CX043276

Overview
NameCX043276
Unique NameCX043276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_CLOB8 (Tryptophan synthase beta chain OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=trpB PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.417e-66
Identity = 121/223 (54.26%), Postives = 165/223 (73.99%), Query Frame = -1
Query:  135 EASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQ-AYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 800
            +A +EAIR W  N+E +YY+ GT  GPHP P MVR FQ +IG E RKQ +E  G  PD +LA VG GSNA+G+F+ FI+DE+V LIGVEAAG G+++G+HAAT+ K E G+ HG +SY+LQD +G +L  +S+  GL+YPGVGPE ++L +T RAE+ + TD+EAV+  +  L R+EGI PALE+SHA+A+ +KL  TL +   ++VN SG GDKD+D V+ Y
Sbjct:  165 DAVTEAIRYWASNVEDTYYVLGTAAGPHPYPTMVRNFQRVIGDEARKQILELEGRLPDYILAPVGGGSNAIGIFYPFIHDEEVNLIGVEAAGKGIETGEHAATITKKEKGILHGMLSYVLQDNDGGVLEAYSISAGLDYPGVGPEHAYLAETNRAEYESITDEEAVRDGFMYLTRIEGIVPALESSHAVAYAKKLAQTLSSDKIIIVNISGRGDKDMDAVLAY 387          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SULSY (Tryptophan synthase beta chain OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=trpB PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.851e-66
Identity = 116/222 (52.25%), Postives = 166/222 (74.77%), Query Frame = -1
Query:  138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803
            K+A +EA+R+WV N++ ++Y+ G+ +GPHP P++VR+FQS+IG+E ++Q +E  G  PDV++ACVG GSNA+G+F+ FI D  VRL+GVEA G+G+++G HAA++  G +GV HG  SY +QDE GQI  THS+  GL+YPGVGPE +FL++  RAE+ TATD+EA++ +  L R EGI PALE+SHA+    ++  +L     VV+N SG GDKDV +V N
Sbjct:  171 KDAVNEALRDWVTNVKTTHYIIGSALGPHPFPMIVRDFQSVIGEEVKQQILEIEGKLPDVIVACVGGGSNAIGIFYPFIEDTQVRLVGVEAGGYGIETGMHAASINGGTIGVLHGMKSYFIQDEWGQIESTHSISAGLDYPGVGPEHAFLKEIKRAEYITATDEEALEGFLLLSRTEGIIPALESSHAIIKAVEIAKSLDKSKSVVINLSGRGDKDVQSVKN 392          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_STRAW (Tryptophan synthase beta chain OS=Streptomyces avermitilis GN=trpB PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.851e-66
Identity = 119/223 (53.36%), Postives = 160/223 (71.75%), Query Frame = -1
Query:  135 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 803
            K+A +EA R+WV N+++++YL GTV GPHP P MVR+F  +IG E R+Q +E+ G  PD  +ACVG GSNA+GLFH FI D  VRLIG E AG GL++G+HAATL  GE G+ HG+ SY+LQD+EGQI   +S+  GL+YPG+GPE ++L+D+GR E+   TD  A+QA + L R EGI PA+E++HALA   ++   L     ++VN SG GDKD+DT   Y
Sbjct:  180 KDAINEAFRDWVANVDRTHYLFGTVAGPHPFPAMVRDFHRVIGVEARRQILERAGRLPDAAVACVGGGSNAIGLFHAFIPDTGVRLIGCEPAGHGLETGEHAATLTAGEPGILHGSRSYVLQDDEGQITEPYSISAGLDYPGIGPEHAYLKDSGRGEYRAVTDDAAMQALRLLSRTEGIIPAIESAHALAGALEIGKELGKDGLILVNLSGRGDKDMDTAARY 402          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_HELPJ (Tryptophan synthase beta chain OS=Helicobacter pylori J99 GN=trpB PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.417e-66
Identity = 119/222 (53.60%), Postives = 162/222 (72.97%), Query Frame = -1
Query:  138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803
            K+A +EA+R+W  + + ++YL GT  GPHP P MV+ FQ +IG E + Q +EK    PD ++ACVG GSNA+G+F  F+ND++V+LIGVE AG GL++ KH ATL KG VG+ HG  +YLLQD+EGQI  +HS+  GL+YPGVGPE S+L++ GRA + +A+D EA++A++ LC+ EGI PALE+SHALA+  KL         +VVN SG GDKD+ TV N
Sbjct:  165 KDAVNEALRDWASSYKDTHYLLGTSAGPHPYPTMVKTFQKMIGDEVKSQILEKENRLPDYVIACVGGGSNAIGIFSAFLNDKEVKLIGVEPAGLGLETNKHGATLNKGRVGILHGNKTYLLQDDEGQIAESHSISAGLDYPGVGPEHSYLKEIGRAVYESASDIEALEAFRLLCQKEGIIPALESSHALAYALKLAQKCAQEKIIVVNLSGRGDKDLSTVYN 386          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_CLONN (Tryptophan synthase beta chain OS=Clostridium novyi (strain NT) GN=trpB PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.417e-66
Identity = 115/227 (50.66%), Postives = 162/227 (71.37%), Query Frame = -1
Query:  135 DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 815
            +G  K+A  EAI+ WV + + ++Y+ G+ VGPHP P MVREFQ IIG+ET+ Q +   G  PD L+ACVG GSNA+GLF+ FI DE++ +IGVEA G G+++G+H A  A G VGV HG  + +++D+ G +   +S+  GL+YPGVGPE ++L D GRA++ + TD+EAV+A++ LC  EGI PALE+SHA+A+  KL P +     +VVN SG GDKDV+T+  Y
Sbjct:  160 NGTLKDAVDEAIKQWVKSSDDTFYVLGSAVGPHPYPTMVREFQKIIGEETKDQILRMEGRLPDTLIACVGGGSNAIGLFYPFIKDENIEIIGVEAGGKGVETGEHGAAFADGRVGVIHGMKTVIMEDDNGNVKEAYSISAGLDYPGVGPEHAYLNDIGRAKYVSITDEEAVEAFKYLCANEGIIPALESSHAIAYTMKLAPNMDKDKIIVVNLSGRGDKDVETISEY 386          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_RHOPT (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris (strain TIE-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.157e-66
Identity = 123/223 (55.16%), Postives = 160/223 (71.75%), Query Frame = -1
Query:  135 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 803
            K+A +EA+R+WV N+  ++Y  GTV GPHP P+MVR+FQ++IG+E R+Q M+  G  PD L+AC+G GSNA+GLFH F++D  V + GVEAAG GLD   HAA++A G+ GV HG  +YLL D +GQI   HS+  GL+YPGVGPE S+L D GR  F +ATD EA+ A++  CRLEGI PALE SHALA +  L P LP    +VVN SG GDKD+ +V  +
Sbjct:  178 KDAMNEALRDWVTNVHDTFYCIGTVAGPHPYPMMVRDFQAVIGQEVREQIMQAEGRLPDSLVACIGGGSNAMGLFHPFLDDPGVAIYGVEAAGHGLDK-LHAASIAGGKPGVLHGNRTYLLMDADGQIEEAHSISAGLDYPGVGPEHSWLHDVGRVNFLSATDTEALDAFKLCCRLEGIIPALEPSHALAKVADLAPKLPKDHLMVVNMSGRGDKDLASVAEH 399          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_RHOPA (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris GN=trpB PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.157e-66
Identity = 123/223 (55.16%), Postives = 160/223 (71.75%), Query Frame = -1
Query:  135 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 803
            K+A +EA+R+WV N+  ++Y  GTV GPHP P+MVR+FQ++IG+E R+Q M+  G  PD L+AC+G GSNA+GLFH F++D  V + GVEAAG GLD   HAA++A G+ GV HG  +YLL D +GQI   HS+  GL+YPGVGPE S+L D GR  F +ATD EA+ A++  CRLEGI PALE SHALA +  L P LP    +VVN SG GDKD+ +V  +
Sbjct:  178 KDAMNEALRDWVTNVHDTFYCIGTVAGPHPYPMMVRDFQAVIGQEVREQIMQAEGRLPDSLVACIGGGSNAMGLFHPFLDDPGVAIYGVEAAGHGLDK-LHAASIAGGKPGVLHGNRTYLLMDADGQIEEAHSISAGLDYPGVGPEHSWLHDVGRVNFLSATDTEALDAFKLCCRLEGIIPALEPSHALAKVADLAPKLPKDHLMVVNMSGRGDKDLASVAEH 399          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PARDP (Tryptophan synthase beta chain OS=Paracoccus denitrificans (strain Pd 1222) GN=trpB PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.157e-66
Identity = 125/229 (54.59%), Postives = 166/229 (72.49%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWG-GK-PDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSG-KHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G  K+A ++A+R+WV N+  ++Y  GTV GPHP P MVR+FQ IIG+ETR+Q  E+ G G+ PD ++A +G GSNA+GLFH F+++  VR+IGVEA G G+D   +H A+L  G  GV HG  +YLLQD EGQIL  HS+  GL+YPG+GPE ++L++ GRAE+ + TD EA+ A+Q LCRLEGI PALE SHALA + K+ P LP    +VVN SG GDKD+ TV  +
Sbjct:  175 GTLKDAMNDALRDWVTNVRDTFYCIGTVAGPHPYPAMVRDFQCIIGRETRRQLAEQEGEGRLPDSVVAAIGGGSNAMGLFHPFLDEPSVRIIGVEAGGKGVDERMQHCASLTGGRPGVLHGNRTYLLQDGEGQILEGHSISAGLDYPGIGPEHAWLKEQGRAEYVSVTDDEALAAFQTLCRLEGIIPALEPSHALAHVVKIAPDLPRDHIMVVNLSGRGDKDIFTVAKH 403          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_NOVAD (Tryptophan synthase beta chain OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=trpB PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.157e-66
Identity = 115/226 (50.88%), Postives = 164/226 (72.57%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G  K+A +EA+R+WV N+  ++Y+ GT  GPHP P +VR+FQS+IGKE R Q + + G  PD+L+A +G GSNA+GLFH F++D  VR++GVEAAG GLD  +HAA+LA G  G+ HG  +YLLQDE+GQI   HS+  GL+YPG+GPE ++L++ GR ++ + TD EA+ A+Q LCR EGI PALE +HA+A ++K+ PT+     ++ N  G GDKD+ +V  +
Sbjct:  175 GTLKDAMNEALRDWVANVHNTFYIIGTAAGPHPYPELVRDFQSVIGKEARAQMLSRTGRLPDLLVAAIGGGSNAIGLFHPFLDDPSVRMLGVEAAGHGLDK-EHAASLAGGRPGILHGNKTYLLQDEDGQITEGHSISAGLDYPGIGPEHAWLKEIGRVDYTSVTDTEALDAFQLLCRTEGIIPALEPAHAIAAVKKVAPTMGKDEIILANLCGRGDKDIFSVAEH 399          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_BACC1 (Tryptophan synthase beta chain OS=Bacillus cereus (strain ATCC 10987) GN=trpB PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.157e-66
Identity = 119/229 (51.97%), Postives = 167/229 (72.93%), Query Frame = -1
Query:  135 AVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 821
            A  G  K+A +EA+R WV ++  ++Y+ G+V+GPHP P +VR+FQS+IGKET+KQ     G  P+ ++AC+G GSNA+G+F+ F++DE+V L GVEAAG G+ + +HAATL KG VGV HG+M YLLQ+EEGQI   HS+  GL+YPGVGPE S L+D GR  +++ TD EA++A+Q L + EGI PALE+SHA+A+  KL   +     +V+  SG GDKDV+++  Y
Sbjct:  165 AGSGTLKDAVNEALRYWVSHVHDTHYIMGSVLGPHPFPQIVRDFQSVIGKETKKQYEALEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEQHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAAQMKKDEGLVICLSGRGDKDVESIKRY 393          
The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
TRPB_CLOB81.417e-6654.26Tryptophan synthase beta chain OS=Clostridium beij... [more]
TRPB_SULSY1.851e-6652.25Tryptophan synthase beta chain OS=Sulfurihydrogeni... [more]
TRPB_STRAW1.851e-6653.36Tryptophan synthase beta chain OS=Streptomyces ave... [more]
TRPB_HELPJ2.417e-6653.60Tryptophan synthase beta chain OS=Helicobacter pyl... [more]
TRPB_CLONN2.417e-6650.66Tryptophan synthase beta chain OS=Clostridium novy... [more]
TRPB_RHOPT3.157e-6655.16Tryptophan synthase beta chain OS=Rhodopseudomonas... [more]
TRPB_RHOPA3.157e-6655.16Tryptophan synthase beta chain OS=Rhodopseudomonas... [more]
TRPB_PARDP3.157e-6654.59Tryptophan synthase beta chain OS=Paracoccus denit... [more]
TRPB_NOVAD3.157e-6650.88Tryptophan synthase beta chain OS=Novosphingobium ... [more]
TRPB_BACC13.157e-6651.97Tryptophan synthase beta chain OS=Bacillus cereus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTGAGAAAAATAGGTCTTAAATTAATAGATTTCTCGGGTTGCTGCT
AAATTGACGGGAACCCTTAAATATTGTGGTCACCACTTCTTCGATCCATT
ACAATTTCTACGTCGATAATTATTGATTGTATCTGTAATTGACGACCGTG
TCGACGTCCTTATCCCCACCTCCACTACAGTTGACAACAACTTTTGCACC
ATTAGGTAAAGTAGGGCAAAGTTTCTCTAGAAATGCTAATGCATGAGATG
CCTCAAGGGCCGGAAATATGCCTTCTAATCTGCACAGCCGTTGATATGCT
TGGACAGCTTCTTGGTCAGTCGCAGTGTAGAACTCCGCACGCCCAGTGTC
CCTAAGAAAGCTTATCTCCGGGCCAACTCCTGGATACTCTAGCCCTACAC
CGACAGAATGAGTCCCCAAGATTTGGCCTTCTTCATCTTGCAACAAGTAG
CTCATGGCTCCATGATAAACACCCACTTCCCCTTTAGCCAGAGTTGCAGC
GTGTTTGCCGCTGTCCAAGCCAAATCCAGCAGCCTCCACTCCAATCAATC
TCACATCTTCATCATTTATGAATTCATGAAACAAACCCAACGCATTTGAT
CCACTGCCCACACAAGCCAGCAATACATCAGGCTTGCCTCCCCATTTTTC
CATTGCTTGTTTTCTCGTTTCTTTGCCTATGATTGATTGAAATTCTCGTA
CCATTATTGGACACGGGTGAGGCCCCACCACCGTACCCGTTAAATAATAG
CTTTTTTCTAAGTTCCCCACCCAATTTCTGATAGCTTCTGAGCTTGCTTC
TTTGAAACATCCATCCACTGC
back to top