EY665449

Overview
NameEY665449
Unique NameEY665449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665449_ssr160 microsatellite EY665449_ssr160:160..171. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P2_RHOSH (Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhodobacter sphaeroides GN=gapB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.066e-23
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGL 468
            ++VAINGFGRIGRN LR       + +EVVAIND G V+  +HLL++DS  G F A V   G D I V    I+V + RNP  LPW G+
Sbjct:    3 IRVAINGFGRIGRNVLRAIVESGRTDIEVVAINDLGQVETNAHLLRFDSVHGRFPAKVTS-GDDWIDVGRGPIKVTAIRNPAELPWAGV 90          

HSP 2 Score: 49.6766 bits (117), Expect = 5.066e-23
Identity = 30/73 (41.10%), Postives = 42/73 (57.53%), Query Frame = 2
Query:  470 GIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAP 688
            G+D+ +E TG+F  +E A  H+Q GAK+VL++AP  G   + T+V G     L A     S     TTNCL+P
Sbjct:   89 GVDMAMECTGIFTTKEKAAAHLQNGAKRVLVSAPCDG--ADRTIVYGVNHATLTADDLVVSNASC-TTNCLSP 158          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_BUCBP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=gapA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.116e-22
Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGL 468
            +K+ INGFGRIGR   R    R  S +E++AIND   V+  +++LKYDS  G F   +  +  + + V+GK I++ + ++P NL WG L
Sbjct:    3 IKIGINGFGRIGRVLFRLAQLR--SNIEILAINDLINVQYIAYMLKYDSIHGNFNGKI-VIKNETLFVNGKKIRITNEKDPKNLMWGDL 88          

HSP 2 Score: 62.3882 bits (150), Expect = 1.116e-22
Identity = 42/91 (46.15%), Postives = 52/91 (57.14%), Query Frame = 2
Query:  461 GDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQG 733
            GDL ID+VIE TG+F+  E + KHIQAGAKKV+IT+P K     P  V G   N    +   S+     TTNCLAP L       F I++G
Sbjct:   86 GDLNIDVVIESTGIFLTTEDSYKHIQAGAKKVIITSPPK--DNTPMFVRGVNFNEYVGQKIVSNASC--TTNCLAP-LAKVINDEFEIVEG 171          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 5.413e-22
Identity = 41/90 (45.56%), Postives = 54/90 (60.00%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGL 468
            +++AINGFGRIGR  LR    RKD  +EVVA+ND       A++++KYDST G ++  V       I +DG  I     R+P NLPWG L
Sbjct:    2 IRIAINGFGRIGRLVLRLALQRKD--IEVVAVNDPFISNDYAAYMVKYDSTHGRYKGTVSH-DDKHIIIDGVKIATYQERDPANLPWGSL 88          

HSP 2 Score: 58.9214 bits (141), Expect = 5.413e-22
Identity = 42/100 (42.00%), Postives = 54/100 (54.00%), Query Frame = 2
Query:  443 PSISPGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLG---TTNCLAPFLQGSWTKSFGIIQG 733
            P+  P G L ID+ ++ TGVF E + A KHI AGAKKV+ITAP       P  V G        + TP  +++     TTNCLAP L      +FGI +G
Sbjct:   80 PANLPWGSLKIDVAVDSTGVFKELDTAQKHIDAGAKKVVITAPSSS---APMFVVG----VNHTKYTPDKKIVSNASCTTNCLAP-LAKVINDAFGIEEG 171          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P2_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Bacillus subtilis GN=gapB PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.039e-22
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 1
Query:  199 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 459
            K+KVAINGFGRIGR   R      D  ++VVAIN +   +  +HL+KYD+  G ++ +V   G D + V+GK + ++++R+P  LPW
Sbjct:    2 KVKVAINGFGRIGRMVFR--KAMLDDQIQVVAINASYSAETLAHLIKYDTIHGRYDKEV-VAGEDSLIVNGKKVLLLNSRDPKQLPW 85          

HSP 2 Score: 55.4546 bits (132), Expect = 7.039e-22
Identity = 41/116 (35.34%), Postives = 57/116 (49.14%), Query Frame = 2
Query:  443 PSISPGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQG-------------NPDHPH 751
            P   P  +  ID+V+E TG F  ++ A  HI+AGAKKV++TAP K  + + T+V G   +   A           TTNCLAP ++    + FGI  G             N D+PH
Sbjct:   80 PKQLPWREYDIDIVVEATGKFNAKDKAMGHIEAGAKKVILTAPGK--NEDVTIVMGVNEDQFDAERHVIISNASCTTNCLAPVVK-VLDEEFGIESGLMTTVHAYTNDQKNIDNPH 192          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_CORGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Corynebacterium glutamicum GN=gap PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 9.162e-22
Identity = 43/86 (50.00%), Postives = 53/86 (61.63%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 459
            ++V INGFGRIGRNF R    R D  LEVVA+ND    K  S LLK+DS +G    +V+    D I+V GK I V + R+P NL W
Sbjct:    3 IRVGINGFGRIGRNFFRAVLERSDD-LEVVAVNDLTDNKTLSTLLKFDSIMGRLGQEVE-YDDDSITVGGKRIAVYAERDPKNLDW 86          

HSP 2 Score: 52.373 bits (124), Expect = 9.162e-22
Identity = 41/107 (38.32%), Postives = 56/107 (52.34%), Query Frame = 2
Query:  473 IDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLG----TTNCLAPFLQGSWTKSFGIIQGNPDHPHPSYTWGNQRL 781
            +D+VIE TG F +   A  HI+AGAKKV+I+AP    + + T V G    +      P +  ++     TTNCLAP  +      FGI  G     H +YT G+QRL
Sbjct:   91 VDIVIESTGFFTDANAAKAHIEAGAKKVIISAPAS--NEDATFVYGVNHESYD----PENHNVISGASCTTNCLAPMAK-VLNDKFGIENGLMTTVH-AYT-GDQRL 188          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_CHLMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia muridarum GN=gap PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.440e-21
Identity = 41/97 (42.27%), Postives = 58/97 (59.79%), Query Frame = 2
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLG----TTNCLAPFLQGSWTKSFGIIQG 733
            P  DL +D+V+E TG+FV ++ A KH+ +GAK+VLITAP KG    PT V G           P++++++     TTNCLAP L      +FGI +G
Sbjct:   83 PWKDLDVDVVVESTGLFVNKDDAAKHLDSGAKRVLITAPAKG--DVPTFVMGVNHQKFD----PANDVIISNASCTTNCLAP-LAKVLLDNFGIEEG 172          

HSP 2 Score: 56.225 bits (134), Expect = 4.440e-21
Identity = 36/90 (40.00%), Postives = 55/90 (61.11%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG-KVIQVVSNRNPVNLPWGGL 468
            +++ INGFGRIGR  LR    ++++P+EVVAIND       ++L KYDST G F +  +   +DG  V G + I+ ++ ++   LPW  L
Sbjct:    1 MRIVINGFGRIGRLVLRQIL-KRNAPIEVVAINDLVSGDLLTYLFKYDSTHGSFAS--QATFSDGCLVVGERKIRFLAEKDVQKLPWKDL 87          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P1_STAES (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 7.513e-21
Identity = 39/89 (43.82%), Postives = 50/89 (56.18%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGL 468
            +KVAINGFGRIGR   R    +    LEVVA+ND       +HLLKYD+  G F  +V+ +   G  V+GK I+     +   LPWG L
Sbjct:    3 IKVAINGFGRIGRLAFR--RIQDVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVI-EGGFRVNGKEIKSFDEPDAGKLPWGDL 88          

HSP 2 Score: 59.6918 bits (143), Expect = 7.513e-21
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 2
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQG 733
            P GDL ID+V+E TG + ++E A  HI AGAKKVLI+AP KG     T+V     + L    T  S     TTN LAP  +   +  FG+++G
Sbjct:   84 PWGDLDIDVVLECTGFYTDKEKAQAHIDAGAKKVLISAPAKG--DVKTIVFNTNHDTLDGSETVVSGASC-TTNSLAPVAK-VLSDEFGLVEG 172          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P1_STAEQ (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 7.513e-21
Identity = 39/89 (43.82%), Postives = 50/89 (56.18%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGL 468
            +KVAINGFGRIGR   R    +    LEVVA+ND       +HLLKYD+  G F  +V+ +   G  V+GK I+     +   LPWG L
Sbjct:    3 IKVAINGFGRIGRLAFR--RIQDVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVI-EGGFRVNGKEIKSFDEPDAGKLPWGDL 88          

HSP 2 Score: 59.6918 bits (143), Expect = 7.513e-21
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 2
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQG 733
            P GDL ID+V+E TG + ++E A  HI AGAKKVLI+AP KG     T+V     + L    T  S     TTN LAP  +   +  FG+++G
Sbjct:   84 PWGDLDIDVVLECTGFYTDKEKAQAHIDAGAKKVLISAPAKG--DVKTIVFNTNHDTLDGSETVVSGASC-TTNSLAPVAK-VLSDEFGLVEG 172          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_BUCAP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gapA PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.515e-21
Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGL 468
            +K+ INGFGRIGR   R    R++  +EVVAIND    K  +++LKYDST G F+ D++ V  + + ++GK I++ S ++P  L W  L
Sbjct:    3 IKIGINGFGRIGRVLFRLAQEREN--IEVVAINDLLDPKYIAYMLKYDSTHGNFKKDIE-VKNNNLIINGKKIRITSIKDPEKLMWDKL 88          

HSP 2 Score: 53.9138 bits (128), Expect = 7.515e-21
Identity = 40/95 (42.11%), Postives = 51/95 (53.68%), Query Frame = 2
Query:  473 IDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPS 757
            ID+VIE TG+F+ ++ A KHI +GAKKV+IT P K     P  V G   +  +     S+     TTNCLAP L       FGII+G     H S
Sbjct:   90 IDVVIESTGLFLTKDTAYKHILSGAKKVVITGPSK--DDIPMFVRGANFDKYKGEKIVSNASC--TTNCLAP-LSKVIDDHFGIIEGLMTTVHAS 179          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P_LACLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Lactococcus lactis subsp. lactis GN=gap PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.271e-20
Identity = 40/90 (44.44%), Postives = 54/90 (60.00%), Query Frame = 1
Query:  202 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLG 471
            +KV INGFGRIGR  LR    ++   +EV  IND       +HLLKYD+T G F+  V+ V  DG  V+GK ++V + RNP ++ W   G
Sbjct:    3 VKVGINGFGRIGRLALR--RIQEVEGVEVAHINDLTDPAMLAHLLKYDTTQGRFKGTVE-VKEDGFDVNGKFVKVTAERNPEDIQWADSG 89          

HSP 2 Score: 51.9878 bits (123), Expect = 1.271e-20
Identity = 45/108 (41.67%), Postives = 57/108 (52.78%), Query Frame = 2
Query:  464 DLGIDLVIEGTGVFVEREGAGKHIQ-AGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPSYTWGNQRLL 784
            D G+++V+E TG F  +E A KH+   GAKKVLITAP  G +   TVV       L    T  S     TTN LAP +  +  K+FG+  G     H SYT G+Q  L
Sbjct:   87 DSGVEIVLEATGFFATKEKAEKHLHPGGAKKVLITAP--GGNDVKTVVFNTNHTILDGTETVISAGSC-TTNSLAP-MADALNKNFGVKGGTMTTVH-SYT-GDQMTL 188          
The following BLAST results are available for this feature:
BLAST of EY665449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
G3P2_RHOSH5.066e-2350.56Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhod... [more]
G3P_BUCBP1.116e-2240.45Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P1_YEAST5.413e-2245.56Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3P2_BACSU7.039e-2242.53Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Baci... [more]
G3P_CORGL9.162e-2250.00Glyceraldehyde-3-phosphate dehydrogenase OS=Coryne... [more]
G3P_CHLMU4.440e-2142.27Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P1_STAES7.513e-2143.82Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAEQ7.513e-2143.82Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P_BUCAP7.515e-2142.70Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P_LACLA1.271e-2044.44Glyceraldehyde-3-phosphate dehydrogenase OS=Lactoc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665449 ID=EY665449; Name=EY665449; organism=Citrus sinensis; type=EST; length=850bp
GCTTCGGCCACTCTCTCTGTATCCAAATCAGCTCTTCAGGGAAATGGTAA
GGGATTCTCACAATTCTCAGGTCTACGCAACTCTGCAAGCCTTCCTTTTG
GCAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCT
GCTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAA
GCTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGA
GGTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAAT
GACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCAC
CCTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCT
CTGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAAT
CTCCCCTGGGGGGGACTTGGGCATCGACCTTGTGATTGAAGGGACAGGAG
TGTTTGTAGAAAGAGAGGGTGCGGGCAAGCACATTCAGGCTGGTGCCAAG
AAAGTACTTATTACAGCCCCCCGGAAAGGGTGACATCCCAACCCTACCGT
TGTTGGGGGTCCAATGCGGAATGCTTTACAAGCCAGATGAACCCCATCAT
CAGAAATGCTTCTTGGCACAACCAACTGCCTTGCCCCCTTTCTTCAAGGG
TCTTGGACCAAAAGCTTTGGCATTATTCAGGGAAACCCTGACCACCCACA
CCCCTCCTACACTTGGGGGAACCAAAGGTTACTCCCAAGCTAACCCACCG
GGAACCTAGGGGGAAAAAAAAAAAGCTGCAATCCAAATGTGCCCCAAAAT
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