CX043276

Overview
NameCX043276
Unique NameCX043276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2462 contig Csv1_Contig2462:113..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PROMP (Tryptophan synthase beta chain OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=trpB PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 3.044e-77
Identity = 130/222 (58.56%), Postives = 177/222 (79.73%), Query Frame = -1
Query:  138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803
            K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F ++IG+E +KQ +E +G  PD+LLACVG GSNA+GLFH F+ ++ VRLIGVEAAG G+++ KHAAT+ KG VG+ HG+MS LLQD++GQ+   HS+  GL+YPGVGPE S+L+D GRAE+ + TD EA+ A + +  LEGI PALE +HA A+LEKLCPTL    ++V+NCSG GDKDV+TV +
Sbjct:  188 KDATSEAIRDWVSNVETTHYILGSVAGPHPFPMIVRDFHAVIGEEAKKQCLESFGSLPDILLACVGGGSNAMGLFHPFVKEKSVRLIGVEAAGSGVNTEKHAATITKGSVGILHGSMSLLLQDKDGQVQEAHSISAGLDYPGVGPEHSYLKDIGRAEYGSVTDAEALDALKLVSELEGIIPALETAHAFAWLEKLCPTLDKDTEIVINCSGRGDKDVNTVAS 409          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PROM5 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9515) GN=trpB PE=3 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.975e-77
Identity = 130/222 (58.56%), Postives = 176/222 (79.28%), Query Frame = -1
Query:  138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803
            K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F ++IG+E +KQ +E +G  PD+LLACVG GSNA+GLFH F+ ++ VRLIGVEAAG G+++ KHAAT+ KG VG+ HG+MS LLQD+ GQ+   HS+  GL+YPGVGPE S+L+D GRAE+ + TD EA+ A + +  LEGI PALE +HA A+LEKLCPTL    ++V+NCSG GDKDV+TV +
Sbjct:  189 KDATSEAIRDWVSNVETTHYILGSVAGPHPFPMIVRDFHAVIGEEAKKQCVESFGSLPDILLACVGGGSNAMGLFHPFVKEKSVRLIGVEAAGSGVNTDKHAATITKGSVGILHGSMSLLLQDKNGQVQEAHSISAGLDYPGVGPEHSYLKDIGRAEYGSVTDTEALNALKLVSELEGIIPALETAHAFAWLEKLCPTLEKNTEIVINCSGRGDKDVNTVAS 410          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PROM0 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9301) GN=trpB PE=3 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.975e-77
Identity = 132/222 (59.46%), Postives = 174/222 (78.38%), Query Frame = -1
Query:  138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803
            K+A+SEAIR+WV N+E ++Y+ G+V GPHP P +VR+F ++IG+ET+KQ +E +G  PD+LLACVG GSNA+GLFH F+ +  VRLIGVEAAG G+D+ KHAAT+ KG VG+ HG+MS LLQD+ GQ+   HS+  GL+YPGVGPE S L++ GRAE+ + TDQEA+ A + +  LEGI PALE SHA A+L+KLCPTL     +V+NCSG GDKDV+TV +
Sbjct:  189 KDATSEAIRDWVSNVETTHYILGSVAGPHPFPKIVRDFHAVIGEETKKQCLESFGSFPDILLACVGGGSNAMGLFHPFVKETSVRLIGVEAAGSGVDTDKHAATITKGSVGILHGSMSLLLQDDNGQVQEAHSISAGLDYPGVGPEHSHLKEIGRAEYGSVTDQEALDALKLVSELEGIIPALETSHAFAWLDKLCPTLEKDTHIVINCSGRGDKDVNTVAS 410          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SYNSC (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9605) GN=trpB PE=3 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 5.192e-77
Identity = 132/220 (60.00%), Postives = 176/220 (80.00%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F ++IG+E+++Q  E +G  PDVL+ACVG GSNA+GLFH F+ D  VRLIGVEAAG G+ SG+HAAT+ +G  GV HGAMS LLQD +GQ++  HS+  GL+YPGVGPE S+LR+ GRAE+   TDQ+A+ A + +  LEGI PALE +HA A+LE+LCPTL +G +VV+NCSG GDKDV+TV
Sbjct:  191 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGEESKQQCQEAFGRLPDVLMACVGGGSNAMGLFHPFVQDMSVRLIGVEAAGDGVASGRHAATITEGRAGVLHGAMSLLLQDGDGQVMEAHSISAGLDYPGVGPEHSYLREIGRAEYAAVTDQQALDALRLVSELEGIIPALETAHAFAWLEQLCPTLADGTEVVINCSGRGDKDVNTV 410          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PROMM (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9313) GN=trpB PE=3 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 8.856e-77
Identity = 134/227 (59.03%), Postives = 176/227 (77.53%), Query Frame = -1
Query:  123 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRYNQ 803
            K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F ++IG+E R+Q  E +G  PDVLLACVG GSNA+GLFH F+ D  VR+IGVEAAG G+++G+HAAT+ +G VGV HGAMS LLQD+EGQ+   HS+  GL+YPGVGPE S+L + GRAE+   +DQ+A+ A + +  LEGI PALE +HA A+LE LCPTL  G +VV+NCSG GDKDV+TV     NQ
Sbjct:  209 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGQEARQQCAEAFGRLPDVLLACVGGGSNAMGLFHPFVQDRSVRMIGVEAAGDGVETGRHAATITEGRVGVLHGAMSLLLQDDEGQVQEAHSISAGLDYPGVGPEHSYLCEIGRAEYAAVSDQQALDALRLVSELEGIIPALETAHAFAWLETLCPTLAAGTEVVINCSGRGDKDVNTVAEKLGNQ 435          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPX (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH8102) GN=trpB PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.511e-76
Identity = 132/220 (60.00%), Postives = 176/220 (80.00%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F ++IG+E R+Q  E +G  PDVL+ACVG GSNA+GLFH F+   +VRLIGVEAAG G+ +G+HAAT+ +G  GV HGAMS LLQD +GQ+   HS+  GL+YPGVGPE S+LR+ GRAE+   TDQ+A+ A + +  LEGI PALE +HA A+LE+LCPTLP+G++VV+NCSG GDKDV+TV
Sbjct:  191 KDATSEAIRDWVTNVESTHYILGSVAGPHPYPMLVRDFHAVIGQEARQQCREAFGRLPDVLMACVGGGSNAMGLFHPFVECTNVRLIGVEAAGDGVATGRHAATITEGRAGVLHGAMSLLLQDSDGQVQEAHSISAGLDYPGVGPEHSYLREIGRAEYGAVTDQQALGALRLVSELEGIIPALETAHAFAWLEQLCPTLPDGSEVVINCSGRGDKDVNTV 410          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PROM4 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9211) GN=trpB PE=3 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.181e-75
Identity = 129/220 (58.64%), Postives = 174/220 (79.09%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F S+IG+ET++Q  E +G  PDVLLACVG GSNA+GLFH FI D  V++IGVEAAG G+++ +HAAT+ +G VGV HGAMS LLQD +GQ+   HS+  GL+YPGVGPE S+L + GRAE+   TD+EA+ A + + +LEGI PALE +HA A+L+ LCP+L  G ++V+NCSG GDKDV+TV
Sbjct:  189 KDATSEAIRDWVTNVESTHYILGSVAGPHPYPMLVRDFHSVIGEETKQQCKEAFGRSPDVLLACVGGGSNAMGLFHSFIEDLSVKMIGVEAAGDGVNTKRHAATITQGSVGVLHGAMSLLLQDSDGQVQEAHSISAGLDYPGVGPEHSYLNEIGRAEYVAVTDKEALNALELVSKLEGIIPALETAHAFAWLDTLCPSLAPGTEIVINCSGRGDKDVNTV 408          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SYNS9 (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9902) GN=trpB PE=3 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.849e-75
Identity = 128/220 (58.18%), Postives = 173/220 (78.64%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VR+F ++IG+E ++Q  E +G  PDVL+ACVG GSNA+GLFH F+ D  VRLIGVEAAG G+++ +HAAT+ +G  GV HGAMS LLQD +GQ+   HS+  GL+YPGVGPE S+L++ GRAE+   TD++A+   + +  LEGI PALE +HA A+LE+LCPTLP G +VV+NCSG GDKDV+TV
Sbjct:  191 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVRDFHAVIGQEAKQQCEEAFGRLPDVLMACVGGGSNAMGLFHPFVQDTSVRLIGVEAAGDGVNTPRHAATITEGRAGVLHGAMSLLLQDSDGQVQEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDEQALDGLRLVSELEGIIPALETAHAFAWLEQLCPTLPQGCEVVINCSGRGDKDVNTV 410          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_GLOVI (Tryptophan synthase beta chain OS=Gloeobacter violaceus GN=trpB PE=3 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 8.289e-75
Identity = 130/223 (58.30%), Postives = 172/223 (77.13%), Query Frame = -1
Query:  144 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 812
            G  K+A+SEAIR+WV ++E ++Y+ G+  GPHP P+MVREFQ++IG+ETR Q +E+ G  PDVL+ACVG GSNA+GLFH+F+++  VRL+G+EAAG G+++GKHAATL  G  GV HGAMSY+LQDE+GQ+   HS+  GL+YPGVGPE S+L+D GRAE+Y+ TD EA+ A   +C  EGI PALE +HA A+L  L   L +   VV+NCSG GDKD+ TV
Sbjct:  182 GTLKDATSEAIRDWVTHVETTHYILGSAAGPHPYPLMVREFQAVIGRETRVQCLERLGRLPDVLIACVGGGSNAIGLFHDFLDERAVRLVGIEAAGEGIETGKHAATLTAGRAGVLHGAMSYVLQDEQGQVQEAHSLSAGLDYPGVGPEHSYLKDIGRAEYYSVTDSEALAALSLVCSTEGIIPALETAHAFAYLGILASQLHSEQIVVLNCSGRGDKDMGTV 404          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_NITEU (Tryptophan synthase beta chain OS=Nitrosomonas europaea GN=trpB PE=3 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.563e-73
Identity = 129/220 (58.64%), Postives = 170/220 (77.27%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A +EA+R+WV N+  +YY+ GTV GPHP P+MVR+FQ+IIG E R+Q  E++G +PD L+ACVG GSNA+GLF+ +I++E+VR+IGVEAAG G+D+ +HAATL  G  GV HG  +YL+QDE GQI+ THS+  GL+YPGVGPE ++L+D GRAE+   TD EA+ A+  LCR EGI PALE+SHALA+  KL PTL     ++VN SG GDKD+ TV
Sbjct:  170 KDALNEAMRDWVTNVSNTYYIIGTVAGPHPYPMMVRDFQAIIGNEARQQMREEYGRQPDALIACVGGGSNAIGLFYPYIDEENVRMIGVEAAGKGIDTHEHAATLVTGRPGVLHGNRTYLIQDENGQIIETHSISAGLDYPGVGPEHAWLKDCGRAEYVAVTDDEALAAFHALCRFEGIIPALESSHALAYAAKLAPTLNKDQLLLVNLSGRGDKDMATV 389          
The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
TRPB_PROMP3.044e-7758.56Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROM53.975e-7758.56Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROM03.975e-7759.46Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_SYNSC5.192e-7760.00Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_PROMM8.856e-7759.03Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_SYNPX1.511e-7660.00Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_PROM42.181e-7558.64Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_SYNS92.849e-7558.18Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_GLOVI8.289e-7558.30Tryptophan synthase beta chain OS=Gloeobacter viol... [more]
TRPB_NITEU1.563e-7358.64Tryptophan synthase beta chain OS=Nitrosomonas eur... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTGAGAAAAATAGGTCTTAAATTAATAGATTTCTCGGGTTGCTGCT
AAATTGACGGGAACCCTTAAATATTGTGGTCACCACTTCTTCGATCCATT
ACAATTTCTACGTCGATAATTATTGATTGTATCTGTAATTGACGACCGTG
TCGACGTCCTTATCCCCACCTCCACTACAGTTGACAACAACTTTTGCACC
ATTAGGTAAAGTAGGGCAAAGTTTCTCTAGAAATGCTAATGCATGAGATG
CCTCAAGGGCCGGAAATATGCCTTCTAATCTGCACAGCCGTTGATATGCT
TGGACAGCTTCTTGGTCAGTCGCAGTGTAGAACTCCGCACGCCCAGTGTC
CCTAAGAAAGCTTATCTCCGGGCCAACTCCTGGATACTCTAGCCCTACAC
CGACAGAATGAGTCCCCAAGATTTGGCCTTCTTCATCTTGCAACAAGTAG
CTCATGGCTCCATGATAAACACCCACTTCCCCTTTAGCCAGAGTTGCAGC
GTGTTTGCCGCTGTCCAAGCCAAATCCAGCAGCCTCCACTCCAATCAATC
TCACATCTTCATCATTTATGAATTCATGAAACAAACCCAACGCATTTGAT
CCACTGCCCACACAAGCCAGCAATACATCAGGCTTGCCTCCCCATTTTTC
CATTGCTTGTTTTCTCGTTTCTTTGCCTATGATTGATTGAAATTCTCGTA
CCATTATTGGACACGGGTGAGGCCCCACCACCGTACCCGTTAAATAATAG
CTTTTTTCTAAGTTCCCCACCCAATTTCTGATAGCTTCTGAGCTTGCTTC
TTTGAAACATCCATCCACTGC
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