EY665438

Overview
NameEY665438
Unique NameEY665438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665438_ssr479 microsatellite EY665438_ssr479:479..494. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.842e-23
Identity = 65/145 (44.83%), Postives = 79/145 (54.48%), Query Frame = 3
Query:   45 ISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            ISS+ +AT NR +  QAS+ APFTGLKS+ AFP TKK NND +S+ SNGGRVQCMK                                        VWPP GLKK+ETLSYLPPLSDE+ ++ +   LI    IP  +FE+   F
Sbjct:    4 ISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMK----------------------------------------VWPPIGLKKYETLSYLPPLSDEALSK-EIDYLIRNKWIPCLEFELEHGF 107          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.842e-23
Identity = 63/126 (50.00%), Postives = 77/126 (61.11%), Query Frame = 3
Query:   30 MASSMISSATVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDES 401
            MASSM+S+A VAT  A+R++ AQASMVAPFTGLKS SAFP T+K++ND++++ SNGG+VQCM                                        QVWPP G KKFETLSYLPPLS+ES
Sbjct:    1 MASSMLSNAAVATTAASRSAGAQASMVAPFTGLKSVSAFPVTRKSSNDLSTVPSNGGKVQCM----------------------------------------QVWPPLGKKKFETLSYLPPLSEES 86          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 8.260e-23
Identity = 72/150 (48.00%), Postives = 80/150 (53.33%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            MASSM+SSA V T    S AQA+MVAPFTGLKSS+AFP T+KTN DITSIASNGGRV CMK                                        VWPP G KKFETLSYLP LSD   A+     L+    IP  +FE+   F
Sbjct:    1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMK----------------------------------------VWPPIGKKKFETLSYLPDLSDVELAKEVDY-LLRNKWIPCVEFELEHGF 105          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.409e-22
Identity = 71/150 (47.33%), Postives = 80/150 (53.33%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            MASSM+SSAT+     AS AQA+MVAPF GLKSS+AFPAT+K NNDITSI SNGGRV CM                                        QVWPP G KKFETLSYLP L+D   A+     LI    IP  +FE+   F
Sbjct:    1 MASSMLSSATMV----ASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCM----------------------------------------QVWPPIGKKKFETLSYLPDLTDSELAKEVDY-LIRNKWIPCVEFELEHGF 105          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.403e-22
Identity = 71/150 (47.33%), Postives = 79/150 (52.67%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            MASSM+SSA V T    S  QA+MVAPFTGLKSS+AFP T+KTN DITSIASNGGRV CMK                                        VWPP G KKFETLSYLP LSD   A+     L+    IP  +FE+   F
Sbjct:    1 MASSMLSSAAVVT----SQLQATMVAPFTGLKSSAAFPVTRKTNTDITSIASNGGRVSCMK----------------------------------------VWPPIGKKKFETLSYLPDLSDVELAKEVDY-LLRNKWIPCVEFELEHGF 105          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.403e-22
Identity = 68/151 (45.03%), Postives = 84/151 (55.63%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            MASS++SSA VAT  R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM                                        QVWPP  +KK+ETLSYLP LSDE   +     L+    +P  +FE    F
Sbjct:    1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCM----------------------------------------QVWPPINMKKYETLSYLPDLSDEQLLKEVEY-LLKNGWVPCLEFETEHGF 108          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.403e-22
Identity = 69/150 (46.00%), Postives = 80/150 (53.33%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            MASS+ISSA VAT  R+++ QASMVAPFTGLKSS+ FP TKK N DITSIASNGGRV CM                                        QVWPP  +KK+ETLSYLP LSDE     +   L+    +P  +FE    F
Sbjct:    1 MASSVISSAAVAT--RSNVTQASMVAPFTGLKSSATFPVTKKQNLDITSIASNGGRVSCM----------------------------------------QVWPPINMKKYETLSYLPDLSDEQLL-SEIEYLLKNGWVPCLEFETEHGF 107          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.403e-22
Identity = 68/151 (45.03%), Postives = 84/151 (55.63%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            MASS++SSA VAT  R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM                                        QVWPP  +KK+ETLSYLP LSDE   +     L+    +P  +FE    F
Sbjct:    1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCM----------------------------------------QVWPPINMKKYETLSYLPDLSDEQLLKEVEY-LLKNGWVPCLEFETEHGF 108          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.139e-22
Identity = 62/124 (50.00%), Postives = 71/124 (57.26%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDES 401
            MASS++S+A    A   + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM                                        QVWPP G+KKFETLSYLPPLS+ES
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCM----------------------------------------QVWPPLGMKKFETLSYLPPLSEES 83          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.139e-22
Identity = 71/151 (47.02%), Postives = 81/151 (53.64%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSIT-LIPPAGIPGWKFEVGGAF 479
            MASSM+SSA V T    S AQA+MVAPFTGLKSS+AFP T+K NNDITSIASNGGRV CMK                                        VWPP G KKFETLSYLP L++     GK +  L+    IP  +FE+   F
Sbjct:    1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKANNDITSIASNGGRVSCMK----------------------------------------VWPPVGKKKFETLSYLPDLTEVEL--GKEVDYLLRNKWIPCVEFELEHGF 105          
The following BLAST results are available for this feature:
BLAST of EY665438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RBS_LACSA4.842e-2344.83Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_MESCR4.842e-2350.00Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS3B_ARATH8.260e-2348.00Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS1A_ARATH1.409e-2247.33Ribulose bisphosphate carboxylase small chain 1A, ... [more]
RBS_RAPSA2.403e-2247.33Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_SOLTU2.403e-2245.03Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2A_SOLLC2.403e-2246.00Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS0_SOLTU2.403e-2245.03Ribulose bisphosphate carboxylase small chain C, c... [more]
RBS4_MESCR3.139e-2250.00Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS2_BRANA3.139e-2247.02Ribulose bisphosphate carboxylase small chain F1, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-A09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665438 ID=EY665438; Name=EY665438; organism=Citrus sinensis; type=EST; length=885bp
TGCAAAGCTAGAAGAACGAGCAAGTACCAATGGCTTCCTCAATGATCTCA
TCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCAT
GGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCA
AGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTC
CAATGCATGAAGGTCATCATCATAATCATACAAGAATTCATTTCTTCTTT
TGCTTGTTTAAATTGACGGCTTTCTTCTTTTAGCTCTCAATTATGTTTTT
AATTAATTTTCTTGTGAGCTTGTATGTTACAGGTGTGGCCACCAACTGGC
TTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAAG
CTTTGCTCAAGGGAAATCAATTACCTTAATCCCTCCGGCTGGGATCCCTG
GTTGGAAATTCGAAGTTGGAGGGGCTTTTCTCTCTCTCTCTCTCTGGCTT
CTCTTAATAAATACTATTTATTTTGGAGGAAACCTAATCTTTGTGCTTTA
AGAAAAAAAATTACAACTTGTCCTGAATTCTATTGGGCACAAAAAAATCC
ATTTCAAAATCCAAAAACCTGGATTAAAACAATTGGTTTAATTTAAATAC
TAAAGCCTTTTGGGGTAAAAAACGGGAATTTTTACCAGGCAAAAGGGGGG
GGGGAATTTTTGTGTTTTTTTCTTTTTTTTTTTTTTTTTTTCTTTTGGGG
GGCGGGGGAACTGGCAAAAAGAAGGGGGGGGGAACCGGGGAACCCCCCCC
AATTTCCCCCCAGAATATTTTCACACAGGGGACCCTCTCGTGGTAAAATG
GGAAAAACACTCCCCCTCTTCGGGGGGGGGCCAAC
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