CX043688

Overview
NameCX043688
Unique NameCX043688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: ERF36_ARATH (Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.527e-12
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = -3
Query:  219 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHL 398
            YRGVR R WGK+ +EIR P+K   R+WLGT+ T + AA A+D AA  ++GS A LNFP L
Sbjct:   79 YRGVRMRSWGKWVSEIRQPRKK-TRIWLGTFVTADMAARAHDVAALTIKGSSAVLNFPEL 137          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: ERF26_ARATH (Ethylene-responsive transcription factor ERF026 OS=Arabidopsis thaliana GN=ERF026 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.527e-12
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = -3
Query:  210 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGS 398
            YRG+R R  GK+ +EIR+PKK   RVWLGTY TPE AA AYD AA  ++G    LNFP  +GS
Sbjct:   90 YRGIRCRS-GKWVSEIREPKKT-TRVWLGTYPTPEMAAAAYDVAALALKGGDTLLNFPDSLGS 150          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: ERF24_ARATH (Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana GN=ERF024 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.527e-12
Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = -3
Query:  198 YRGVRRRP-WGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEP 398
            YRGVR+R    K+ +EIR+P+K   R+WLGT+ TPE AA AYD AA  ++GS+A+LNFP+ + S   P
Sbjct:   15 YRGVRQRKNSNKWVSEIREPRKPN-RIWLGTFSTPEMAAIAYDVAALALKGSQAELNFPNSVSSLPAP 81          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = -3
Query:  207 QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSN 401
            ++RGVR+R WG + +EIR P     RVWLGT+DT E AA AYD+AA  M G  AK NFP +I SN
Sbjct:    6 KFRGVRQRQWGSWVSEIRHPLLK-RRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFP-VIKSN 68          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: DRE2C_ARATH (Dehydration-responsive element-binding protein 2C OS=Arabidopsis thaliana GN=DREB2C PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = -3
Query:  219 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHL 398
            YRGVR+R WGK+ AEIR+P   GAR+WLGT+ +   AA AYD AA  + G  A+LN P +
Sbjct:   72 YRGVRQRRWGKWVAEIREPD-GGARLWLGTFSSSYEAALAYDEAAKAIYGQSARLNLPEI 130          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: SHN2_ARATH (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana GN=SHN2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = -3
Query:  225 QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFP 401
            ++RGVR+R WG + +EIR P     RVWLGT++T E AA AYD+AA  M G  AK NFP
Sbjct:    6 KFRGVRQRQWGSWVSEIRHPLLK-RRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFP 63          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: ERF69_ARATH (Ethylene-responsive transcription factor ERF069 OS=Arabidopsis thaliana GN=ERF069 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = -3
Query:  228 RMQYRGVRRRPWGKFAAEIRDPKKNGA--RVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNF 407
            + ++RGVR+RPWGK+AAEIR  +  G   R+WLGT++T E AA AYD AA ++ G  A  NF
Sbjct:   72 KKKFRGVRQRPWGKWAAEIRCGRVKGRPERIWLGTFETAEEAALAYDNAAIQLIGPDAPTNF 133          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: DRE2E_ARATH (Dehydration-responsive element-binding protein 2E OS=Arabidopsis thaliana GN=DREB2E PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = -3
Query:  213 QYRGVRRRPWGKFAAEIRDP-------KKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIG 401
            ++RGVR+R WGK+ AEIR+P            R+WLGT+ T   AA AYDRAA  M G  A+LNFP  +G
Sbjct:   69 RFRGVRQRVWGKWVAEIREPVSHRGANSSRSKRLWLGTFATAAEAALAYDRAASVMYGPYARLNFPEDLG 138          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: ERF13_ARATH (Ethylene-responsive transcription factor ERF013 OS=Arabidopsis thaliana GN=ERF013 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.620e-11
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = -3
Query:  219 QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHL 401
            +Y+GVR R WG +  EIR P +   R+WLG+Y T E AA AYD A   ++G KA LNFP++
Sbjct:   42 KYKGVRMRSWGSWVTEIRAPNQK-TRIWLGSYSTAEAAARAYDAALLCLKGPKANLNFPNI 101          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = -3
Query:  225 QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFP 401
            ++RGVR+R WG + AEIR P     R+WLGT++T E AA AYD AA  M G  AK NFP
Sbjct:    6 KFRGVRQRHWGSWVAEIRHPLLK-RRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFP 63          
The following BLAST results are available for this feature:
BLAST of CX043688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
ERF36_ARATH9.527e-1256.67Ethylene-responsive transcription factor ERF036 OS... [more]
ERF26_ARATH9.527e-1258.73Ethylene-responsive transcription factor ERF026 OS... [more]
ERF24_ARATH9.527e-1252.94Ethylene-responsive transcription factor ERF024 OS... [more]
SHN3_ARATH1.244e-1156.92Ethylene-responsive transcription factor SHINE 3 O... [more]
DRE2C_ARATH1.625e-1155.00Dehydration-responsive element-binding protein 2C ... [more]
SHN2_ARATH2.122e-1155.93Ethylene-responsive transcription factor SHINE 2 O... [more]
ERF69_ARATH2.122e-1153.23Ethylene-responsive transcription factor ERF069 OS... [more]
DRE2E_ARATH2.772e-1150.00Dehydration-responsive element-binding protein 2E ... [more]
ERF13_ARATH3.620e-1150.82Ethylene-responsive transcription factor ERF013 OS... [more]
WIN1_ARATH8.065e-1155.93Ethylene-responsive transcription factor WIN1 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12G10_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12G10-M20-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043688 ID=CX043688; Name=CX043688; organism=Citrus sinensis; type=EST; length=598bp
GATTTGAAAAGAAATTATTAAGAAGAAGTACGATTACATGTTATGTAAAT
TTGAATCTAAGAAAATTAAGCAAAGCAGCTCTGATACTAATAATTAATTC
ACCCGGGTCTAAAGGACACAACGGATGATGATGAAGAAAGAGACGAAGAA
GAGGAAGGAGGCTCTGGAGACCCACGCTTCTTGGTAACCCTAACCGGGGG
CTCAACATTTGAGCCAATGAGGTGAGGAAAATTGAGCTTAGCCTTGGAGC
CTCGCATCTTGAAAGCGGCTCTATCATAAGCAAATGCTGCACCCTCAGGG
GTATCATAGGTGCCCAGCCAAACTCTTGCCCCATTCTTCTTAGGGTCCCT
TATCTCCGCAGCAAACTTCCCCCACGGCCTCCTCCTCACGCCTCTATACT
GCATCCTCACGTGAGTCCCACGTGCCACATCCATCTGTGGAGTTGGAAGA
GGAGGAGGATGAGGAGGAGAAGTCATACTCGTATCAATATTTGCTATTGC
ACTTCCNATATCATTATTACGACCAAGCTGATCATCAAACGAAATCCACC
CTCCGTTGACGCCGTCATGTAAGGAGGAGTGCGAGCTAGAGCTAACCC
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