CX043276

Overview
NameCX043276
Unique NameCX043276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_STAAT (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=trpB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.191e-59
Identity = 107/226 (47.35%), Postives = 155/226 (68.58%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G   +A ++A++ WV +++ ++YL G+ +GP P P +VR+FQS+IGKE + Q ++K G  PD ++AC+G GSNA+G F+ FI D DV L GVEAAG G D+ KHA  + KG  GV HG   YL+QDE+GQ+   HS+  GL+YPG+GPE S+  D GR  F  A+D +A+ A     + EGI PA+E++HAL+++E+L PT+     +VV  SG GDKD++T+  Y
Sbjct:  171 GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKD-DVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQVQLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHALSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQY 395          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_STAAS (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain MSSA476) GN=trpB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.191e-59
Identity = 107/226 (47.35%), Postives = 155/226 (68.58%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G   +A ++A++ WV +++ ++YL G+ +GP P P +VR+FQS+IGKE + Q ++K G  PD ++AC+G GSNA+G F+ FI D DV L GVEAAG G D+ KHA  + KG  GV HG   YL+QDE+GQ+   HS+  GL+YPG+GPE S+  D GR  F  A+D +A+ A     + EGI PA+E++HAL+++E+L PT+     +VV  SG GDKD++T+  Y
Sbjct:  171 GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKD-DVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQVQLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHALSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQY 395          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_STAAE (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain Newman) GN=trpB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.191e-59
Identity = 107/226 (47.35%), Postives = 155/226 (68.58%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G   +A ++A++ WV +++ ++YL G+ +GP P P +VR+FQS+IGKE + Q ++K G  PD ++AC+G GSNA+G F+ FI D DV L GVEAAG G D+ KHA  + KG  GV HG   YL+QDE+GQ+   HS+  GL+YPG+GPE S+  D GR  F  A+D +A+ A     + EGI PA+E++HAL+++E+L PT+     +VV  SG GDKD++T+  Y
Sbjct:  171 GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKD-DVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQVQLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHALSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQY 395          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_STAAC (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain COL) GN=trpB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.191e-59
Identity = 107/226 (47.35%), Postives = 155/226 (68.58%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G   +A ++A++ WV +++ ++YL G+ +GP P P +VR+FQS+IGKE + Q ++K G  PD ++AC+G GSNA+G F+ FI D DV L GVEAAG G D+ KHA  + KG  GV HG   YL+QDE+GQ+   HS+  GL+YPG+GPE S+  D GR  F  A+D +A+ A     + EGI PA+E++HAL+++E+L PT+     +VV  SG GDKD++T+  Y
Sbjct:  171 GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKD-DVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQVQLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHALSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQY 395          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_STAA8 (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain NCTC 8325) GN=trpB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.191e-59
Identity = 107/226 (47.35%), Postives = 155/226 (68.58%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G   +A ++A++ WV +++ ++YL G+ +GP P P +VR+FQS+IGKE + Q ++K G  PD ++AC+G GSNA+G F+ FI D DV L GVEAAG G D+ KHA  + KG  GV HG   YL+QDE+GQ+   HS+  GL+YPG+GPE S+  D GR  F  A+D +A+ A     + EGI PA+E++HAL+++E+L PT+     +VV  SG GDKD++T+  Y
Sbjct:  171 GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKD-DVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQVQLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHALSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQY 395          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_STAA3 (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain USA300) GN=trpB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.191e-59
Identity = 107/226 (47.35%), Postives = 155/226 (68.58%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G   +A ++A++ WV +++ ++YL G+ +GP P P +VR+FQS+IGKE + Q ++K G  PD ++AC+G GSNA+G F+ FI D DV L GVEAAG G D+ KHA  + KG  GV HG   YL+QDE+GQ+   HS+  GL+YPG+GPE S+  D GR  F  A+D +A+ A     + EGI PA+E++HAL+++E+L PT+     +VV  SG GDKD++T+  Y
Sbjct:  171 GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKD-DVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQVQLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHALSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQY 395          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SHEAM (Tryptophan synthase beta chain OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=trpB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.191e-59
Identity = 109/220 (49.55%), Postives = 156/220 (70.91%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A +EA+R+W G+ ++++YL GT  GPHP P +VREFQ +IG ET+ Q +EK G  PD ++ACVG GSNA+G+F +FI++  V+LIGVE AG G+D+  H A L  G+ G++ G  + L+QD  GQI  ++S+  GL++P VGP+ ++L  TGRA + +ATD EA++A+Q L R EGI PALE++HALA+  +L         +VVN SG GDKD+ TV
Sbjct:  168 KDACNEAMRDWSGSYDRAHYLLGTAAGPHPFPTIVREFQRMIGAETKAQMLEKEGRLPDAVIACVGGGSNAIGMFADFIDEPSVKLIGVEPAGKGIDTPMHGAPLKHGKTGIFFGMKAPLMQDAHGQIEESYSISAGLDFPSVGPQHAYLNATGRATYESATDDEALEAFQLLARSEGIIPALESAHALAYALRLAKDATEEQIIVVNLSGRGDKDIFTV 387          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_EDWI9 (Tryptophan synthase beta chain OS=Edwardsiella ictaluri (strain 93-146) GN=trpB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.191e-59
Identity = 112/221 (50.68%), Postives = 157/221 (71.04%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTV 803
            K+A +EA+R+W  N ++++YL GT  GPHP P +VREFQ +IG ETR+Q ++  G  PD +LACVG GSNA+G+F +FI+D  V+LIGVE AG G+++G+H A L+ G VG+Y G  S ++Q  EGQI  ++S+  GL++P VGP+ + L   GRA++ +ATD EA+ A+ +L R EGI PALE++HALA   KL    P   + +VVN SG GDKD+ TV
Sbjct:  166 KDACNEALRDWSANYDQAHYLLGTAAGPHPYPTIVREFQRMIGAETRRQILQAEGRLPDAVLACVGGGSNAIGMFADFIDDASVQLIGVEPAGLGIETGQHGAPLSHGRVGIYFGMRSPMMQTAEGQIEESYSLSAGLDFPSVGPQHAHLNSIGRADYVSATDDEALAAFMQLSRQEGIIPALESAHALAHALKLIHQQPEKEQLLVVNLSGRGDKDIFTV 386          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_BACHD (Tryptophan synthase beta chain OS=Bacillus halodurans GN=trpB PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.191e-59
Identity = 115/223 (51.57%), Postives = 158/223 (70.85%), Query Frame = -1
Query:  135 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 803
            K+A++EAIR WV + + ++YL G+VVGPHP P MVR+FQ IIG E R Q  E  G  P  ++ACVG GSNA+G F+ F+ D DV+LIGVEAAG G+++ +HAAT+ KG VGV HG+M+YLLQD+ GQI   +S+  GL+YPGVGPE ++L  TGR ++   TD+EA+ A ++L   EGI PA+E++HALA   +    L     ++V  SG GDKDV T++ +
Sbjct:  171 KDATNEAIRYWVTHADDTFYLIGSVVGPHPYPQMVRDFQRIIGDEARAQFQEITGTLPTEVIACVGGGSNAIGTFYPFLED-DVKLIGVEAAGKGVETSQHAATITKGRVGVIHGSMTYLLQDDAGQITEPYSISAGLDYPGVGPEHAYLASTGRVKYDAVTDKEALDALKQLSVHEGIIPAVESAHALAKAFERAKQLSQEESILVCLSGRGDKDVHTLMKH 392          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SHEDO (Tryptophan synthase beta chain OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=trpB PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.862e-59
Identity = 110/220 (50.00%), Postives = 155/220 (70.45%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A +EA+R+W  + +K++YL GT  GPHP P +VREFQ +IG+ET++Q +EK G  PD ++ACVG GSNA+G+F +FI++  V LIGVE AG G+D+  H A L  G+ G++ G  + L+QD +GQI  ++SV  GL++P VGP+ + L   GRA + +ATD EA+  +Q+L R EGI PALE++HALA+  KL  T      +VVN SG GDKD+ TV
Sbjct:  168 KDACNEAMRDWSASYDKAHYLLGTAAGPHPFPTIVREFQRMIGEETKQQILEKEGRLPDAVIACVGGGSNAIGMFADFIDEPSVELIGVEPAGKGIDTPMHGAPLKHGKTGIFFGMKAPLMQDRDGQIEESYSVSAGLDFPSVGPQHAHLNAIGRARYESATDDEALAMFQQLARCEGIIPALESAHALAYAVKLAKTATKETILVVNLSGRGDKDIFTV 387          
The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
TRPB_STAAT2.191e-5947.35Tryptophan synthase beta chain OS=Staphylococcus a... [more]
TRPB_STAAS2.191e-5947.35Tryptophan synthase beta chain OS=Staphylococcus a... [more]
TRPB_STAAE2.191e-5947.35Tryptophan synthase beta chain OS=Staphylococcus a... [more]
TRPB_STAAC2.191e-5947.35Tryptophan synthase beta chain OS=Staphylococcus a... [more]
TRPB_STAA82.191e-5947.35Tryptophan synthase beta chain OS=Staphylococcus a... [more]
TRPB_STAA32.191e-5947.35Tryptophan synthase beta chain OS=Staphylococcus a... [more]
TRPB_SHEAM2.191e-5949.55Tryptophan synthase beta chain OS=Shewanella amazo... [more]
TRPB_EDWI92.191e-5950.68Tryptophan synthase beta chain OS=Edwardsiella ict... [more]
TRPB_BACHD2.191e-5951.57Tryptophan synthase beta chain OS=Bacillus halodur... [more]
TRPB_SHEDO2.862e-5950.00Tryptophan synthase beta chain OS=Shewanella denit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTGAGAAAAATAGGTCTTAAATTAATAGATTTCTCGGGTTGCTGCT
AAATTGACGGGAACCCTTAAATATTGTGGTCACCACTTCTTCGATCCATT
ACAATTTCTACGTCGATAATTATTGATTGTATCTGTAATTGACGACCGTG
TCGACGTCCTTATCCCCACCTCCACTACAGTTGACAACAACTTTTGCACC
ATTAGGTAAAGTAGGGCAAAGTTTCTCTAGAAATGCTAATGCATGAGATG
CCTCAAGGGCCGGAAATATGCCTTCTAATCTGCACAGCCGTTGATATGCT
TGGACAGCTTCTTGGTCAGTCGCAGTGTAGAACTCCGCACGCCCAGTGTC
CCTAAGAAAGCTTATCTCCGGGCCAACTCCTGGATACTCTAGCCCTACAC
CGACAGAATGAGTCCCCAAGATTTGGCCTTCTTCATCTTGCAACAAGTAG
CTCATGGCTCCATGATAAACACCCACTTCCCCTTTAGCCAGAGTTGCAGC
GTGTTTGCCGCTGTCCAAGCCAAATCCAGCAGCCTCCACTCCAATCAATC
TCACATCTTCATCATTTATGAATTCATGAAACAAACCCAACGCATTTGAT
CCACTGCCCACACAAGCCAGCAATACATCAGGCTTGCCTCCCCATTTTTC
CATTGCTTGTTTTCTCGTTTCTTTGCCTATGATTGATTGAAATTCTCGTA
CCATTATTGGACACGGGTGAGGCCCCACCACCGTACCCGTTAAATAATAG
CTTTTTTCTAAGTTCCCCACCCAATTTCTGATAGCTTCTGAGCTTGCTTC
TTTGAAACATCCATCCACTGC
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