTSDPRTNAHLLKYDSMLGKLKNVDITADDNSITVNGKTIKCVSDRNPENLPW 87          

HSP 2 Score: 73.9442 bits (180), Expect = 2.568e-36
Identity = 54/114 (47.37%), Postives = 64/114 (56.14%), Query Frame = 2
Query:  443 PSISPGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPSYTWGNQRLL 784
            P   P  +  IDL+IE TGVFV +EGA KHI AGAKKVLITAP K  + + T V G   +               TTNCLAP  +      FGII+G+    H SYT G+QRLL
Sbjct:   82 PENLPWKEWEIDLIIEATGVFVSKEGATKHINAGAKKVLITAPGK--NEDGTFVMGVNHHDYDHNLHNIISNASCTTNCLAPIAK-VLNDKFGIIKGSMTTTH-SYT-GDQRLL 190          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 9.632e-36
Identity = 48/86 (55.81%), Postives = 63/86 (73.26%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 459
            ++VAINGFGRIGRNF RCW GR++S +E+VA+NDT   +  +HLLKYDS LG  +        + I+V+GK I+ VS+RNP NLPW
Sbjct:    2 IRVAINGFGRIGRNFARCWLGRENSNIELVAVNDTSDPRTNAHLLKYDSMLGKLKNVDITADDNSITVNGKTIKCVSDRNPENLPW 87          

HSP 2 Score: 70.8626 bits (172), Expect = 9.632e-36
Identity = 52/114 (45.61%), Postives = 63/114 (55.26%), Query Frame = 2
Query:  443 PSISPGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPSYTWGNQRLL 784
            P   P  +  IDL+IE TGVF  +EGA KH+ AGAKKVLITAP K  + + T V G   +               TTNCLAP  +      FGII+G+    H SYT G+QRLL
Sbjct:   82 PENLPWKEWEIDLIIESTGVFTSKEGALKHVNAGAKKVLITAPGK--NEDGTFVIGVNHHDYDHNVHHIISNASCTTNCLAPIAK-VLNDKFGIIKGSMTTTH-SYT-GDQRLL 190          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3PA_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.533e-31
Identity = 79/159 (49.69%), Postives = 100/159 (62.89%), Query Frame = 1
Query:    7 ATLSVSKSALQGNGKGFSQFSGLRN---SASLPFGRKSS-----DDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 459
            AT   S   +QG    F+QFSG++    S+ L   +  S      D +     + S + +++ G        K++VAINGFGRIGRNF+RCW GR DS +EVV INDT GVK ASHLLKYDS LG F+ADV   G D ISV+GK I++VSNRNP+ LPW
Sbjct:   12 ATTKSSVCQVQGRST-FAQFSGMKKVNQSSRLQPAQSGSAFGGYSDANDAFYTRVSGIVAATFG-----PTMKVRVAINGFGRIGRNFIRCWAGRSDSNMEVVCINDTSGVKTASHLLKYDSILGTFDADVS-AGEDTISVNGKTIKIVSNRNPLQLPW 163          

HSP 2 Score: 80.1073 bits (196), Expect = 1.730e-14
Identity = 53/124 (42.74%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  413 RSSRLFLTATPSISPGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPSYTWGNQRLL 784
            ++ ++     P   P  ++ ID+V+E TGVFV+  GAGKHI+AGAKKVLITAP KG      VVG   ++    +    S     TTNC+APF++      FG+++G     H SYT G+QRLL
Sbjct:  148 KTIKIVSNRNPLQLPWKEMNIDIVVEATGVFVDAPGAGKHIEAGAKKVLITAPGKGDGIGTFVVGVNEKDYSHDKYDIVSNASC-TTNCMAPFMK-VLDDEFGVVRGMMTTTH-SYT-GDQRLL 267          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_BACCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus coagulans GN=gap PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 6.514e-27
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            +KV INGFGRIGRN  R     K+  +EVVA+ND T      +HLLKYDS  G  +A+V  V  DG+SV+GK I V + RNP NL WG +G
Sbjct:    3 VKVGINGFGRIGRNVFRA--AVKNPDIEVVAVNDLTANADGLAHLLKYDSVHGRLDAEV--VVNDGVSVNGKEIIVKAERNPENLAWGEIG 89          

HSP 2 Score: 59.6918 bits (143), Expect = 6.514e-27
Identity = 35/77 (45.45%), Postives = 47/77 (61.04%), Query Frame = 2
Query:  461 GDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPF 691
            G++G+D+V+E TG F +RE A KH++AGAKKV+I+AP K    N TVV G  ++   A           TT CLA F
Sbjct:   86 GEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAK--VENITVVMGVNQDKYDADAHHVISNASCTTICLAAF 160          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.773e-27
Identity = 60/82 (73.17%), Postives = 69/82 (84.15%), Query Frame = 1
Query:  217 NGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWG 462
            NGFGRIGRNFLRC   R++S LEV+AIND+GGVKQASHLLKYDSTLG F+ADVK V    ISV+GK I+VVS+R+P  LPWG
Sbjct:    1 NGFGRIGRNFLRCLETRQNSLLEVIAINDSGGVKQASHLLKYDSTLGKFDADVKIVDDGHISVNGKSIRVVSSRDPTKLPWG 82          

HSP 2 Score: 91.6633 bits (226), Expect = 5.747e-18
Identity = 61/128 (47.66%), Postives = 81/128 (63.28%), Query Frame = 2
Query:  413 RSSRLFLTATPSISPGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLG----TTNCLAPFLQGSWTKSFGIIQGNPDHPHPSYTWGNQRLL 784
            +S R+  +  P+  P G++ IDLVIEGTGVF++  GA KHI+AGAKKVLITAP KG    PT V G     + A     S+ ++     TTNCLAPF++    + FGI++G   + H SYT G+QRLL
Sbjct:   66 KSIRVVSSRDPTKLPWGEMEIDLVIEGTGVFIDTPGASKHIEAGAKKVLITAPAKG-SDIPTYVVG-----VNAHDYKHSDAIISNASCTTNCLAPFVK-VLDEKFGIVKGTMTNTH-SYT-GDQRLL 184          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_HAEIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Haemophilus influenzae GN=gapA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.744e-25
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            +K+ INGFGRIGR   R    R D  +EVV IND   V+  +++LKYDST G F+  V+ V    + V+GK I+V + R+P NL WG +G
Sbjct:    3 IKIGINGFGRIGRIVFRAAQHRDD--IEVVGINDLIDVEYMAYMLKYDSTHGRFDGTVE-VKDGNLVVNGKTIRVTAERDPANLNWGAIG 89          

HSP 2 Score: 58.5362 bits (140), Expect = 9.744e-25
Identity = 39/91 (42.86%), Postives = 51/91 (56.04%), Query Frame = 2
Query:  461 GDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQG 733
            G +G+D+ +E TG+F+  E A KHI AGAKKV++T P K     P  V G   NA   +   S+     TTNCLAP L     ++FGI  G
Sbjct:   86 GAIGVDIAVEATGLFLTDETARKHITAGAKKVVLTGPSK--DATPMFVRGVNFNAYAGQDIVSNASC--TTNCLAP-LARVVHETFGIKDG 171          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P1_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus subtilis GN=gapA PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.638e-24
Identity = 40/90 (44.44%), Postives = 54/90 (60.00%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            +KV INGFGRIGRN  R      +  +EVVA+ND       +HLL+YDS  G  +A+V  V  + + V+GK I+V + R+P  L WG  G
Sbjct:    3 VKVGINGFGRIGRNVFRA--ALNNPEVEVVAVNDLTDANMLAHLLQYDSVHGKLDAEVS-VDGNNLVVNGKTIEVSAERDPAKLSWGKQG 89          

HSP 2 Score: 60.4622 bits (145), Expect = 3.638e-24
Identity = 42/107 (39.25%), Postives = 56/107 (52.34%), Query Frame = 2
Query:  461 GDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPSYTWGNQRL 781
            G  G+++V+E TG F +R  A KH++AGAKKV+I+AP      + T+V G   +   A           TTNCLAPF +      FGI +G     H SYT   Q L
Sbjct:   86 GKQGVEIVVESTGFFTKRADAAKHLEAGAKKVIISAPAN--EEDITIVMGVNEDKYDAANHDVISNASCTTNCLAPFAK-VLNDKFGIKRGMMTTVH-SYTNDQQIL 188          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_BUCAI (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=gapA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.767e-23
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGL 468
            +KV INGFGRIGR   R    +K S +E++AIND    +  +++LKYDST G+F+  +     D I ++GK I+V S ++P  L W  L
Sbjct:    3 IKVGINGFGRIGRVLFRL--AQKRSDIEIIAINDLLAPEYIAYMLKYDSTHGVFKKHI-TFDKDNIIINGKNIRVTSIKDPEKLMWHDL 88          

HSP 2 Score: 62.7734 bits (151), Expect = 1.767e-23
Identity = 44/98 (44.90%), Postives = 55/98 (56.12%), Query Frame = 2
Query:  464 DLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPS 757
            DL ID+VIE TG+F++RE A KHI AG+KKV++T P K     P  V G   +  Q     S+     TTNCLAP L      +FGII+G     H S
Sbjct:   87 DLSIDVVIESTGLFLKREQAYKHILAGSKKVVVTGPSK--DDIPMFVRGANFHKYQGESIVSNASC--TTNCLAP-LSKVIDDNFGIIEGLMTTVHAS 179          
The following BLAST results are available for this feature:
BLAST of EY665449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
G3PB_PEA1.554e-3943.38Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_ARATH5.000e-3845.66Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3P2_ANASP2.568e-3654.65Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P2_ANAVT9.632e-3655.81Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3PA_CHOCR4.533e-3149.69Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P_BACCO6.514e-2752.75Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3PA_SCEVA6.773e-2773.17Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_HAEIN9.744e-2546.67Glyceraldehyde-3-phosphate dehydrogenase OS=Haemop... [more]
G3P1_BACSU3.638e-2444.44Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P_BUCAI1.767e-2342.70Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665449 ID=EY665449; Name=EY665449; organism=Citrus sinensis; type=EST; length=850bp
GCTTCGGCCACTCTCTCTGTATCCAAATCAGCTCTTCAGGGAAATGGTAA
GGGATTCTCACAATTCTCAGGTCTACGCAACTCTGCAAGCCTTCCTTTTG
GCAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCT
GCTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAA
GCTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGA
GGTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAAT
GACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCAC
CCTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCT
CTGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAAT
CTCCCCTGGGGGGGACTTGGGCATCGACCTTGTGATTGAAGGGACAGGAG
TGTTTGTAGAAAGAGAGGGTGCGGGCAAGCACATTCAGGCTGGTGCCAAG
AAAGTACTTATTACAGCCCCCCGGAAAGGGTGACATCCCAACCCTACCGT
TGTTGGGGGTCCAATGCGGAATGCTTTACAAGCCAGATGAACCCCATCAT
CAGAAATGCTTCTTGGCACAACCAACTGCCTTGCCCCCTTTCTTCAAGGG
TCTTGGACCAAAAGCTTTGGCATTATTCAGGGAAACCCTGACCACCCACA
CCCCTCCTACACTTGGGGGAACCAAAGGTTACTCCCAAGCTAACCCACCG
GGAACCTAGGGGGAAAAAAAAAAAGCTGCAATCCAAATGTGCCCCAAAAT
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