CV885686

Overview
NameCV885686
Unique NameCV885686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885686 vs. ExPASy Swiss-Prot
Match: ADF8_ORYSJ (Putative actin-depolymerizing factor 8 OS=Oryza sativa subsp. japonica GN=ADF8 PE=3 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.545e-32
Identity = 62/130 (47.69%), Postives = 98/130 (75.38%), Query Frame = -1
Query:  361 VHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 750
            V +  K  F EL  ++ +R+++FKI++++++++VEK G P ++Y+DF ASLPA+    AVYD DFV+ +NC+KS+IFFI+WSP  + +R+K IYA  +++F+ ELDG+  E+QATDP +M L+V + RAN
Sbjct:   19 VPEKSKSAFWELMRRKVHRYVIFKIDDRREEIVVEKTGAPWESYDDFTASLPAD----AVYDLDFVSDDNCRKSKIFFISWSPSLSCIRAKTIYAVWRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 144          
BLAST of CV885686 vs. ExPASy Swiss-Prot
Match: ACTP_ACACA (Actophorin OS=Acanthamoeba castellanii PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.308e-31
Identity = 63/132 (47.73%), Postives = 92/132 (69.70%), Query Frame = -1
Query:  364 GMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 759
            G+AV DDC  KF ELK    +R++ FK+     +V+VE +G P  TYEDF + LP  +CRYA++DY+F   +  Q+++I FI W+PD+A ++SKM+Y S+KD  K++L GIQVE+QATD +E+  D   +RA
Sbjct:    3 GIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEF-QVDGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERA 133          
BLAST of CV885686 vs. ExPASy Swiss-Prot
Match: COFI_YARLI (Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.072e-25
Identity = 58/134 (43.28%), Postives = 88/134 (65.67%), Query Frame = -1
Query:  361 GMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDF-VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 759
            G+AV+D     F ELK  +   FI++KI + + +++VE+ G  T +Y+ F   LP  +CRYAVYD+++ +++   ++S++ F  WSPDTA VRSKMIYASSKD  +R L GI  E+Q TD SE+  +   +R +
Sbjct:   15 GVAVNDSALQAFNELKLGKKVTFIIYKINDAKTEIVVEEEGT-TDSYDTFLGKLPENDCRYAVYDFEYEISSGEGKRSKLVFFTWSPDTAPVRSKMIYASSKDSLRRALTGISTEIQGTDFSEVAYESVLERVS 147          
BLAST of CV885686 vs. ExPASy Swiss-Prot
Match: COFI_USTMA (Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.074e-25
Identity = 50/133 (37.59%), Postives = 86/133 (64.66%), Query Frame = -1
Query:  361 GMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 759
            G+ V  +C  KF ELK  +  ++I++ + +K  +++V+     T +Y+DF A LP  ECRYA+YD+++   +  ++++I F +WSPD A+++ KM++ASSKD  ++ L GI  E+Q TD SE+  D   D+ +
Sbjct:    4 GVKVSQECLDKFQELKLGKKIKYIIYSLNDKNTEIVVQNTSTST-SYDDFLAELPPTECRYAIYDFEYEKGDAGKRNKICFFSWSPDDAKIKPKMVFASSKDALRKALVGISTEIQGTDFSEVSYDTVLDKVS 135          
BLAST of CV885686 vs. ExPASy Swiss-Prot
Match: COFI_DEBHA (Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.684e-24
Identity = 52/134 (38.81%), Postives = 87/134 (64.93%), Query Frame = -1
Query:  361 GMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDF-VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 759
            G+AV D+    F +LK  + Y+FI+F + +++ +++VE+    +  Y+ F   LP  EC+YA+YD+++ +     ++S+I F  WSPDTA ++SKMIYASSKD  +R L+G+  ++Q TD SE+  +   DR +
Sbjct:    5 GVAVADESLTAFNDLKLGKKYKFIIFALNDQKTEIVVEETSNNSD-YDAFLEKLPENECKYAIYDFEYEIGGGEGKRSKIVFFTWSPDTAPIKSKMIYASSKDALRRALNGVSSDVQGTDFSEVAYESVLDRVS 137          
BLAST of CV885686 vs. ExPASy Swiss-Prot
Match: COFI_ZYGRO (Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.814e-23
Identity = 54/134 (40.30%), Postives = 84/134 (62.69%), Query Frame = -1
Query:  361 GMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAEN-CQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 759
            G++V D+    F +LK  + Y+F+++ I E  K  IV K    +Q+Y++F   LP  +C YA+YD+++    N  ++S+I F  WSPDTA VRSKM+YASSKD  +R L G+  ++Q TD SE+  +   +R +
Sbjct:    5 GVSVADESLQAFNDLKLGKKYKFVLYGISE-DKTTIVVKETSTSQSYDEFLGKLPENDCLYAIYDFEYEIGGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALTGVSSDIQGTDFSEVSFETVLERVS 137          
BLAST of CV885686 vs. ExPASy Swiss-Prot
Match: COFI_SCHPO (Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.981e-23
Identity = 50/131 (38.17%), Postives = 85/131 (64.89%), Query Frame = -1
Query:  367 GMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 759
            G+ V  +C   F ELK  ++ R++VFK+ + + +++VEK     + ++ F   LP ++CRYA+YD++F   E   +++I FI+WSPD A ++SKM+Y+SSKD  +R   GI  ++QATD SE+  +   ++
Sbjct:    5 GVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTD-KDFDTFLGDLPEKDCRYAIYDFEFNLGEGV-RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYETVLEK 133          
BLAST of CV885686 vs. ExPASy Swiss-Prot
Match: COFI_YEAST (Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.505e-23
Identity = 51/134 (38.06%), Postives = 85/134 (63.43%), Query Frame = -1
Query:  361 GMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDF-VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 759
            G+AV D+    F +LK  + Y+FI+F + + + +++V++      +Y+ F   LP  +C YA+YD+++ +     ++S+I F  WSPDTA VRSKM+YASSKD  +R L+G+  ++Q TD SE+  D   +R +
Sbjct:    5 GVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETSTDP-SYDAFLEKLPENDCLYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLERVS 137          
BLAST of CV885686 vs. ExPASy Swiss-Prot
Match: COFI_CANGA (Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.496e-23
Identity = 51/134 (38.06%), Postives = 86/134 (64.18%), Query Frame = -1
Query:  361 GMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAEN-CQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 759
            G+AV D+    F +LK    Y+F++F + + + +++V++      +Y+ F   LP  +C YAVYD+++  +E+  ++S+I F  WSPDTA VR KM+YASSKD  KR L+G+ +E+Q TD SE+  +   ++ +
Sbjct:    5 GVAVADESIQAFNDLKLGMKYKFVLFSLNDAKTEIVVKETSSDP-SYDAFLEKLPENDCLYAVYDFEYQISESEGKRSKIVFFTWSPDTASVRPKMVYASSKDALKRALNGVAIEIQGTDFSEVSYEAVLEKVS 137          
BLAST of CV885686 vs. ExPASy Swiss-Prot
Match: COFI_KLULA (Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.893e-22
Identity = 52/127 (40.94%), Postives = 82/127 (64.57%), Query Frame = -1
Query:  382 GMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAEN-CQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 759
            G+AV D+    F +LK  + Y+FI++ + + + ++IV++     Q Y+ F   LP  +C YAVYD+++    N  ++S+I F  WSPDTA VRSKM+YASSKD  +R L+G+  ++Q TD SE+  +
Sbjct:    5 GVAVADESLNAFNDLKLGKKYKFILYALNDSKTEIIVKETSAE-QDYDKFLEQLPENDCLYAVYDFEYELGNNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYE 130          
The following BLAST results are available for this feature:
BLAST of CV885686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ADF8_ORYSJ1.545e-3247.69Putative actin-depolymerizing factor 8 OS=Oryza sa... [more]
ACTP_ACACA1.308e-3147.73Actophorin OS=Acanthamoeba castellanii PE=1 SV=2[more]
COFI_YARLI1.072e-2543.28Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1[more]
COFI_USTMA4.074e-2537.59Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1[more]
COFI_DEBHA7.684e-2438.81Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1[more]
COFI_ZYGRO3.814e-2340.30Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 S... [more]
COFI_SCHPO4.981e-2338.17Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 ... [more]
COFI_YEAST6.505e-2338.06Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 S... [more]
COFI_CANGA8.496e-2338.06Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1[more]
COFI_KLULA1.893e-2240.94Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_019C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_019_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885686 ID=CV885686; Name=CV885686; organism=Citrus sinensis; type=EST; length=759bp
CTTTTTTTTTATGAACATCCATTTATAAAGTTCAAAATGAAACATCCATT
TTCAAAGTAAAAACAACCCTAACAGAGGGTTATCCATCCCCCATCAATTG
AAACACCTTAGCTTGAAGAAATAGCTATAAGTAGCCACTCATCCCATAAC
TTCCACACCACAACAAATCAATAAAGACATCATAAAGACCACTGAAATGG
TTCTAGACGAGAATACTGCATCGGTGAAACTTGAACAACAAACCAATATC
ATAATTCAGTTAGATTCAAGCTGCCGCCACAAACTATTAACATTTCACCT
TTAGGTAAAGCACAAAAGATAAAAACAATCTCAATTGCTGAGATCAGGAG
CCTTTATTTAGTTGGCACGGTCTTTAAATACGTCAAGACCCATCTCAGAT
GGATCAGTTGCCTGCAGCTCCACTTGAATGCCATCTAGCTCTCTCTTGAA
CCTGTCCTTGGAGCTTGCATAAATCATCTTGCTTCTTACTCTTGCAGTGT
CGGGAGACCATGCAATGAAGAAAATCCTGCTTTTTTGGCAGTTCTCTGCG
GTAACAAAATCATAATCATACACAGCATATCGGCACTCCTCAGCAGGAAG
GCTGGCAGCAAAATCTTCATAGGTTTGAGTTGGCTCACCAAGTTTTTCCA
CAATGACCTGCTTCTGCTTCTCCTCAATCTTAAATACTATGAAGCGGTAG
GTTCTCTTGGCTTTCAACTCCAAGAACTTTAGCTTACAGTCATCATGTAC
AGCCATCCC
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