EY665438
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19 Identity = 63/147 (42.86%), Postives = 75/147 (51.02%), Query Frame = 3 Query: 39 SMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 ++ISSA V T NRA + QA++ PFTGLKSS+ FP TKK NNDITSI SNG RV CM QVWPP G KKFETLSYLPPL+DE + L+ +P +FE+ F Sbjct: 2 ALISSAAVTTINRAPV-QANLATPFTGLKSSAGFPVTKK-NNDITSITSNGSRVNCM----------------------------------------QVWPPVGKKKFETLSYLPPLTDEQLLKEVEY-LLRKGWVPCVEFELEKGF 105
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 4.242e-19 Identity = 59/143 (41.26%), Postives = 77/143 (53.85%), Query Frame = 3 Query: 51 SATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 S++VAT +R + AQA+MVAPFTGLKS++AFP TKK ND +++ SNGGRVQCMK VWPP GLKK+ETLSYLPPL++ A+ L+ +P +FE+ F Sbjct: 5 SSSVATVSRTAPAQANMVAPFTGLKSNAAFPTTKKA-NDFSTLPSNGGRVQCMK----------------------------------------VWPPLGLKKYETLSYLPPLTETQLAKEVDY-LLRKKWVPCLEFELEHGF 105
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 7.236e-19 Identity = 57/127 (44.88%), Postives = 70/127 (55.12%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQ 410 ++S M+SSA AT RAS AQ+SMVAPFTGLKS+SAFP T+K N D++ + SNGGRVQCMK VWP G+KKFETLSYLP + DE+ + Sbjct: 2 VSSMMVSSA--ATFTRASPAQSSMVAPFTGLKSASAFPVTRKPNADLSHLPSNGGRVQCMK----------------------------------------VWPIEGVKKFETLSYLPTMKDEALVK 86
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.234e-18 Identity = 62/150 (41.33%), Postives = 79/150 (52.67%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 MASS++S+ATVAT A+ AQASM+A F GLKS+++FP T+K + DITSIASNGGRV+CM VWPP KK+ETLSYLP LSDE + + L+ +P +FE F Sbjct: 1 MASSVMSTATVATG--ANAAQASMIASFNGLKSAASFPVTRKQDLDITSIASNGGRVECM----------------------------------------LVWPPINKKKYETLSYLPDLSDEQLLK-EIEYLLQKGWVPCLEFETEHGF 107
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.234e-18 Identity = 60/143 (41.96%), Postives = 77/143 (53.85%), Query Frame = 3 Query: 51 SATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 S+TVAT +RA+ AQA+MVAPFTGLKS++AFPATKK ND +++ SNGGRVQCMK VWPP G KK+ETLSYLP L++ A+ L+ +P +FE+ F Sbjct: 5 SSTVATVSRAAPAQANMVAPFTGLKSNAAFPATKKA-NDFSTLPSNGGRVQCMK----------------------------------------VWPPLGKKKYETLSYLPNLTEAQLAKEVDY-LLRNKWVPCLEFELEHGF 105
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.612e-18 Identity = 63/148 (42.57%), Postives = 77/148 (52.03%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGG 473 MASS ++VATA RA+ AQASMVAPF GLKS+SAFP T+K ++++ SNGGRVQCMK VWP GLKKFETLSYLP LS ES + + LI +P +F + G Sbjct: 1 MASSATMLSSVATAARAAPAQASMVAPFVGLKSASAFPVTQKPATGLSTLPSNGGRVQCMK----------------------------------------VWPIVGLKKFETLSYLPTLSVESLLK-QIEYLIRNGWVPCLEFSLEG 107
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.612e-18 Identity = 61/146 (41.78%), Postives = 74/146 (50.68%), Query Frame = 3 Query: 42 MISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 M S+A VAT A AQASM+APFTGLKS+++FP ++K N DITSIASNGGRVQCM QVWPP KK+ETLSYLP LS+E + L+ +P +FE F Sbjct: 6 MSSAAAVATGTNA--AQASMIAPFTGLKSATSFPVSRKQNLDITSIASNGGRVQCM----------------------------------------QVWPPINKKKYETLSYLPDLSEEQLLREVEY-LLKNGWVPCLEFETEHGF 108
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.612e-18 Identity = 56/127 (44.09%), Postives = 69/127 (54.33%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQ 410 MASSM++S A RA AQ++MVAPF GL+SS AFPAT+K N +++++ SNGG+V CM QVWPP GLKKFETLSYLPPLS E A+ Sbjct: 1 MASSMMAST--AAVARAGPAQSNMVAPFNGLRSSVAFPATRKANKNLSTLPSNGGKVSCM----------------------------------------QVWPPEGLKKFETLSYLPPLSVEDLAK 85
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.750e-18 Identity = 63/148 (42.57%), Postives = 77/148 (52.03%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGG 473 MASS ++VATA A+ AQASMVAPF GLKS+SAFP T+KT ++++ SNGGRVQCMK VWP GLKKFETLSYLP LS ES + + LI +P +F + G Sbjct: 1 MASSATMLSSVATAACAAPAQASMVAPFVGLKSASAFPVTQKTATGLSTLPSNGGRVQCMK----------------------------------------VWPIVGLKKFETLSYLPTLSVESLLK-QIEYLIRNGWVPCLEFSLEG 107
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.750e-18 Identity = 60/148 (40.54%), Postives = 74/148 (50.00%), Query Frame = 3 Query: 36 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 +SMISS+ V T +RAS Q++ VAPF GLKS + FP KK N DITSI SNGGRV+CM QVWPP G KKFETLSYLPPL+ + + L+ +P +FE+ F Sbjct: 2 ASMISSSAVTTVSRASTVQSAAVAPFGGLKSMTGFP-VKKVNTDITSITSNGGRVKCM----------------------------------------QVWPPIGKKKFETLSYLPPLTRDQLLKEVEY-LLRKGWVPCLEFELEKGF 107 The following BLAST results are available for this feature:
BLAST of EY665438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >EY665438 ID=EY665438; Name=EY665438; organism=Citrus sinensis; type=EST; length=885bpback to top |