EY665438
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 4.842e-23 Identity = 65/145 (44.83%), Postives = 79/145 (54.48%), Query Frame = 3 Query: 45 ISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 ISS+ +AT NR + QAS+ APFTGLKS+ AFP TKK NND +S+ SNGGRVQCMK VWPP GLKK+ETLSYLPPLSDE+ ++ + LI IP +FE+ F Sbjct: 4 ISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMK----------------------------------------VWPPIGLKKYETLSYLPPLSDEALSK-EIDYLIRNKWIPCLEFELEHGF 107
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 4.842e-23 Identity = 63/126 (50.00%), Postives = 77/126 (61.11%), Query Frame = 3 Query: 30 MASSMISSATVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDES 401 MASSM+S+A VAT A+R++ AQASMVAPFTGLKS SAFP T+K++ND++++ SNGG+VQCM QVWPP G KKFETLSYLPPLS+ES Sbjct: 1 MASSMLSNAAVATTAASRSAGAQASMVAPFTGLKSVSAFPVTRKSSNDLSTVPSNGGKVQCM----------------------------------------QVWPPLGKKKFETLSYLPPLSEES 86
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2) HSP 1 Score: 107.842 bits (268), Expect = 8.260e-23 Identity = 72/150 (48.00%), Postives = 80/150 (53.33%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASSM+SSA V T S AQA+MVAPFTGLKSS+AFP T+KTN DITSIASNGGRV CMK VWPP G KKFETLSYLP LSD A+ L+ IP +FE+ F Sbjct: 1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMK----------------------------------------VWPPIGKKKFETLSYLPDLSDVELAKEVDY-LLRNKWIPCVEFELEHGF 105
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2) HSP 1 Score: 107.071 bits (266), Expect = 1.409e-22 Identity = 71/150 (47.33%), Postives = 80/150 (53.33%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASSM+SSAT+ AS AQA+MVAPF GLKSS+AFPAT+K NNDITSI SNGGRV CM QVWPP G KKFETLSYLP L+D A+ LI IP +FE+ F Sbjct: 1 MASSMLSSATMV----ASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCM----------------------------------------QVWPPIGKKKFETLSYLPDLTDSELAKEVDY-LIRNKWIPCVEFELEHGF 105
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 2.403e-22 Identity = 71/150 (47.33%), Postives = 79/150 (52.67%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASSM+SSA V T S QA+MVAPFTGLKSS+AFP T+KTN DITSIASNGGRV CMK VWPP G KKFETLSYLP LSD A+ L+ IP +FE+ F Sbjct: 1 MASSMLSSAAVVT----SQLQATMVAPFTGLKSSAAFPVTRKTNTDITSIASNGGRVSCMK----------------------------------------VWPPIGKKKFETLSYLPDLSDVELAKEVDY-LLRNKWIPCVEFELEHGF 105
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 2.403e-22 Identity = 68/151 (45.03%), Postives = 84/151 (55.63%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASS++SSA VAT R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM QVWPP +KK+ETLSYLP LSDE + L+ +P +FE F Sbjct: 1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCM----------------------------------------QVWPPINMKKYETLSYLPDLSDEQLLKEVEY-LLKNGWVPCLEFETEHGF 108
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 2.403e-22 Identity = 69/150 (46.00%), Postives = 80/150 (53.33%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASS+ISSA VAT R+++ QASMVAPFTGLKSS+ FP TKK N DITSIASNGGRV CM QVWPP +KK+ETLSYLP LSDE + L+ +P +FE F Sbjct: 1 MASSVISSAAVAT--RSNVTQASMVAPFTGLKSSATFPVTKKQNLDITSIASNGGRVSCM----------------------------------------QVWPPINMKKYETLSYLPDLSDEQLL-SEIEYLLKNGWVPCLEFETEHGF 107
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 2.403e-22 Identity = 68/151 (45.03%), Postives = 84/151 (55.63%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASS++SSA VAT R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM QVWPP +KK+ETLSYLP LSDE + L+ +P +FE F Sbjct: 1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCM----------------------------------------QVWPPINMKKYETLSYLPDLSDEQLLKEVEY-LLKNGWVPCLEFETEHGF 108
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 3.139e-22 Identity = 62/124 (50.00%), Postives = 71/124 (57.26%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDES 401 MASS++S+A A + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM QVWPP G+KKFETLSYLPPLS+ES Sbjct: 1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCM----------------------------------------QVWPPLGMKKFETLSYLPPLSEES 83
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 3.139e-22 Identity = 71/151 (47.02%), Postives = 81/151 (53.64%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSIT-LIPPAGIPGWKFEVGGAF 479 MASSM+SSA V T S AQA+MVAPFTGLKSS+AFP T+K NNDITSIASNGGRV CMK VWPP G KKFETLSYLP L++ GK + L+ IP +FE+ F Sbjct: 1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKANNDITSIASNGGRVSCMK----------------------------------------VWPPVGKKKFETLSYLPDLTEVEL--GKEVDYLLRNKWIPCVEFELEHGF 105 The following BLAST results are available for this feature:
BLAST of EY665438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >EY665438 ID=EY665438; Name=EY665438; organism=Citrus sinensis; type=EST; length=885bpback to top |