CX043276
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_CLOB8 (Tryptophan synthase beta chain OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=trpB PE=3 SV=1) HSP 1 Score: 253.062 bits (645), Expect = 1.417e-66 Identity = 121/223 (54.26%), Postives = 165/223 (73.99%), Query Frame = -1 Query: 135 EASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQ-AYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 800 +A +EAIR W N+E +YY+ GT GPHP P MVR FQ +IG E RKQ +E G PD +LA VG GSNA+G+F+ FI+DE+V LIGVEAAG G+++G+HAAT+ K E G+ HG +SY+LQD +G +L +S+ GL+YPGVGPE ++L +T RAE+ + TD+EAV+ + L R+EGI PALE+SHA+A+ +KL TL + ++VN SG GDKD+D V+ Y Sbjct: 165 DAVTEAIRYWASNVEDTYYVLGTAAGPHPYPTMVRNFQRVIGDEARKQILELEGRLPDYILAPVGGGSNAIGIFYPFIHDEEVNLIGVEAAGKGIETGEHAATITKKEKGILHGMLSYVLQDNDGGVLEAYSISAGLDYPGVGPEHAYLAETNRAEYESITDEEAVRDGFMYLTRIEGIVPALESSHAVAYAKKLAQTLSSDKIIIVNISGRGDKDMDAVLAY 387
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SULSY (Tryptophan synthase beta chain OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=trpB PE=3 SV=1) HSP 1 Score: 252.677 bits (644), Expect = 1.851e-66 Identity = 116/222 (52.25%), Postives = 166/222 (74.77%), Query Frame = -1 Query: 138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803 K+A +EA+R+WV N++ ++Y+ G+ +GPHP P++VR+FQS+IG+E ++Q +E G PDV++ACVG GSNA+G+F+ FI D VRL+GVEA G+G+++G HAA++ G +GV HG SY +QDE GQI THS+ GL+YPGVGPE +FL++ RAE+ TATD+EA++ + L R EGI PALE+SHA+ ++ +L VV+N SG GDKDV +V N Sbjct: 171 KDAVNEALRDWVTNVKTTHYIIGSALGPHPFPMIVRDFQSVIGEEVKQQILEIEGKLPDVIVACVGGGSNAIGIFYPFIEDTQVRLVGVEAGGYGIETGMHAASINGGTIGVLHGMKSYFIQDEWGQIESTHSISAGLDYPGVGPEHAFLKEIKRAEYITATDEEALEGFLLLSRTEGIIPALESSHAIIKAVEIAKSLDKSKSVVINLSGRGDKDVQSVKN 392
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_STRAW (Tryptophan synthase beta chain OS=Streptomyces avermitilis GN=trpB PE=3 SV=1) HSP 1 Score: 252.677 bits (644), Expect = 1.851e-66 Identity = 119/223 (53.36%), Postives = 160/223 (71.75%), Query Frame = -1 Query: 135 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 803 K+A +EA R+WV N+++++YL GTV GPHP P MVR+F +IG E R+Q +E+ G PD +ACVG GSNA+GLFH FI D VRLIG E AG GL++G+HAATL GE G+ HG+ SY+LQD+EGQI +S+ GL+YPG+GPE ++L+D+GR E+ TD A+QA + L R EGI PA+E++HALA ++ L ++VN SG GDKD+DT Y Sbjct: 180 KDAINEAFRDWVANVDRTHYLFGTVAGPHPFPAMVRDFHRVIGVEARRQILERAGRLPDAAVACVGGGSNAIGLFHAFIPDTGVRLIGCEPAGHGLETGEHAATLTAGEPGILHGSRSYVLQDDEGQITEPYSISAGLDYPGIGPEHAYLKDSGRGEYRAVTDDAAMQALRLLSRTEGIIPAIESAHALAGALEIGKELGKDGLILVNLSGRGDKDMDTAARY 402
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_HELPJ (Tryptophan synthase beta chain OS=Helicobacter pylori J99 GN=trpB PE=3 SV=1) HSP 1 Score: 252.292 bits (643), Expect = 2.417e-66 Identity = 119/222 (53.60%), Postives = 162/222 (72.97%), Query Frame = -1 Query: 138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803 K+A +EA+R+W + + ++YL GT GPHP P MV+ FQ +IG E + Q +EK PD ++ACVG GSNA+G+F F+ND++V+LIGVE AG GL++ KH ATL KG VG+ HG +YLLQD+EGQI +HS+ GL+YPGVGPE S+L++ GRA + +A+D EA++A++ LC+ EGI PALE+SHALA+ KL +VVN SG GDKD+ TV N Sbjct: 165 KDAVNEALRDWASSYKDTHYLLGTSAGPHPYPTMVKTFQKMIGDEVKSQILEKENRLPDYVIACVGGGSNAIGIFSAFLNDKEVKLIGVEPAGLGLETNKHGATLNKGRVGILHGNKTYLLQDDEGQIAESHSISAGLDYPGVGPEHSYLKEIGRAVYESASDIEALEAFRLLCQKEGIIPALESSHALAYALKLAQKCAQEKIIVVNLSGRGDKDLSTVYN 386
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_CLONN (Tryptophan synthase beta chain OS=Clostridium novyi (strain NT) GN=trpB PE=3 SV=1) HSP 1 Score: 252.292 bits (643), Expect = 2.417e-66 Identity = 115/227 (50.66%), Postives = 162/227 (71.37%), Query Frame = -1 Query: 135 DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 815 +G K+A EAI+ WV + + ++Y+ G+ VGPHP P MVREFQ IIG+ET+ Q + G PD L+ACVG GSNA+GLF+ FI DE++ +IGVEA G G+++G+H A A G VGV HG + +++D+ G + +S+ GL+YPGVGPE ++L D GRA++ + TD+EAV+A++ LC EGI PALE+SHA+A+ KL P + +VVN SG GDKDV+T+ Y Sbjct: 160 NGTLKDAVDEAIKQWVKSSDDTFYVLGSAVGPHPYPTMVREFQKIIGEETKDQILRMEGRLPDTLIACVGGGSNAIGLFYPFIKDENIEIIGVEAGGKGVETGEHGAAFADGRVGVIHGMKTVIMEDDNGNVKEAYSISAGLDYPGVGPEHAYLNDIGRAKYVSITDEEAVEAFKYLCANEGIIPALESSHAIAYTMKLAPNMDKDKIIVVNLSGRGDKDVETISEY 386
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_RHOPT (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris (strain TIE-1) GN=trpB PE=3 SV=1) HSP 1 Score: 251.906 bits (642), Expect = 3.157e-66 Identity = 123/223 (55.16%), Postives = 160/223 (71.75%), Query Frame = -1 Query: 135 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 803 K+A +EA+R+WV N+ ++Y GTV GPHP P+MVR+FQ++IG+E R+Q M+ G PD L+AC+G GSNA+GLFH F++D V + GVEAAG GLD HAA++A G+ GV HG +YLL D +GQI HS+ GL+YPGVGPE S+L D GR F +ATD EA+ A++ CRLEGI PALE SHALA + L P LP +VVN SG GDKD+ +V + Sbjct: 178 KDAMNEALRDWVTNVHDTFYCIGTVAGPHPYPMMVRDFQAVIGQEVREQIMQAEGRLPDSLVACIGGGSNAMGLFHPFLDDPGVAIYGVEAAGHGLDK-LHAASIAGGKPGVLHGNRTYLLMDADGQIEEAHSISAGLDYPGVGPEHSWLHDVGRVNFLSATDTEALDAFKLCCRLEGIIPALEPSHALAKVADLAPKLPKDHLMVVNMSGRGDKDLASVAEH 399
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_RHOPA (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris GN=trpB PE=3 SV=1) HSP 1 Score: 251.906 bits (642), Expect = 3.157e-66 Identity = 123/223 (55.16%), Postives = 160/223 (71.75%), Query Frame = -1 Query: 135 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 803 K+A +EA+R+WV N+ ++Y GTV GPHP P+MVR+FQ++IG+E R+Q M+ G PD L+AC+G GSNA+GLFH F++D V + GVEAAG GLD HAA++A G+ GV HG +YLL D +GQI HS+ GL+YPGVGPE S+L D GR F +ATD EA+ A++ CRLEGI PALE SHALA + L P LP +VVN SG GDKD+ +V + Sbjct: 178 KDAMNEALRDWVTNVHDTFYCIGTVAGPHPYPMMVRDFQAVIGQEVREQIMQAEGRLPDSLVACIGGGSNAMGLFHPFLDDPGVAIYGVEAAGHGLDK-LHAASIAGGKPGVLHGNRTYLLMDADGQIEEAHSISAGLDYPGVGPEHSWLHDVGRVNFLSATDTEALDAFKLCCRLEGIIPALEPSHALAKVADLAPKLPKDHLMVVNMSGRGDKDLASVAEH 399
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PARDP (Tryptophan synthase beta chain OS=Paracoccus denitrificans (strain Pd 1222) GN=trpB PE=3 SV=1) HSP 1 Score: 251.906 bits (642), Expect = 3.157e-66 Identity = 125/229 (54.59%), Postives = 166/229 (72.49%), Query Frame = -1 Query: 135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWG-GK-PDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSG-KHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812 G K+A ++A+R+WV N+ ++Y GTV GPHP P MVR+FQ IIG+ETR+Q E+ G G+ PD ++A +G GSNA+GLFH F+++ VR+IGVEA G G+D +H A+L G GV HG +YLLQD EGQIL HS+ GL+YPG+GPE ++L++ GRAE+ + TD EA+ A+Q LCRLEGI PALE SHALA + K+ P LP +VVN SG GDKD+ TV + Sbjct: 175 GTLKDAMNDALRDWVTNVRDTFYCIGTVAGPHPYPAMVRDFQCIIGRETRRQLAEQEGEGRLPDSVVAAIGGGSNAMGLFHPFLDEPSVRIIGVEAGGKGVDERMQHCASLTGGRPGVLHGNRTYLLQDGEGQILEGHSISAGLDYPGIGPEHAWLKEQGRAEYVSVTDDEALAAFQTLCRLEGIIPALEPSHALAHVVKIAPDLPRDHIMVVNLSGRGDKDIFTVAKH 403
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_NOVAD (Tryptophan synthase beta chain OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=trpB PE=3 SV=1) HSP 1 Score: 251.906 bits (642), Expect = 3.157e-66 Identity = 115/226 (50.88%), Postives = 164/226 (72.57%), Query Frame = -1 Query: 135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812 G K+A +EA+R+WV N+ ++Y+ GT GPHP P +VR+FQS+IGKE R Q + + G PD+L+A +G GSNA+GLFH F++D VR++GVEAAG GLD +HAA+LA G G+ HG +YLLQDE+GQI HS+ GL+YPG+GPE ++L++ GR ++ + TD EA+ A+Q LCR EGI PALE +HA+A ++K+ PT+ ++ N G GDKD+ +V + Sbjct: 175 GTLKDAMNEALRDWVANVHNTFYIIGTAAGPHPYPELVRDFQSVIGKEARAQMLSRTGRLPDLLVAAIGGGSNAIGLFHPFLDDPSVRMLGVEAAGHGLDK-EHAASLAGGRPGILHGNKTYLLQDEDGQITEGHSISAGLDYPGIGPEHAWLKEIGRVDYTSVTDTEALDAFQLLCRTEGIIPALEPAHAIAAVKKVAPTMGKDEIILANLCGRGDKDIFSVAEH 399
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_BACC1 (Tryptophan synthase beta chain OS=Bacillus cereus (strain ATCC 10987) GN=trpB PE=3 SV=1) HSP 1 Score: 251.906 bits (642), Expect = 3.157e-66 Identity = 119/229 (51.97%), Postives = 167/229 (72.93%), Query Frame = -1 Query: 135 AVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 821 A G K+A +EA+R WV ++ ++Y+ G+V+GPHP P +VR+FQS+IGKET+KQ G P+ ++AC+G GSNA+G+F+ F++DE+V L GVEAAG G+ + +HAATL KG VGV HG+M YLLQ+EEGQI HS+ GL+YPGVGPE S L+D GR +++ TD EA++A+Q L + EGI PALE+SHA+A+ KL + +V+ SG GDKDV+++ Y Sbjct: 165 AGSGTLKDAVNEALRYWVSHVHDTHYIMGSVLGPHPFPQIVRDFQSVIGKETKKQYEALEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEQHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAAQMKKDEGLVICLSGRGDKDVESIKRY 393 The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 441
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bpback to top |