CX043687

Overview
NameCX043687
Unique NameCX043687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043687 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.984e-11
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1
Query:  421 RMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFA 549
            +  YRGVR+RPWGKFAAEIRDP + G RVWLGT+DT   AA A
Sbjct:  142 KKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKA 184          
BLAST of CX043687 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.984e-11
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1
Query:  421 RMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFA 549
            +  YRGVR+RPWGKFAAEIRDP + G RVWLGT+DT   AA A
Sbjct:  135 KKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKA 177          
BLAST of CX043687 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.203e-11
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1
Query:  421 RMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFA 549
            R  YRGVR+RPWGK+AAEIRDPKK  ARVWLGT++T E AA A
Sbjct:   36 RRHYRGVRQRPWGKWAAEIRDPKK-AARVWLGTFETAEEAALA 77          
BLAST of CX043687 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.203e-11
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1
Query:  430 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFA 549
            YRGVRRRPWGKFAAEIRDP K G+R+WLGT+++   AA A
Sbjct:  110 YRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARA 149          
BLAST of CX043687 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.795e-11
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1
Query:  430 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFA 549
            YRGVRRRPWGKFAAEIRDP K G+R+WLGT+++   AA A
Sbjct:  107 YRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARA 146          
BLAST of CX043687 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.875e-11
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 1
Query:  421 RMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAA 543
            R ++RGVR+RPWG++AAEIRDP + G RVWLGTYDTPE AA
Sbjct:   95 RKKFRGVRQRPWGRWAAEIRDPTR-GKRVWLGTYDTPEEAA 134          
The following BLAST results are available for this feature:
BLAST of CX043687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
ERF5_TOBAC3.984e-1169.77Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF5_NICSY3.984e-1169.77Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF113_ARATH5.203e-1174.42Ethylene-responsive transcription factor ERF113 OS... [more]
EF106_ARATH5.203e-1172.50Ethylene-responsive transcription factor ERF106 OS... [more]
EF107_ARATH6.795e-1172.50Ethylene-responsive transcription factor ERF107 OS... [more]
PTI6_SOLLC8.875e-1173.17Pathogenesis-related genes transcriptional activat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12G10_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12G10-M20-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043687 ID=CX043687; Name=CX043687; organism=Citrus sinensis; type=EST; length=551bp
TTGTAGTAAAACAAAAAGGGGAAAAAAATGAACAGAGAAAATATGTCCGA
GTCAGATTTGGCTCTCCTGGAGTCAATTCGCCAACAACTTCTGGAGGATG
ACTTTGAAATTTTCACGACGTTTCCTTCAGAAACATTACCAATCAACAAT
AATGAAACATTAAATTCCCCTGTTTCGAGCTTCAATAGTTTCTCCTTCAC
AGAGAATATCAATGAGTATCTATCACAAGGGGTTAGCTCTAGCTCGCACT
CCTCCTTACATGACGGCGTCAATGGAGGGTGGATTTCGTTTGATGATCAG
CTTGGTCGTAATAATGATATTGGAAGTGCAATAGCAAATATTGATACGAG
TATGACTTCTCCTCCTCATCCTCCTCCTCTTCCAACTCCACAGATGGATG
TGGCACGTGGGACTCACGTGAGGATGCAGTATAGAGGCGTGAGGAGGAGG
CCGTGGGGGAAGTTTGCTGCGGAGATAAGGGACCCTAAGAAGAATGGGGC
AAGAGTTTGGCTGGGCACCTATGATACCCCTGAGGGTGCAGCATTTGCTT
A
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