EY665438
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.010e-20 Identity = 66/150 (44.00%), Postives = 80/150 (53.33%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASS++SSA VAT R + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV CM QVWPP +KK+ETLSYLP LSDE + L+ +P +FE F Sbjct: 1 MASSVMSSAAVAT--RGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVSCM----------------------------------------QVWPPINMKKYETLSYLPDLSDEQLL-SEIEYLLKNGWVPCLEFETEHGF 107
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.010e-20 Identity = 65/150 (43.33%), Postives = 80/150 (53.33%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASS++SSA VAT R+++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM QVWPP KK+ETLSYLP LS E L+ +P +FE F Sbjct: 1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCM----------------------------------------QVWPPINKKKYETLSYLPDLSQEQLLSEVEY-LLKNGWVPCLEFETEHGF 107
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.722e-20 Identity = 60/127 (47.24%), Postives = 70/127 (55.12%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQ 410 MASSM++S A RA AQ+SMVAPF GL+SS AFPAT+K NND++++ SNGGRV CM QVWPP GLKKFETLSYLPPLS E A+ Sbjct: 1 MASSMMAST--AAVARAGPAQSSMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCM----------------------------------------QVWPPEGLKKFETLSYLPPLSVEDLAK 85
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.722e-20 Identity = 66/150 (44.00%), Postives = 81/150 (54.00%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASS++SSA VAT +R AQASMVAPFTGLKS+ FPATKK N+DITS+ASNGGRVQCMK VWP +K++ETLSYLPPL+ + A+ L+ +P +FE F Sbjct: 1 MASSVLSSAAVATVSRTP-AQASMVAPFTGLKSTVGFPATKK-NDDITSLASNGGRVQCMK----------------------------------------VWPTQNMKRYETLSYLPPLTTDQLARQVDY-LLNNKWVPCLEFETDHGF 107
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.249e-20 Identity = 69/150 (46.00%), Postives = 75/150 (50.00%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASSMISS V T NRA A VAPFTGLKS + FP T+KTNNDI SIASNGGRVQCM QVWP TG KKFETLSYLP L D A+ L+ IP +FE+ F Sbjct: 1 MASSMISSPAVTTVNRAG---AGTVAPFTGLKSMAGFP-TRKTNNDIASIASNGGRVQCM----------------------------------------QVWPTTGKKKFETLSYLPDLDDAQLAKEVEY-LLRKGWIPCLEFELEHGF 105
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.249e-20 Identity = 69/150 (46.00%), Postives = 75/150 (50.00%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASSMISS V T NRA A VAPFTGLKS + FP T+KTNNDI SIASNGGRVQCM QVWP TG KKFETLSYLP L D A+ L+ IP +FE+ F Sbjct: 1 MASSMISSPAVTTVNRAG---AGTVAPFTGLKSMAGFP-TRKTNNDIASIASNGGRVQCM----------------------------------------QVWPTTGKKKFETLSYLPDLDDAQLAKEVEY-LLRKGWIPCLEFELEHGF 105
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 8.548e-20 Identity = 62/124 (50.00%), Postives = 70/124 (56.45%), Query Frame = 3 Query: 30 MASSMISSATVATANRASL--AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSD 395 MASSM+S+A A A A+ AQA+MVAPF GLKS ++FP T+K +NDITSIASNGGRVQCM QVWPP G KKFETLSYLPPLSD Sbjct: 1 MASSMMSNAATAVAVAATSGGAQANMVAPFNGLKSIASFPVTRK-SNDITSIASNGGRVQCM----------------------------------------QVWPPVGKKKFETLSYLPPLSD 83
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.458e-19 Identity = 58/127 (45.67%), Postives = 68/127 (53.54%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQ 410 MASSM++S A R AQ +MVAPF GL+SS AFPAT+K NND++++ SNGGRV CM QVWPP GLKKFETLSYLPPLS E A+ Sbjct: 1 MASSMMAST--AAVARVGPAQTNMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCM----------------------------------------QVWPPEGLKKFETLSYLPPLSVEDLAK 85
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.458e-19 Identity = 61/122 (50.00%), Postives = 69/122 (56.56%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSD 395 MASS++S+A A AS AQA+MVAPF GLKS ++FP T+K +NDITSIASNGGRVQCM QVWPP G KKFETLSYLPPLSD Sbjct: 1 MASSLMSNAITAVVG-ASGAQANMVAPFNGLKSIASFPVTRK-SNDITSIASNGGRVQCM----------------------------------------QVWPPVGKKKFETLSYLPPLSD 80
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.458e-19 Identity = 64/151 (42.38%), Postives = 80/151 (52.98%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQA-SMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASS+ISSA VAT R ++ QA SM+APFTGLKS++ FP ++K N DITSIASNGGRV+CM QVWPP +KK+ETLSYLP L+DE + L+ +P +FE F Sbjct: 1 MASSVISSAAVAT--RTNVTQAGSMIAPFTGLKSAATFPVSRKQNLDITSIASNGGRVRCM----------------------------------------QVWPPINMKKYETLSYLPDLTDEQLLKEVEY-LLKNGWVPCLEFETEHGF 108 The following BLAST results are available for this feature:
BLAST of EY665438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >EY665438 ID=EY665438; Name=EY665438; organism=Citrus sinensis; type=EST; length=885bpback to top |