CX043276

Overview
NameCX043276
Unique NameCX043276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2462 contig Csv1_Contig2462:113..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB1_ANASP (Tryptophan synthase beta chain 1 OS=Anabaena sp. (strain PCC 7120) GN=trpB1 PE=3 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.968e-84
Identity = 143/223 (64.13%), Postives = 181/223 (81.17%), Query Frame = -1
Query:  144 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 812
            G  K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F +IIGKETR Q  EKWGG PD+LLACVG GSNA+GLFHEFI++  +RLIGVEAAG G+D+ KHAATL  G VGV HGAMSYLLQDE+GQ++  HS+  GL+YPGVGPE S+L+D  RAE+Y+ TD++A+  +Q+L RLEGI PALE SHA+A+LE LCP L    ++V+NCSG GDKDV TV
Sbjct:  181 GTLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMIVRDFHAIIGKETRVQCQEKWGGLPDILLACVGGGSNAIGLFHEFIDEPSIRLIGVEAAGEGVDTDKHAATLTLGRVGVLHGAMSYLLQDEDGQVIEAHSISAGLDYPGVGPEHSYLKDIRRAEYYSVTDKQALDGFQQLSRLEGIIPALETSHAIAYLETLCPQLNGSPRIVINCSGRGDKDVQTV 403          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SYNS3 (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9311) GN=trpB PE=3 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.460e-79
Identity = 138/227 (60.79%), Postives = 177/227 (77.97%), Query Frame = -1
Query:  123 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRYNQ 803
            K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F ++IG E R+Q  E +G  PDVLLACVG GSNA+GLFH F+ D  VRLIGVEAAG G+ +G+HAAT+ +G VGV HGAMS LLQD++GQ+   HS+  GL+YPGVGPE S+LRD GRAE+   TD EA+ A + +  LEGI PALE +HA A+LE LCPTLPNG+++V+NCSG GDKDV+TV     NQ
Sbjct:  191 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGNEAREQCKESFGRLPDVLLACVGGGSNAMGLFHPFVQDTSVRLIGVEAAGDGVATGRHAATITEGRVGVLHGAMSLLLQDQDGQVQEAHSISAGLDYPGVGPEHSYLRDIGRAEYGAVTDDEAITALRLVSELEGIIPALETAHAFAWLEMLCPTLPNGSEIVINCSGRGDKDVNTVAEKLGNQ 417          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PROMA (Tryptophan synthase beta chain OS=Prochlorococcus marinus GN=trpB PE=3 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 3.252e-79
Identity = 136/220 (61.82%), Postives = 175/220 (79.55%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F ++IG+E +KQ +E +G  PDVLLACVG GSNA+GLFH FI D  VR+IGVEAAG G+ +G+HAAT+ +G +GV HGAMS LLQD  GQ+   HS+  GL+YPGVGPE S+L++ GRAE+   TDQEA+ A Q L   EGI PALE +HALAFLEKLCPTL +G ++V+NCSG GDKDV+TV
Sbjct:  189 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGEEAKKQCLEAFGRSPDVLLACVGGGSNAMGLFHPFIEDRSVRMIGVEAAGDGVHTGRHAATITEGRIGVLHGAMSLLLQDSNGQVQEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDQEALSALQLLSEKEGIIPALETAHALAFLEKLCPTLSSGKEIVINCSGRGDKDVNTV 408          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PROM1 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL1A) GN=trpB PE=3 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.108e-78
Identity = 131/220 (59.55%), Postives = 180/220 (81.82%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F ++IG+ET++Q  + +G  PDVLLACVG GSNA+GLFH F+ D+ VR+IGVEAAG G+++G+HAAT+ +G VGV HGAMS LLQD++GQ+   HS+  GL+YPGVGPE S+L++ GRAE+   TD EA++A Q + +LEGI PALE +HA A+LEKLCPTL + +++V+NCSG GDKDV+TV
Sbjct:  190 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGEETKQQCKQAFGRSPDVLLACVGGGSNAMGLFHSFVEDKSVRMIGVEAAGDGVETGRHAATITEGRVGVLHGAMSLLLQDKDGQVEEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDTEAIEALQLVSKLEGIIPALETAHAFAYLEKLCPTLNHNSEIVINCSGRGDKDVNTV 409          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PROMT (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL2A) GN=trpB PE=3 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.753e-78
Identity = 130/220 (59.09%), Postives = 180/220 (81.82%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F ++IG+ET++Q  + +G  PDVLLACVG GSNA+GLFH F+ D+ VR+IGVEAAG G+++G+HAAT+ +G +GV HGAMS LLQD++GQ+   HS+  GL+YPGVGPE S+L++ GRAE+   TD EA++A Q + +LEGI PALE +HA A+LEKLCPTL + +++V+NCSG GDKDV+TV
Sbjct:  190 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGEETKQQCKQAFGRSPDVLLACVGGGSNAMGLFHSFVEDKSVRMIGVEAAGDGVETGRHAATITEGRIGVLHGAMSLLLQDKDGQVEEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDTEAIEALQLVSKLEGIIPALETAHAFAYLEKLCPTLNHNSEIVINCSGRGDKDVNTV 409          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SYNJB (Tryptophan synthase beta chain OS=Synechococcus sp. GN=trpB PE=3 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 6.133e-78
Identity = 142/231 (61.47%), Postives = 174/231 (75.32%), Query Frame = -1
Query:  135 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCP--------TLPNGAKVVVNCSGGGDKDVDTVVNY 803
            K+A SEAIR+WV N+E ++Y+ GTV GPHP P +VR F  +IG+ETR+Q  EKWGG PDVLLACVG GSNALGLF+EF+ D  VRLIG+EAAG GL + +HAATL +G +GV HGAMSYLLQDEEGQ+   HS+  GL+YPGVGPE S+L++ GRAE+Y  TD EAV+A   L RLEGI PALE +HALA+L+ L P         +    +VVVNCSG GDKD++TV  Y
Sbjct:  187 KDALSEAIRDWVTNVETTHYVIGTVAGPHPYPKLVRAFHDVIGQETRQQCQEKWGGLPDVLLACVGGGSNALGLFNEFVRDPQVRLIGIEAAGEGLHTPRHAATLNRGRIGVLHGAMSYLLQDEEGQVQEAHSISAGLDYPGVGPEHSYLKEIGRAEYYAVTDDEAVEALLLLSRLEGIIPALETAHALAYLKTLAPQQGLRPANAIGPQQRVVVNCSGRGDKDLNTVFKY 417          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPW (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH7803) GN=trpB PE=3 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.366e-77
Identity = 136/220 (61.82%), Postives = 176/220 (80.00%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F ++IG+ETR+Q  E +G  PDVL+ACVG GSNA+GLFH F+   DVRLIGVEAAG G+ +G+HAAT+ +G VGV HGAMS LLQD++GQ+   HS+  GL+YPGVGPE S+LR+ GRAE+   TD EA++A Q + RLEGI PALE +HA A+LE LCPTL  G +VV+NCSG GDKDV+TV
Sbjct:  189 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGQETRQQCREAFGRLPDVLMACVGGGSNAMGLFHPFVECTDVRLIGVEAAGDGVATGRHAATITEGRVGVLHGAMSLLLQDQDGQVQEAHSISAGLDYPGVGPEHSYLREIGRAEYGAVTDAEALEALQLVSRLEGIIPALETAHAFAWLETLCPTLSAGTEVVLNCSGRGDKDVNTV 408          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PROM9 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9312) GN=trpB PE=3 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.366e-77
Identity = 134/222 (60.36%), Postives = 173/222 (77.93%), Query Frame = -1
Query:  138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803
            K+A+SEAIR+WV N+E ++Y+ G+V GPHP P +VR+F ++IG+ET+KQ  E +G  PD+LLACVG GSNA+GLFH FI +  VRLIGVEAAG G+D+ KHAAT+ KG VG+ HG+MS LLQD+ GQ+   HS+  GL+YPGVGPE S L+D GRAE+ + TDQEA+ A + +  LEGI PALE SHA A+L+KLCPTL     +V+NCSG GDKDV+TV +
Sbjct:  189 KDATSEAIRDWVSNVETTHYILGSVAGPHPFPKIVRDFHAVIGEETKKQCQESFGSLPDILLACVGGGSNAMGLFHPFIKETSVRLIGVEAAGSGVDTDKHAATITKGSVGILHGSMSLLLQDDNGQVQEAHSISAGLDYPGVGPEHSHLKDIGRAEYGSVTDQEALDALRLVSELEGIIPALETSHAFAWLDKLCPTLEKDTHIVINCSGRGDKDVNTVAS 410          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PROMS (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain AS9601) GN=trpB PE=3 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.784e-77
Identity = 132/222 (59.46%), Postives = 174/222 (78.38%), Query Frame = -1
Query:  138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803
            K+A+SEAIR+WV N+E ++Y+ G+V GPHP P +VR+F ++IG+ET+KQ +E +G  PD+LLACVG GSNA+GLFH F+ +  VRLIGVEAAG G+D+ KHAAT+ KG VG+ HG+MS LLQD+ GQ+   HS+  GL+YPGVGPE S L+D GRAE+ + TDQEA+ A + +  LEGI PALE +HA A+L+KLCPTL     +V+NCSG GDKDV+TV +
Sbjct:  189 KDATSEAIRDWVSNVETTHYILGSVAGPHPFPKIVRDFHAVIGEETKKQCLESFGSLPDILLACVGGGSNAMGLFHPFVKETSVRLIGVEAAGSGVDTDKHAATITKGSVGILHGSMSLLLQDDNGQVQEAHSISAGLDYPGVGPEHSHLKDIGRAEYGSVTDQEALDALKLVSELEGIIPALETAHAFAWLDKLCPTLEKDTNIVINCSGRGDKDVNTVAS 410          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PROM2 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9215) GN=trpB PE=3 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.330e-77
Identity = 132/222 (59.46%), Postives = 174/222 (78.38%), Query Frame = -1
Query:  138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803
            K+A+SEAIR+WV N+E ++Y+ G+V GPHP P +VR+F ++IG+ET+KQ +E +G  PD+LLACVG GSNA+GLFH F+ +  VRLIGVEAAG G+D+ KHAAT+ KG VG+ HG+MS LLQD+ GQ+   HS+  GL+YPGVGPE S L+D GRAE+ + TDQEA+ + + +  LEGI PALE SHA A+L+KLCPTL     +V+NCSG GDKDV+TV +
Sbjct:  189 KDATSEAIRDWVSNVESTHYILGSVAGPHPFPKIVRDFHAVIGEETKKQCLESFGSLPDILLACVGGGSNAMGLFHPFVKETSVRLIGVEAAGGGVDTDKHAATITKGSVGILHGSMSLLLQDDNGQVQEAHSISAGLDYPGVGPEHSHLKDIGRAEYGSVTDQEALDSLRLVSELEGIIPALETSHAFAWLDKLCPTLEKDTHIVINCSGRGDKDVNTVAS 410          
The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
TRPB1_ANASP1.968e-8464.13Tryptophan synthase beta chain 1 OS=Anabaena sp. (... [more]
TRPB_SYNS31.460e-7960.79Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_PROMA3.252e-7961.82Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROM12.108e-7859.55Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROMT2.753e-7859.09Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_SYNJB6.133e-7861.47Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_SYNPW1.366e-7761.82Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_PROM91.366e-7760.36Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROMS1.784e-7759.46Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROM22.330e-7759.46Tryptophan synthase beta chain OS=Prochlorococcus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTGAGAAAAATAGGTCTTAAATTAATAGATTTCTCGGGTTGCTGCT
AAATTGACGGGAACCCTTAAATATTGTGGTCACCACTTCTTCGATCCATT
ACAATTTCTACGTCGATAATTATTGATTGTATCTGTAATTGACGACCGTG
TCGACGTCCTTATCCCCACCTCCACTACAGTTGACAACAACTTTTGCACC
ATTAGGTAAAGTAGGGCAAAGTTTCTCTAGAAATGCTAATGCATGAGATG
CCTCAAGGGCCGGAAATATGCCTTCTAATCTGCACAGCCGTTGATATGCT
TGGACAGCTTCTTGGTCAGTCGCAGTGTAGAACTCCGCACGCCCAGTGTC
CCTAAGAAAGCTTATCTCCGGGCCAACTCCTGGATACTCTAGCCCTACAC
CGACAGAATGAGTCCCCAAGATTTGGCCTTCTTCATCTTGCAACAAGTAG
CTCATGGCTCCATGATAAACACCCACTTCCCCTTTAGCCAGAGTTGCAGC
GTGTTTGCCGCTGTCCAAGCCAAATCCAGCAGCCTCCACTCCAATCAATC
TCACATCTTCATCATTTATGAATTCATGAAACAAACCCAACGCATTTGAT
CCACTGCCCACACAAGCCAGCAATACATCAGGCTTGCCTCCCCATTTTTC
CATTGCTTGTTTTCTCGTTTCTTTGCCTATGATTGATTGAAATTCTCGTA
CCATTATTGGACACGGGTGAGGCCCCACCACCGTACCCGTTAAATAATAG
CTTTTTTCTAAGTTCCCCACCCAATTTCTGATAGCTTCTGAGCTTGCTTC
TTTGAAACATCCATCCACTGC
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