CX043276
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PROMP (Tryptophan synthase beta chain OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=trpB PE=3 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 3.044e-77 Identity = 130/222 (58.56%), Postives = 177/222 (79.73%), Query Frame = -1 Query: 138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803 K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F ++IG+E +KQ +E +G PD+LLACVG GSNA+GLFH F+ ++ VRLIGVEAAG G+++ KHAAT+ KG VG+ HG+MS LLQD++GQ+ HS+ GL+YPGVGPE S+L+D GRAE+ + TD EA+ A + + LEGI PALE +HA A+LEKLCPTL ++V+NCSG GDKDV+TV + Sbjct: 188 KDATSEAIRDWVSNVETTHYILGSVAGPHPFPMIVRDFHAVIGEEAKKQCLESFGSLPDILLACVGGGSNAMGLFHPFVKEKSVRLIGVEAAGSGVNTEKHAATITKGSVGILHGSMSLLLQDKDGQVQEAHSISAGLDYPGVGPEHSYLKDIGRAEYGSVTDAEALDALKLVSELEGIIPALETAHAFAWLEKLCPTLDKDTEIVINCSGRGDKDVNTVAS 409
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PROM5 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9515) GN=trpB PE=3 SV=1) HSP 1 Score: 288.115 bits (736), Expect = 3.975e-77 Identity = 130/222 (58.56%), Postives = 176/222 (79.28%), Query Frame = -1 Query: 138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803 K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F ++IG+E +KQ +E +G PD+LLACVG GSNA+GLFH F+ ++ VRLIGVEAAG G+++ KHAAT+ KG VG+ HG+MS LLQD+ GQ+ HS+ GL+YPGVGPE S+L+D GRAE+ + TD EA+ A + + LEGI PALE +HA A+LEKLCPTL ++V+NCSG GDKDV+TV + Sbjct: 189 KDATSEAIRDWVSNVETTHYILGSVAGPHPFPMIVRDFHAVIGEEAKKQCVESFGSLPDILLACVGGGSNAMGLFHPFVKEKSVRLIGVEAAGSGVNTDKHAATITKGSVGILHGSMSLLLQDKNGQVQEAHSISAGLDYPGVGPEHSYLKDIGRAEYGSVTDTEALNALKLVSELEGIIPALETAHAFAWLEKLCPTLEKNTEIVINCSGRGDKDVNTVAS 410
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PROM0 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9301) GN=trpB PE=3 SV=1) HSP 1 Score: 288.115 bits (736), Expect = 3.975e-77 Identity = 132/222 (59.46%), Postives = 174/222 (78.38%), Query Frame = -1 Query: 138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803 K+A+SEAIR+WV N+E ++Y+ G+V GPHP P +VR+F ++IG+ET+KQ +E +G PD+LLACVG GSNA+GLFH F+ + VRLIGVEAAG G+D+ KHAAT+ KG VG+ HG+MS LLQD+ GQ+ HS+ GL+YPGVGPE S L++ GRAE+ + TDQEA+ A + + LEGI PALE SHA A+L+KLCPTL +V+NCSG GDKDV+TV + Sbjct: 189 KDATSEAIRDWVSNVETTHYILGSVAGPHPFPKIVRDFHAVIGEETKKQCLESFGSFPDILLACVGGGSNAMGLFHPFVKETSVRLIGVEAAGSGVDTDKHAATITKGSVGILHGSMSLLLQDDNGQVQEAHSISAGLDYPGVGPEHSHLKEIGRAEYGSVTDQEALDALKLVSELEGIIPALETSHAFAWLDKLCPTLEKDTHIVINCSGRGDKDVNTVAS 410
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SYNSC (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9605) GN=trpB PE=3 SV=1) HSP 1 Score: 287.73 bits (735), Expect = 5.192e-77 Identity = 132/220 (60.00%), Postives = 176/220 (80.00%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F ++IG+E+++Q E +G PDVL+ACVG GSNA+GLFH F+ D VRLIGVEAAG G+ SG+HAAT+ +G GV HGAMS LLQD +GQ++ HS+ GL+YPGVGPE S+LR+ GRAE+ TDQ+A+ A + + LEGI PALE +HA A+LE+LCPTL +G +VV+NCSG GDKDV+TV Sbjct: 191 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGEESKQQCQEAFGRLPDVLMACVGGGSNAMGLFHPFVQDMSVRLIGVEAAGDGVASGRHAATITEGRAGVLHGAMSLLLQDGDGQVMEAHSISAGLDYPGVGPEHSYLREIGRAEYAAVTDQQALDALRLVSELEGIIPALETAHAFAWLEQLCPTLADGTEVVINCSGRGDKDVNTV 410
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PROMM (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9313) GN=trpB PE=3 SV=1) HSP 1 Score: 286.96 bits (733), Expect = 8.856e-77 Identity = 134/227 (59.03%), Postives = 176/227 (77.53%), Query Frame = -1 Query: 123 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRYNQ 803 K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F ++IG+E R+Q E +G PDVLLACVG GSNA+GLFH F+ D VR+IGVEAAG G+++G+HAAT+ +G VGV HGAMS LLQD+EGQ+ HS+ GL+YPGVGPE S+L + GRAE+ +DQ+A+ A + + LEGI PALE +HA A+LE LCPTL G +VV+NCSG GDKDV+TV NQ Sbjct: 209 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGQEARQQCAEAFGRLPDVLLACVGGGSNAMGLFHPFVQDRSVRMIGVEAAGDGVETGRHAATITEGRVGVLHGAMSLLLQDDEGQVQEAHSISAGLDYPGVGPEHSYLCEIGRAEYAAVSDQQALDALRLVSELEGIIPALETAHAFAWLETLCPTLAAGTEVVINCSGRGDKDVNTVAEKLGNQ 435
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPX (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH8102) GN=trpB PE=3 SV=1) HSP 1 Score: 286.189 bits (731), Expect = 1.511e-76 Identity = 132/220 (60.00%), Postives = 176/220 (80.00%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F ++IG+E R+Q E +G PDVL+ACVG GSNA+GLFH F+ +VRLIGVEAAG G+ +G+HAAT+ +G GV HGAMS LLQD +GQ+ HS+ GL+YPGVGPE S+LR+ GRAE+ TDQ+A+ A + + LEGI PALE +HA A+LE+LCPTLP+G++VV+NCSG GDKDV+TV Sbjct: 191 KDATSEAIRDWVTNVESTHYILGSVAGPHPYPMLVRDFHAVIGQEARQQCREAFGRLPDVLMACVGGGSNAMGLFHPFVECTNVRLIGVEAAGDGVATGRHAATITEGRAGVLHGAMSLLLQDSDGQVQEAHSISAGLDYPGVGPEHSYLREIGRAEYGAVTDQQALGALRLVSELEGIIPALETAHAFAWLEQLCPTLPDGSEVVINCSGRGDKDVNTV 410
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PROM4 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9211) GN=trpB PE=3 SV=1) HSP 1 Score: 282.337 bits (721), Expect = 2.181e-75 Identity = 129/220 (58.64%), Postives = 174/220 (79.09%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F S+IG+ET++Q E +G PDVLLACVG GSNA+GLFH FI D V++IGVEAAG G+++ +HAAT+ +G VGV HGAMS LLQD +GQ+ HS+ GL+YPGVGPE S+L + GRAE+ TD+EA+ A + + +LEGI PALE +HA A+L+ LCP+L G ++V+NCSG GDKDV+TV Sbjct: 189 KDATSEAIRDWVTNVESTHYILGSVAGPHPYPMLVRDFHSVIGEETKQQCKEAFGRSPDVLLACVGGGSNAMGLFHSFIEDLSVKMIGVEAAGDGVNTKRHAATITQGSVGVLHGAMSLLLQDSDGQVQEAHSISAGLDYPGVGPEHSYLNEIGRAEYVAVTDKEALNALELVSKLEGIIPALETAHAFAWLDTLCPSLAPGTEIVINCSGRGDKDVNTV 408
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SYNS9 (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9902) GN=trpB PE=3 SV=1) HSP 1 Score: 281.952 bits (720), Expect = 2.849e-75 Identity = 128/220 (58.18%), Postives = 173/220 (78.64%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F ++IG+E ++Q E +G PDVL+ACVG GSNA+GLFH F+ D VRLIGVEAAG G+++ +HAAT+ +G GV HGAMS LLQD +GQ+ HS+ GL+YPGVGPE S+L++ GRAE+ TD++A+ + + LEGI PALE +HA A+LE+LCPTLP G +VV+NCSG GDKDV+TV Sbjct: 191 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGQEAKQQCEEAFGRLPDVLMACVGGGSNAMGLFHPFVQDTSVRLIGVEAAGDGVNTPRHAATITEGRAGVLHGAMSLLLQDSDGQVQEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDEQALDGLRLVSELEGIIPALETAHAFAWLEQLCPTLPQGCEVVINCSGRGDKDVNTV 410
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_GLOVI (Tryptophan synthase beta chain OS=Gloeobacter violaceus GN=trpB PE=3 SV=1) HSP 1 Score: 280.411 bits (716), Expect = 8.289e-75 Identity = 130/223 (58.30%), Postives = 172/223 (77.13%), Query Frame = -1 Query: 144 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 812 G K+A+SEAIR+WV ++E ++Y+ G+ GPHP P+MVREFQ++IG+ETR Q +E+ G PDVL+ACVG GSNA+GLFH+F+++ VRL+G+EAAG G+++GKHAATL G GV HGAMSY+LQDE+GQ+ HS+ GL+YPGVGPE S+L+D GRAE+Y+ TD EA+ A +C EGI PALE +HA A+L L L + VV+NCSG GDKD+ TV Sbjct: 182 GTLKDATSEAIRDWVTHVETTHYILGSAAGPHPYPLMVREFQAVIGRETRVQCLERLGRLPDVLIACVGGGSNAIGLFHDFLDERAVRLVGIEAAGEGIETGKHAATLTAGRAGVLHGAMSYVLQDEQGQVQEAHSLSAGLDYPGVGPEHSYLKDIGRAEYYSVTDSEALAALSLVCSTEGIIPALETAHAFAYLGILASQLHSEQIVVLNCSGRGDKDMGTV 404
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_NITEU (Tryptophan synthase beta chain OS=Nitrosomonas europaea GN=trpB PE=3 SV=1) HSP 1 Score: 276.174 bits (705), Expect = 1.563e-73 Identity = 129/220 (58.64%), Postives = 170/220 (77.27%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A +EA+R+WV N+ +YY+ GTV GPHP P+MVR+FQ+IIG E R+Q E++G +PD L+ACVG GSNA+GLF+ +I++E+VR+IGVEAAG G+D+ +HAATL G GV HG +YL+QDE GQI+ THS+ GL+YPGVGPE ++L+D GRAE+ TD EA+ A+ LCR EGI PALE+SHALA+ KL PTL ++VN SG GDKD+ TV Sbjct: 170 KDALNEAMRDWVTNVSNTYYIIGTVAGPHPYPMMVRDFQAIIGNEARQQMREEYGRQPDALIACVGGGSNAIGLFYPYIDEENVRMIGVEAAGKGIDTHEHAATLVTGRPGVLHGNRTYLIQDENGQIIETHSISAGLDYPGVGPEHAWLKDCGRAEYVAVTDDEALAAFHALCRFEGIIPALESSHALAYAAKLAPTLNKDQLLLVNLSGRGDKDMATV 389 The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 441
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bpback to top |