CX043688

Overview
NameCX043688
Unique NameCX043688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.341e-18
Identity = 47/70 (67.14%), Postives = 54/70 (77.14%), Query Frame = -3
Query:  192 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHL-IGSNVEPPV 398
            YRGVR+RPWGKFAAEIRDPK+   RVWLGT++T E AA AYDRAA   RG +AKLNFP +   S+V  PV
Sbjct:  136 YRGVRQRPWGKFAAEIRDPKR-ATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSVSSPV 204          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.993e-18
Identity = 43/60 (71.67%), Postives = 51/60 (85.00%), Query Frame = -3
Query:  219 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHL 398
            YRG+R+RPWGK+AAEIRDP+K G RVWLGT++T E AA AYD AA ++RG KAKLNFP L
Sbjct:   79 YRGIRKRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDL 137          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.215e-18
Identity = 42/59 (71.19%), Postives = 52/59 (88.14%), Query Frame = -3
Query:  225 QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFP 401
            QYRG+R+RPWGK+AAEIRDP+K G+R WLGT+DT E AA AYD AA ++RG+KAK+NFP
Sbjct:  127 QYRGIRQRPWGKWAAEIRDPRK-GSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFP 184          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.215e-18
Identity = 42/59 (71.19%), Postives = 52/59 (88.14%), Query Frame = -3
Query:  225 QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFP 401
            QYRG+R+RPWGK+AAEIRDP++ GAR+WLGT+ T E AA AYD AA ++RGSKAK+NFP
Sbjct:  124 QYRGIRQRPWGKWAAEIRDPRE-GARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFP 181          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.896e-18
Identity = 41/60 (68.33%), Postives = 51/60 (85.00%), Query Frame = -3
Query:  225 MQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFP 404
            ++YRGVR+RPWG++AAEIRDP K  +RVWLGT+DTPE AA AYD+ A + RG+KAK NFP
Sbjct:   18 VRYRGVRKRPWGRYAAEIRDPFKK-SRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.162e-17
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = -3
Query:  180 RMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEPPVRVTK 407
            R ++RGVR+RPWG++AAEIRDP + G RVWLGTYDTPE AA  YD+AA K++G  A  NFP  + +  E  V VT+
Sbjct:   95 RKKFRGVRQRPWGRWAAEIRDPTR-GKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFP--VSTTAEVTVTVTE 167          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: ERF61_ARATH (Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.162e-17
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = -3
Query:  219 RGTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHL 422
            R T  +  YRGVR+R WGK+ AEIR P+ N  RVWLGTYDT E AA+AYDRAA+K+RG  A+LNFP+L
Sbjct:  128 RVTKKKKLYRGVRQRHWGKWVAEIRLPQ-NRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNL 194          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.588e-17
Identity = 46/75 (61.33%), Postives = 56/75 (74.67%), Query Frame = -3
Query:  195 GTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPHLIGSNVEPP 419
            G+   +++RGVR+RPWG+FAAEIRDP K  ARVWLGT+D+ E AA AYD AA  +RG KAK NFP  I S+  PP
Sbjct:   21 GSVKEIRFRGVRKRPWGRFAAEIRDPWKK-ARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFP--IDSSSPPP 92          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.588e-17
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = -3
Query:  222 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFPH 398
            YRG+R+RPWGK+AAEIRDP K G RVWLGT+ T + AA AYD AA K+RG KAKLNFP+
Sbjct:   50 YRGIRQRPWGKWAAEIRDPSK-GVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPN 107          
BLAST of CX043688 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.415e-17
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = -3
Query:  225 MQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGSKAKLNFP 404
            + YRGVR+RPWG++AAEIRDP K   RVWLGT+DTPE AA AYD AA  +RG KAK NFP
Sbjct:   10 VHYRGVRKRPWGRYAAEIRDPWKK-TRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFP 68          
The following BLAST results are available for this feature:
BLAST of CX043688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
EF109_ARATH2.341e-1867.14Ethylene-responsive transcription factor ERF109 OS... [more]
RAP23_ARATH3.993e-1871.67Ethylene-responsive transcription factor RAP2-3 OS... [more]
RAP22_ARATH5.215e-1871.19Ethylene-responsive transcription factor RAP2-2 OS... [more]
RA212_ARATH5.215e-1871.19Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF76_ARATH8.896e-1868.33Ethylene-responsive transcription factor 11 OS=Ara... [more]
PTI6_SOLLC1.162e-1757.89Pathogenesis-related genes transcriptional activat... [more]
ERF61_ARATH1.162e-1764.71Ethylene-responsive transcription factor ERF061 OS... [more]
ERF82_ARATH2.588e-1761.33Ethylene-responsive transcription factor 3 OS=Arab... [more]
ERF71_ARATH2.588e-1771.19Ethylene-responsive transcription factor ERF071 OS... [more]
ERF81_ARATH4.415e-1770.00Ethylene-responsive transcription factor 12 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12G10_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12G10-M20-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043688 ID=CX043688; Name=CX043688; organism=Citrus sinensis; type=EST; length=598bp
GATTTGAAAAGAAATTATTAAGAAGAAGTACGATTACATGTTATGTAAAT
TTGAATCTAAGAAAATTAAGCAAAGCAGCTCTGATACTAATAATTAATTC
ACCCGGGTCTAAAGGACACAACGGATGATGATGAAGAAAGAGACGAAGAA
GAGGAAGGAGGCTCTGGAGACCCACGCTTCTTGGTAACCCTAACCGGGGG
CTCAACATTTGAGCCAATGAGGTGAGGAAAATTGAGCTTAGCCTTGGAGC
CTCGCATCTTGAAAGCGGCTCTATCATAAGCAAATGCTGCACCCTCAGGG
GTATCATAGGTGCCCAGCCAAACTCTTGCCCCATTCTTCTTAGGGTCCCT
TATCTCCGCAGCAAACTTCCCCCACGGCCTCCTCCTCACGCCTCTATACT
GCATCCTCACGTGAGTCCCACGTGCCACATCCATCTGTGGAGTTGGAAGA
GGAGGAGGATGAGGAGGAGAAGTCATACTCGTATCAATATTTGCTATTGC
ACTTCCNATATCATTATTACGACCAAGCTGATCATCAAACGAAATCCACC
CTCCGTTGACGCCGTCATGTAAGGAGGAGTGCGAGCTAGAGCTAACCC
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