EY665438

Overview
NameEY665438
Unique NameEY665438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665438_ssr479 microsatellite EY665438_ssr479:479..494. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.591e-18
Identity = 60/148 (40.54%), Postives = 74/148 (50.00%), Query Frame = 3
Query:   36 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            +SMISS+ V T +RAS  Q++ VAPF GLKS + FP  KK N DITSI SNGGRV+CM                                        QVWPP G KKFETLSYLPPL+ +   +     L+    +P  +FE+   F
Sbjct:    2 ASMISSSAVTTVSRASRGQSAAVAPFGGLKSMTGFP-VKKVNTDITSITSNGGRVKCM----------------------------------------QVWPPIGKKKFETLSYLPPLTRDQLLKEVEY-LLRKGWVPCLEFELEKGF 107          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.126e-18
Identity = 59/143 (41.26%), Postives = 76/143 (53.15%), Query Frame = 3
Query:   51 SATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            S+TVAT +RA+ AQA+MVAPFTGLKS+ AFPATKK  ND +++ SNGGRVQCMK                                        VWPP G K++ETLSYLP L++   A+     L+    +P  +FE+   F
Sbjct:    5 SSTVATVSRAAPAQANMVAPFTGLKSNVAFPATKKA-NDFSTLPSNGGRVQCMK----------------------------------------VWPPLGKKRYETLSYLPNLTEAQLAKEVDY-LLRNKWVPCLEFELEHGF 105          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.045e-17
Identity = 62/148 (41.89%), Postives = 76/148 (51.35%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGG 473
            MASS    ++VATA   + AQASMVAPF GLKS+SAFP T+KT   ++++ SNGGRVQCMK                                        VWP  GLKKFETLSYLP LS ES  + +   LI    +P  +F + G
Sbjct:    1 MASSATMLSSVATAACVAPAQASMVAPFVGLKSASAFPVTQKTVTGLSTLPSNGGRVQCMK----------------------------------------VWPIVGLKKFETLSYLPTLSVESLLK-QIEYLIRNGWVPCLEFSLEG 107          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.040e-17
Identity = 61/148 (41.22%), Postives = 76/148 (51.35%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGG 473
            MA+S    ++VATA  A+ AQASMVAPF GLKS+SAFP T+K    ++++ SNGGRVQCMK                                        VWP  GLKKFETLSYLP LS ES  + +   LI    +P  +F + G
Sbjct:    1 MAASSTMLSSVATAACAAPAQASMVAPFVGLKSTSAFPVTQKPATGLSTLPSNGGRVQCMK----------------------------------------VWPIVGLKKFETLSYLPTLSVESLLK-QIEYLIRNGWVPCLEFSLEG 107          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.971e-17
Identity = 56/127 (44.09%), Postives = 66/127 (51.97%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQ 410
            MASSM++S   A A RA  AQ +MV PF   +SS  FPAT+K NND++++ SNGGRV CM                                        QVWPP GLKKFETLSYLPPLS E  A+
Sbjct:    1 MASSMMASTAAAVA-RAGPAQTNMV-PFNACRSSVPFPATRKANNDLSTLPSNGGRVSCM----------------------------------------QVWPPEGLKKFETLSYLPPLSVEDLAK 85          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.509e-16
Identity = 55/127 (43.31%), Postives = 66/127 (51.97%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQ 410
            MASSM++S   A A RA  AQ+SMV PF   +SS  FPAT+K NN+++++  NGGRV CM                                        QVWPP GLKKFETLSYLPPLS E  A+
Sbjct:    1 MASSMMASTAAAVA-RAGPAQSSMV-PFNACRSSVPFPATRKANNNLSTLPGNGGRVSCM----------------------------------------QVWPPEGLKKFETLSYLPPLSVEDLAK 85          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.361e-16
Identity = 52/123 (42.28%), Postives = 63/123 (51.22%), Query Frame = 3
Query:   42 MISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQ 410
            M+S+A VA   R   AQ +MV  F G +SS AFPAT+K NND++++ S+GGRV CM                                        QVWPP GLKKFETLSYLPPLS E  A+
Sbjct:    2 MVSTAAVA---RVRPAQTNMVGAFNGCRSSVAFPATRKANNDLSTLPSSGGRVSCM----------------------------------------QVWPPEGLKKFETLSYLPPLSVEDLAK 81          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.668e-15
Identity = 54/137 (39.42%), Postives = 71/137 (51.82%), Query Frame = 3
Query:   69 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            A  A++AQA+MVAPFTGLKS++AFP TKK  ND +++ASNGGRVQCMK                                        VWPP G K++ETLSYLP L++   A+     L+    +P  +FE+   F
Sbjct:    6 ATVATVAQANMVAPFTGLKSNAAFPVTKKV-NDFSTLASNGGRVQCMK----------------------------------------VWPPLGKKRYETLSYLPNLTEVQLAKEVDY-LLRNKWVPCLEFELEHGF 100          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.716e-15
Identity = 53/137 (38.69%), Postives = 70/137 (51.09%), Query Frame = 3
Query:   69 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            A  A++AQA+MVAPFTGLKS++AFP TKK  ND +++ SNGGRVQCMK                                        VWPP G K++ETLSYLP L++   A+     L+    +P  +FE+   F
Sbjct:    6 ATVATVAQANMVAPFTGLKSNAAFPVTKKV-NDFSTLPSNGGRVQCMK----------------------------------------VWPPLGKKRYETLSYLPNLTESQLAKEVDY-LLRNKWVPCLEFELEHGF 100          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.854e-15
Identity = 53/137 (38.69%), Postives = 70/137 (51.09%), Query Frame = 3
Query:   69 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            A  A++AQA+MVAPFTGLK+++AFP TKK  ND +++ SNGGRVQCMK                                        VWPP G KK+ETLSYLP L++   A+     L+    +P  +FE+   F
Sbjct:    6 ATVATVAQANMVAPFTGLKANAAFPVTKKV-NDFSTLPSNGGRVQCMK----------------------------------------VWPPLGKKKYETLSYLPDLTEVQLAKEVDY-LLRNKWVPCLEFELEHGF 100          
The following BLAST results are available for this feature:
BLAST of EY665438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RBS2_PEA3.591e-1840.54Ribulose bisphosphate carboxylase small chain 3C, ... [more]
RBS2_FLAPR6.126e-1841.26Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_FRIAG1.045e-1741.89Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_FRIAG3.040e-1741.22Ribulose bisphosphate carboxylase small chain 1/4,... [more]
RBS4_LEMGI3.971e-1744.09Ribulose bisphosphate carboxylase small chain SSU4... [more]
RBS3_LEMGI1.509e-1643.31Ribulose bisphosphate carboxylase small chain SSU4... [more]
RBS1_LEMGI3.361e-1642.28Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS7_FLAPR1.668e-1539.42Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS3_FLAPR3.716e-1538.69Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS1_FLAPR4.854e-1538.69Ribulose bisphosphate carboxylase small chain 1, c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-A09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665438 ID=EY665438; Name=EY665438; organism=Citrus sinensis; type=EST; length=885bp
TGCAAAGCTAGAAGAACGAGCAAGTACCAATGGCTTCCTCAATGATCTCA
TCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCAT
GGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCA
AGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTC
CAATGCATGAAGGTCATCATCATAATCATACAAGAATTCATTTCTTCTTT
TGCTTGTTTAAATTGACGGCTTTCTTCTTTTAGCTCTCAATTATGTTTTT
AATTAATTTTCTTGTGAGCTTGTATGTTACAGGTGTGGCCACCAACTGGC
TTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAAG
CTTTGCTCAAGGGAAATCAATTACCTTAATCCCTCCGGCTGGGATCCCTG
GTTGGAAATTCGAAGTTGGAGGGGCTTTTCTCTCTCTCTCTCTCTGGCTT
CTCTTAATAAATACTATTTATTTTGGAGGAAACCTAATCTTTGTGCTTTA
AGAAAAAAAATTACAACTTGTCCTGAATTCTATTGGGCACAAAAAAATCC
ATTTCAAAATCCAAAAACCTGGATTAAAACAATTGGTTTAATTTAAATAC
TAAAGCCTTTTGGGGTAAAAAACGGGAATTTTTACCAGGCAAAAGGGGGG
GGGGAATTTTTGTGTTTTTTTCTTTTTTTTTTTTTTTTTTTCTTTTGGGG
GGCGGGGGAACTGGCAAAAAGAAGGGGGGGGGAACCGGGGAACCCCCCCC
AATTTCCCCCCAGAATATTTTCACACAGGGGACCCTCTCGTGGTAAAATG
GGAAAAACACTCCCCCTCTTCGGGGGGGGGCCAAC
back to top