CX043276
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB1_ANASP (Tryptophan synthase beta chain 1 OS=Anabaena sp. (strain PCC 7120) GN=trpB1 PE=3 SV=1) HSP 1 Score: 312.383 bits (799), Expect = 1.968e-84 Identity = 143/223 (64.13%), Postives = 181/223 (81.17%), Query Frame = -1 Query: 144 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 812 G K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F +IIGKETR Q EKWGG PD+LLACVG GSNA+GLFHEFI++ +RLIGVEAAG G+D+ KHAATL G VGV HGAMSYLLQDE+GQ++ HS+ GL+YPGVGPE S+L+D RAE+Y+ TD++A+ +Q+L RLEGI PALE SHA+A+LE LCP L ++V+NCSG GDKDV TV Sbjct: 181 GTLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMIVRDFHAIIGKETRVQCQEKWGGLPDILLACVGGGSNAIGLFHEFIDEPSIRLIGVEAAGEGVDTDKHAATLTLGRVGVLHGAMSYLLQDEDGQVIEAHSISAGLDYPGVGPEHSYLKDIRRAEYYSVTDKQALDGFQQLSRLEGIIPALETSHAIAYLETLCPQLNGSPRIVINCSGRGDKDVQTV 403
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SYNS3 (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9311) GN=trpB PE=3 SV=1) HSP 1 Score: 296.204 bits (757), Expect = 1.460e-79 Identity = 138/227 (60.79%), Postives = 177/227 (77.97%), Query Frame = -1 Query: 123 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRYNQ 803 K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F ++IG E R+Q E +G PDVLLACVG GSNA+GLFH F+ D VRLIGVEAAG G+ +G+HAAT+ +G VGV HGAMS LLQD++GQ+ HS+ GL+YPGVGPE S+LRD GRAE+ TD EA+ A + + LEGI PALE +HA A+LE LCPTLPNG+++V+NCSG GDKDV+TV NQ Sbjct: 191 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGNEAREQCKESFGRLPDVLLACVGGGSNAMGLFHPFVQDTSVRLIGVEAAGDGVATGRHAATITEGRVGVLHGAMSLLLQDQDGQVQEAHSISAGLDYPGVGPEHSYLRDIGRAEYGAVTDDEAITALRLVSELEGIIPALETAHAFAWLEMLCPTLPNGSEIVINCSGRGDKDVNTVAEKLGNQ 417
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PROMA (Tryptophan synthase beta chain OS=Prochlorococcus marinus GN=trpB PE=3 SV=1) HSP 1 Score: 295.049 bits (754), Expect = 3.252e-79 Identity = 136/220 (61.82%), Postives = 175/220 (79.55%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F ++IG+E +KQ +E +G PDVLLACVG GSNA+GLFH FI D VR+IGVEAAG G+ +G+HAAT+ +G +GV HGAMS LLQD GQ+ HS+ GL+YPGVGPE S+L++ GRAE+ TDQEA+ A Q L EGI PALE +HALAFLEKLCPTL +G ++V+NCSG GDKDV+TV Sbjct: 189 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGEEAKKQCLEAFGRSPDVLLACVGGGSNAMGLFHPFIEDRSVRMIGVEAAGDGVHTGRHAATITEGRIGVLHGAMSLLLQDSNGQVQEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDQEALSALQLLSEKEGIIPALETAHALAFLEKLCPTLSSGKEIVINCSGRGDKDVNTV 408
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PROM1 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL1A) GN=trpB PE=3 SV=1) HSP 1 Score: 292.352 bits (747), Expect = 2.108e-78 Identity = 131/220 (59.55%), Postives = 180/220 (81.82%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F ++IG+ET++Q + +G PDVLLACVG GSNA+GLFH F+ D+ VR+IGVEAAG G+++G+HAAT+ +G VGV HGAMS LLQD++GQ+ HS+ GL+YPGVGPE S+L++ GRAE+ TD EA++A Q + +LEGI PALE +HA A+LEKLCPTL + +++V+NCSG GDKDV+TV Sbjct: 190 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGEETKQQCKQAFGRSPDVLLACVGGGSNAMGLFHSFVEDKSVRMIGVEAAGDGVETGRHAATITEGRVGVLHGAMSLLLQDKDGQVEEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDTEAIEALQLVSKLEGIIPALETAHAFAYLEKLCPTLNHNSEIVINCSGRGDKDVNTV 409
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PROMT (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL2A) GN=trpB PE=3 SV=1) HSP 1 Score: 291.967 bits (746), Expect = 2.753e-78 Identity = 130/220 (59.09%), Postives = 180/220 (81.82%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F ++IG+ET++Q + +G PDVLLACVG GSNA+GLFH F+ D+ VR+IGVEAAG G+++G+HAAT+ +G +GV HGAMS LLQD++GQ+ HS+ GL+YPGVGPE S+L++ GRAE+ TD EA++A Q + +LEGI PALE +HA A+LEKLCPTL + +++V+NCSG GDKDV+TV Sbjct: 190 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGEETKQQCKQAFGRSPDVLLACVGGGSNAMGLFHSFVEDKSVRMIGVEAAGDGVETGRHAATITEGRIGVLHGAMSLLLQDKDGQVEEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDTEAIEALQLVSKLEGIIPALETAHAFAYLEKLCPTLNHNSEIVINCSGRGDKDVNTV 409
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SYNJB (Tryptophan synthase beta chain OS=Synechococcus sp. GN=trpB PE=3 SV=1) HSP 1 Score: 290.812 bits (743), Expect = 6.133e-78 Identity = 142/231 (61.47%), Postives = 174/231 (75.32%), Query Frame = -1 Query: 135 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCP--------TLPNGAKVVVNCSGGGDKDVDTVVNY 803 K+A SEAIR+WV N+E ++Y+ GTV GPHP P +VR F +IG+ETR+Q EKWGG PDVLLACVG GSNALGLF+EF+ D VRLIG+EAAG GL + +HAATL +G +GV HGAMSYLLQDEEGQ+ HS+ GL+YPGVGPE S+L++ GRAE+Y TD EAV+A L RLEGI PALE +HALA+L+ L P + +VVVNCSG GDKD++TV Y Sbjct: 187 KDALSEAIRDWVTNVETTHYVIGTVAGPHPYPKLVRAFHDVIGQETRQQCQEKWGGLPDVLLACVGGGSNALGLFNEFVRDPQVRLIGIEAAGEGLHTPRHAATLNRGRIGVLHGAMSYLLQDEEGQVQEAHSISAGLDYPGVGPEHSYLKEIGRAEYYAVTDDEAVEALLLLSRLEGIIPALETAHALAYLKTLAPQQGLRPANAIGPQQRVVVNCSGRGDKDLNTVFKY 417
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPW (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH7803) GN=trpB PE=3 SV=1) HSP 1 Score: 289.656 bits (740), Expect = 1.366e-77 Identity = 136/220 (61.82%), Postives = 176/220 (80.00%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F ++IG+ETR+Q E +G PDVL+ACVG GSNA+GLFH F+ DVRLIGVEAAG G+ +G+HAAT+ +G VGV HGAMS LLQD++GQ+ HS+ GL+YPGVGPE S+LR+ GRAE+ TD EA++A Q + RLEGI PALE +HA A+LE LCPTL G +VV+NCSG GDKDV+TV Sbjct: 189 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGQETRQQCREAFGRLPDVLMACVGGGSNAMGLFHPFVECTDVRLIGVEAAGDGVATGRHAATITEGRVGVLHGAMSLLLQDQDGQVQEAHSISAGLDYPGVGPEHSYLREIGRAEYGAVTDAEALEALQLVSRLEGIIPALETAHAFAWLETLCPTLSAGTEVVLNCSGRGDKDVNTV 408
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PROM9 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9312) GN=trpB PE=3 SV=1) HSP 1 Score: 289.656 bits (740), Expect = 1.366e-77 Identity = 134/222 (60.36%), Postives = 173/222 (77.93%), Query Frame = -1 Query: 138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803 K+A+SEAIR+WV N+E ++Y+ G+V GPHP P +VR+F ++IG+ET+KQ E +G PD+LLACVG GSNA+GLFH FI + VRLIGVEAAG G+D+ KHAAT+ KG VG+ HG+MS LLQD+ GQ+ HS+ GL+YPGVGPE S L+D GRAE+ + TDQEA+ A + + LEGI PALE SHA A+L+KLCPTL +V+NCSG GDKDV+TV + Sbjct: 189 KDATSEAIRDWVSNVETTHYILGSVAGPHPFPKIVRDFHAVIGEETKKQCQESFGSLPDILLACVGGGSNAMGLFHPFIKETSVRLIGVEAAGSGVDTDKHAATITKGSVGILHGSMSLLLQDDNGQVQEAHSISAGLDYPGVGPEHSHLKDIGRAEYGSVTDQEALDALRLVSELEGIIPALETSHAFAWLDKLCPTLEKDTHIVINCSGRGDKDVNTVAS 410
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PROMS (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain AS9601) GN=trpB PE=3 SV=1) HSP 1 Score: 289.271 bits (739), Expect = 1.784e-77 Identity = 132/222 (59.46%), Postives = 174/222 (78.38%), Query Frame = -1 Query: 138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803 K+A+SEAIR+WV N+E ++Y+ G+V GPHP P +VR+F ++IG+ET+KQ +E +G PD+LLACVG GSNA+GLFH F+ + VRLIGVEAAG G+D+ KHAAT+ KG VG+ HG+MS LLQD+ GQ+ HS+ GL+YPGVGPE S L+D GRAE+ + TDQEA+ A + + LEGI PALE +HA A+L+KLCPTL +V+NCSG GDKDV+TV + Sbjct: 189 KDATSEAIRDWVSNVETTHYILGSVAGPHPFPKIVRDFHAVIGEETKKQCLESFGSLPDILLACVGGGSNAMGLFHPFVKETSVRLIGVEAAGSGVDTDKHAATITKGSVGILHGSMSLLLQDDNGQVQEAHSISAGLDYPGVGPEHSHLKDIGRAEYGSVTDQEALDALKLVSELEGIIPALETAHAFAWLDKLCPTLEKDTNIVINCSGRGDKDVNTVAS 410
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PROM2 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9215) GN=trpB PE=3 SV=1) HSP 1 Score: 288.886 bits (738), Expect = 2.330e-77 Identity = 132/222 (59.46%), Postives = 174/222 (78.38%), Query Frame = -1 Query: 138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803 K+A+SEAIR+WV N+E ++Y+ G+V GPHP P +VR+F ++IG+ET+KQ +E +G PD+LLACVG GSNA+GLFH F+ + VRLIGVEAAG G+D+ KHAAT+ KG VG+ HG+MS LLQD+ GQ+ HS+ GL+YPGVGPE S L+D GRAE+ + TDQEA+ + + + LEGI PALE SHA A+L+KLCPTL +V+NCSG GDKDV+TV + Sbjct: 189 KDATSEAIRDWVSNVESTHYILGSVAGPHPFPKIVRDFHAVIGEETKKQCLESFGSLPDILLACVGGGSNAMGLFHPFVKETSVRLIGVEAAGGGVDTDKHAATITKGSVGILHGSMSLLLQDDNGQVQEAHSISAGLDYPGVGPEHSHLKDIGRAEYGSVTDQEALDSLRLVSELEGIIPALETSHAFAWLDKLCPTLEKDTHIVINCSGRGDKDVNTVAS 410 The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 441
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bpback to top |