EY665438

Overview
NameEY665438
Unique NameEY665438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.339e-15
Identity = 53/137 (38.69%), Postives = 70/137 (51.09%), Query Frame = 3
Query:   69 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            A  A++AQA+MVAPFTGLKS++AFP TKK  ND +++ SNGGRVQCMK                                        VWPP G K++ETLSYLP L++   A+     L+    +P  +FE+   F
Sbjct:    6 ATVATVAQANMVAPFTGLKSNAAFPVTKKV-NDFSTLPSNGGRVQCMK----------------------------------------VWPPLGKKRYETLSYLPNLTEVQLAKEVDY-LLRNKWVPCLEFELEHGF 100          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.409e-14
Identity = 52/137 (37.96%), Postives = 69/137 (50.36%), Query Frame = 3
Query:   69 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            A  A++AQA+MVAPFTGLK+++AFP TKK  ND +++ SNGGRVQCMK                                        VWPP G KK+ TLSYLP L++   A+     L+    +P  +FE+   F
Sbjct:    6 ATVAAVAQANMVAPFTGLKANAAFPVTKKV-NDFSTLPSNGGRVQCMK----------------------------------------VWPPLGKKKYXTLSYLPNLTEAQLAKEVDY-LLRNKWVPCLEFELEHGF 100          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.561e-13
Identity = 50/137 (36.50%), Postives = 67/137 (48.91%), Query Frame = 3
Query:   69 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            A  A++ Q +MVAPFTGLK+++AFP TKK N   +++ SNGGRVQCMK                                        VWPP G KK+ETLSYLP L++   A+     L+    +P  +FE+   F
Sbjct:    6 ATVAAVPQTNMVAPFTGLKANAAFPVTKKVNG-FSTLPSNGGRVQCMK----------------------------------------VWPPVGKKKYETLSYLPELTEAQLAKEVDY-LLRNKWVPCLEFELEHGF 100          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.039e-13
Identity = 52/127 (40.94%), Postives = 62/127 (48.82%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQ 410
            MASSM+ S   A  +R S AQ++MV PF GL SS+AFP T+K   D + + SNG RV+CM                                        QVWPP G KKFETLSYLPPL+ E   Q
Sbjct:    1 MASSMMVST--AAVSRTSPAQSNMVVPFAGLHSSAAFPVTRKF-ADSSKLPSNGLRVRCM----------------------------------------QVWPPEGKKKFETLSYLPPLTREQLGQ 84          
The following BLAST results are available for this feature:
BLAST of EY665438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RBS5_FLAPR6.339e-1538.69Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS6_FLAPR2.409e-1437.96Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS_FLATR1.561e-1336.50Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_ZANAE2.039e-1340.94Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-A09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665438 ID=EY665438; Name=EY665438; organism=Citrus sinensis; type=EST; length=885bp
TGCAAAGCTAGAAGAACGAGCAAGTACCAATGGCTTCCTCAATGATCTCA
TCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCAT
GGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCA
AGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTC
CAATGCATGAAGGTCATCATCATAATCATACAAGAATTCATTTCTTCTTT
TGCTTGTTTAAATTGACGGCTTTCTTCTTTTAGCTCTCAATTATGTTTTT
AATTAATTTTCTTGTGAGCTTGTATGTTACAGGTGTGGCCACCAACTGGC
TTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAAG
CTTTGCTCAAGGGAAATCAATTACCTTAATCCCTCCGGCTGGGATCCCTG
GTTGGAAATTCGAAGTTGGAGGGGCTTTTCTCTCTCTCTCTCTCTGGCTT
CTCTTAATAAATACTATTTATTTTGGAGGAAACCTAATCTTTGTGCTTTA
AGAAAAAAAATTACAACTTGTCCTGAATTCTATTGGGCACAAAAAAATCC
ATTTCAAAATCCAAAAACCTGGATTAAAACAATTGGTTTAATTTAAATAC
TAAAGCCTTTTGGGGTAAAAAACGGGAATTTTTACCAGGCAAAAGGGGGG
GGGGAATTTTTGTGTTTTTTTCTTTTTTTTTTTTTTTTTTTCTTTTGGGG
GGCGGGGGAACTGGCAAAAAGAAGGGGGGGGGAACCGGGGAACCCCCCCC
AATTTCCCCCCAGAATATTTTCACACAGGGGACCCTCTCGTGGTAAAATG
GGAAAAACACTCCCCCTCTTCGGGGGGGGGCCAAC
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