EY665448

Overview
NameEY665448
Unique NameEY665448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665448_ssr324 microsatellite EY665448_ssr324:324..333. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665448 vs. ExPASy Swiss-Prot
Match: PSBP_SINAL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba GN=PSBP PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 6.144e-24
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 1
Query:  118 EDDGSAVSRRLVLTVLIGAAADGSKVSPADAAYGESPNVFGKPKTNTDFLPYNGDGFKLAIPSQWNPIKEREIP 339
            E+D S VSRRL LT+L+GAAA GSKVSPADAAYGE+ NVFGKPK NTDF  Y+GDGF++ +P++WNP +E E P
Sbjct:   44 EEDNSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKKNTDFTAYSGDGFQVQVPAKWNPSREVEYP 117          
BLAST of EY665448 vs. ExPASy Swiss-Prot
Match: PSBP_FRIAG (Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.024e-24
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 1
Query:  118 EDDGSAVSRRLVLTVLIGAAADGSKVSPADAAYGESPNVFGKPKTNTDFLPYNGDGFKLAIPSQWNPIKEREIP 339
            E+  +AVSRRL LT+LIG+AA G+K++PA+AAYGE+ NVFGK KTNTDFLPY GDGF L IP++WNP KE E P
Sbjct:   48 ENSSTAVSRRLALTILIGSAAVGTKIAPANAAYGEAANVFGKAKTNTDFLPYTGDGFNLLIPAKWNPSKEVEFP 121          
BLAST of EY665448 vs. ExPASy Swiss-Prot
Match: PSBP_NARPS (Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus pseudonarcissus GN=PSBP PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.809e-22
Identity = 50/73 (68.49%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  121 DDGSAVSRRLVLTVLIGAAADGSKVSPADAAYGESPNVFGKPKTNTDFLPYNGDGFKLAIPSQWNPIKEREIP 339
            ++ + +SRRL LT+LIG AA GS+VS ADAAYGES NVFGKPKTNTDF    GDGFK+ IPS+WNP KE E P
Sbjct:   50 ENDALLSRRLALTILIGGAALGSRVSAADAAYGESANVFGKPKTNTDFQTVTGDGFKILIPSKWNPSKEVEFP 122          
BLAST of EY665448 vs. ExPASy Swiss-Prot
Match: PSBP_WHEAT (Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum aestivum GN=PSBP PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.556e-19
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  121 DDGSAVSRRLVLTVLIGAAADGSKVSPADAAYGESPNVFGKPKTNTDFLPYNGDGFKLAIPSQWNPIKEREIP 339
            D     SRR  L++L GAAA   KVSPA AAYGE+ NVFGK K NTDF+ Y+G+GFKL IP++WNP KERE P
Sbjct:   44 DAAVVTSRRAALSLLAGAAAIAVKVSPAAAAYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKEREFP 116          
BLAST of EY665448 vs. ExPASy Swiss-Prot
Match: PSBP_CHLRE (Oxygen-evolving enhancer protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBP PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.528e-14
Identity = 40/71 (56.34%), Postives = 48/71 (67.61%), Query Frame = 1
Query:  127 GSAVSRRLVLTVLIGAAADGSKVSPADAAYGESPNVFGKPKTNTDFLPYNGDGFKLAIPSQWNPIKEREIP 339
            GS VSRR  L    GAAA  S  SPA+AAYG+S NVFGK    + F+PY GDGF L +P++WNP KE + P
Sbjct:   31 GSDVSRRAALAGFAGAAALVSS-SPANAAYGDSANVFGKVTNKSGFVPYAGDGFALLLPAKWNPSKENDFP 100          
The following BLAST results are available for this feature:
BLAST of EY665448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PSBP_SINAL6.144e-2468.92Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_FRIAG8.024e-2468.92Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_NARPS9.809e-2268.49Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_WHEAT4.556e-1963.01Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_CHLRE7.528e-1456.34Oxygen-evolving enhancer protein 2, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665448 ID=EY665448; Name=EY665448; organism=Citrus sinensis; type=EST; length=927bp
GCTTCGCTCCTCTCTGCACTCTCTACTACTTCATAAAAAAGAGCATCATC
NNANNGNNAGGGGNCGAANAANAAGAAAAAGAAGAAAGGGGGGGGGGGGN
AGATCCCCTATGAACAAGAAGATGACGGCAGCGCCGTCTCCCGCCGCTTG
GTTCTGACGGTGCTCATTGGTGCTGCTGCCGACGGCTCCAAGGTCTCTCC
TGCCGACGCTGCCTACGGCGAATCACCCAATGTGTTTGGTAAGCCAAAGA
CCAACACTGACTTCTTGCCATACAATGGAGATGGATTCAAACTAGCGATT
CCCTCACAATGGAACCCCATCAAAGAGAGAGAGATCCCCCGGTCGAGGTC
TTCAGATACCCAAGACAACTTGCATTGCAACGCGCACATGTTCCCGCCCT
AATCACCCCCCTACTGACAACAAAACTCACTCGCTGACCAAACGCACCCC
CCGACGAAATCCCTCAGTAATAGGGGAACGACTAGCCTGGGAAAAACAAC
GCCCATTCCTCGCAAAAATCTTACTCCCTCAGGGAGGGACTACCAAACCC
GACGGCCTGGGCCACCCCCCCTACCCATCCTTGAAGGAGCTTCAAGGACC
AACCCCACACCAACTAACTTTCTTTGTCCGGCAATCATCCAACCACATTG
CGCCGATCGCGAAACCCAAGAGGGGGCAACACATAACACCCTAAACATTC
GCACGCCCGCCTATACAACCGCAGCCCGCACCCCTCTTCTCACCTCTCAT
CGCCCACCAACCCCACGACGAACAAACATAGGGTGACCCTTCACGGCAAA
CAACACACATATCCAGACTCCCACACCCCCCCCCGCCCACCAATATCTCT
CTCCCAGTCGCCGCCTCCCCACCTACACCTCTCAACACACAAAACCTATG
CCTCTACCTAAAAAAGCAACGTGGAAC
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