EY665438
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.591e-18 Identity = 60/148 (40.54%), Postives = 74/148 (50.00%), Query Frame = 3 Query: 36 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 +SMISS+ V T +RAS Q++ VAPF GLKS + FP KK N DITSI SNGGRV+CM QVWPP G KKFETLSYLPPL+ + + L+ +P +FE+ F Sbjct: 2 ASMISSSAVTTVSRASRGQSAAVAPFGGLKSMTGFP-VKKVNTDITSITSNGGRVKCM----------------------------------------QVWPPIGKKKFETLSYLPPLTRDQLLKEVEY-LLRKGWVPCLEFELEKGF 107
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 6.126e-18 Identity = 59/143 (41.26%), Postives = 76/143 (53.15%), Query Frame = 3 Query: 51 SATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 S+TVAT +RA+ AQA+MVAPFTGLKS+ AFPATKK ND +++ SNGGRVQCMK VWPP G K++ETLSYLP L++ A+ L+ +P +FE+ F Sbjct: 5 SSTVATVSRAAPAQANMVAPFTGLKSNVAFPATKKA-NDFSTLPSNGGRVQCMK----------------------------------------VWPPLGKKRYETLSYLPNLTEAQLAKEVDY-LLRNKWVPCLEFELEHGF 105
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.045e-17 Identity = 62/148 (41.89%), Postives = 76/148 (51.35%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGG 473 MASS ++VATA + AQASMVAPF GLKS+SAFP T+KT ++++ SNGGRVQCMK VWP GLKKFETLSYLP LS ES + + LI +P +F + G Sbjct: 1 MASSATMLSSVATAACVAPAQASMVAPFVGLKSASAFPVTQKTVTGLSTLPSNGGRVQCMK----------------------------------------VWPIVGLKKFETLSYLPTLSVESLLK-QIEYLIRNGWVPCLEFSLEG 107
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 3.040e-17 Identity = 61/148 (41.22%), Postives = 76/148 (51.35%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGG 473 MA+S ++VATA A+ AQASMVAPF GLKS+SAFP T+K ++++ SNGGRVQCMK VWP GLKKFETLSYLP LS ES + + LI +P +F + G Sbjct: 1 MAASSTMLSSVATAACAAPAQASMVAPFVGLKSTSAFPVTQKPATGLSTLPSNGGRVQCMK----------------------------------------VWPIVGLKKFETLSYLPTLSVESLLK-QIEYLIRNGWVPCLEFSLEG 107
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 3.971e-17 Identity = 56/127 (44.09%), Postives = 66/127 (51.97%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQ 410 MASSM++S A A RA AQ +MV PF +SS FPAT+K NND++++ SNGGRV CM QVWPP GLKKFETLSYLPPLS E A+ Sbjct: 1 MASSMMASTAAAVA-RAGPAQTNMV-PFNACRSSVPFPATRKANNDLSTLPSNGGRVSCM----------------------------------------QVWPPEGLKKFETLSYLPPLSVEDLAK 85
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.509e-16 Identity = 55/127 (43.31%), Postives = 66/127 (51.97%), Query Frame = 3 Query: 30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQ 410 MASSM++S A A RA AQ+SMV PF +SS FPAT+K NN+++++ NGGRV CM QVWPP GLKKFETLSYLPPLS E A+ Sbjct: 1 MASSMMASTAAAVA-RAGPAQSSMV-PFNACRSSVPFPATRKANNNLSTLPGNGGRVSCM----------------------------------------QVWPPEGLKKFETLSYLPPLSVEDLAK 85
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 3.361e-16 Identity = 52/123 (42.28%), Postives = 63/123 (51.22%), Query Frame = 3 Query: 42 MISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQ 410 M+S+A VA R AQ +MV F G +SS AFPAT+K NND++++ S+GGRV CM QVWPP GLKKFETLSYLPPLS E A+ Sbjct: 2 MVSTAAVA---RVRPAQTNMVGAFNGCRSSVAFPATRKANNDLSTLPSSGGRVSCM----------------------------------------QVWPPEGLKKFETLSYLPPLSVEDLAK 81
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.668e-15 Identity = 54/137 (39.42%), Postives = 71/137 (51.82%), Query Frame = 3 Query: 69 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 A A++AQA+MVAPFTGLKS++AFP TKK ND +++ASNGGRVQCMK VWPP G K++ETLSYLP L++ A+ L+ +P +FE+ F Sbjct: 6 ATVATVAQANMVAPFTGLKSNAAFPVTKKV-NDFSTLASNGGRVQCMK----------------------------------------VWPPLGKKRYETLSYLPNLTEVQLAKEVDY-LLRNKWVPCLEFELEHGF 100
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.716e-15 Identity = 53/137 (38.69%), Postives = 70/137 (51.09%), Query Frame = 3 Query: 69 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 A A++AQA+MVAPFTGLKS++AFP TKK ND +++ SNGGRVQCMK VWPP G K++ETLSYLP L++ A+ L+ +P +FE+ F Sbjct: 6 ATVATVAQANMVAPFTGLKSNAAFPVTKKV-NDFSTLPSNGGRVQCMK----------------------------------------VWPPLGKKRYETLSYLPNLTESQLAKEVDY-LLRNKWVPCLEFELEHGF 100
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.854e-15 Identity = 53/137 (38.69%), Postives = 70/137 (51.09%), Query Frame = 3 Query: 69 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479 A A++AQA+MVAPFTGLK+++AFP TKK ND +++ SNGGRVQCMK VWPP G KK+ETLSYLP L++ A+ L+ +P +FE+ F Sbjct: 6 ATVATVAQANMVAPFTGLKANAAFPVTKKV-NDFSTLPSNGGRVQCMK----------------------------------------VWPPLGKKKYETLSYLPDLTEVQLAKEVDY-LLRNKWVPCLEFELEHGF 100 The following BLAST results are available for this feature:
BLAST of EY665438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >EY665438 ID=EY665438; Name=EY665438; organism=Citrus sinensis; type=EST; length=885bpback to top |