CX043276
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_STAAT (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=trpB PE=3 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 2.191e-59 Identity = 107/226 (47.35%), Postives = 155/226 (68.58%), Query Frame = -1 Query: 135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812 G +A ++A++ WV +++ ++YL G+ +GP P P +VR+FQS+IGKE + Q ++K G PD ++AC+G GSNA+G F+ FI D DV L GVEAAG G D+ KHA + KG GV HG YL+QDE+GQ+ HS+ GL+YPG+GPE S+ D GR F A+D +A+ A + EGI PA+E++HAL+++E+L PT+ +VV SG GDKD++T+ Y Sbjct: 171 GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKD-DVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQVQLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHALSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQY 395
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_STAAS (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain MSSA476) GN=trpB PE=3 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 2.191e-59 Identity = 107/226 (47.35%), Postives = 155/226 (68.58%), Query Frame = -1 Query: 135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812 G +A ++A++ WV +++ ++YL G+ +GP P P +VR+FQS+IGKE + Q ++K G PD ++AC+G GSNA+G F+ FI D DV L GVEAAG G D+ KHA + KG GV HG YL+QDE+GQ+ HS+ GL+YPG+GPE S+ D GR F A+D +A+ A + EGI PA+E++HAL+++E+L PT+ +VV SG GDKD++T+ Y Sbjct: 171 GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKD-DVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQVQLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHALSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQY 395
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_STAAE (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain Newman) GN=trpB PE=3 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 2.191e-59 Identity = 107/226 (47.35%), Postives = 155/226 (68.58%), Query Frame = -1 Query: 135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812 G +A ++A++ WV +++ ++YL G+ +GP P P +VR+FQS+IGKE + Q ++K G PD ++AC+G GSNA+G F+ FI D DV L GVEAAG G D+ KHA + KG GV HG YL+QDE+GQ+ HS+ GL+YPG+GPE S+ D GR F A+D +A+ A + EGI PA+E++HAL+++E+L PT+ +VV SG GDKD++T+ Y Sbjct: 171 GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKD-DVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQVQLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHALSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQY 395
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_STAAC (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain COL) GN=trpB PE=3 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 2.191e-59 Identity = 107/226 (47.35%), Postives = 155/226 (68.58%), Query Frame = -1 Query: 135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812 G +A ++A++ WV +++ ++YL G+ +GP P P +VR+FQS+IGKE + Q ++K G PD ++AC+G GSNA+G F+ FI D DV L GVEAAG G D+ KHA + KG GV HG YL+QDE+GQ+ HS+ GL+YPG+GPE S+ D GR F A+D +A+ A + EGI PA+E++HAL+++E+L PT+ +VV SG GDKD++T+ Y Sbjct: 171 GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKD-DVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQVQLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHALSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQY 395
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_STAA8 (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain NCTC 8325) GN=trpB PE=3 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 2.191e-59 Identity = 107/226 (47.35%), Postives = 155/226 (68.58%), Query Frame = -1 Query: 135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812 G +A ++A++ WV +++ ++YL G+ +GP P P +VR+FQS+IGKE + Q ++K G PD ++AC+G GSNA+G F+ FI D DV L GVEAAG G D+ KHA + KG GV HG YL+QDE+GQ+ HS+ GL+YPG+GPE S+ D GR F A+D +A+ A + EGI PA+E++HAL+++E+L PT+ +VV SG GDKD++T+ Y Sbjct: 171 GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKD-DVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQVQLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHALSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQY 395
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_STAA3 (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain USA300) GN=trpB PE=3 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 2.191e-59 Identity = 107/226 (47.35%), Postives = 155/226 (68.58%), Query Frame = -1 Query: 135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812 G +A ++A++ WV +++ ++YL G+ +GP P P +VR+FQS+IGKE + Q ++K G PD ++AC+G GSNA+G F+ FI D DV L GVEAAG G D+ KHA + KG GV HG YL+QDE+GQ+ HS+ GL+YPG+GPE S+ D GR F A+D +A+ A + EGI PA+E++HAL+++E+L PT+ +VV SG GDKD++T+ Y Sbjct: 171 GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKD-DVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQVQLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHALSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQY 395
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SHEAM (Tryptophan synthase beta chain OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=trpB PE=3 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 2.191e-59 Identity = 109/220 (49.55%), Postives = 156/220 (70.91%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A +EA+R+W G+ ++++YL GT GPHP P +VREFQ +IG ET+ Q +EK G PD ++ACVG GSNA+G+F +FI++ V+LIGVE AG G+D+ H A L G+ G++ G + L+QD GQI ++S+ GL++P VGP+ ++L TGRA + +ATD EA++A+Q L R EGI PALE++HALA+ +L +VVN SG GDKD+ TV Sbjct: 168 KDACNEAMRDWSGSYDRAHYLLGTAAGPHPFPTIVREFQRMIGAETKAQMLEKEGRLPDAVIACVGGGSNAIGMFADFIDEPSVKLIGVEPAGKGIDTPMHGAPLKHGKTGIFFGMKAPLMQDAHGQIEESYSISAGLDFPSVGPQHAYLNATGRATYESATDDEALEAFQLLARSEGIIPALESAHALAYALRLAKDATEEQIIVVNLSGRGDKDIFTV 387
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_EDWI9 (Tryptophan synthase beta chain OS=Edwardsiella ictaluri (strain 93-146) GN=trpB PE=3 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 2.191e-59 Identity = 112/221 (50.68%), Postives = 157/221 (71.04%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTV 803 K+A +EA+R+W N ++++YL GT GPHP P +VREFQ +IG ETR+Q ++ G PD +LACVG GSNA+G+F +FI+D V+LIGVE AG G+++G+H A L+ G VG+Y G S ++Q EGQI ++S+ GL++P VGP+ + L GRA++ +ATD EA+ A+ +L R EGI PALE++HALA KL P + +VVN SG GDKD+ TV Sbjct: 166 KDACNEALRDWSANYDQAHYLLGTAAGPHPYPTIVREFQRMIGAETRRQILQAEGRLPDAVLACVGGGSNAIGMFADFIDDASVQLIGVEPAGLGIETGQHGAPLSHGRVGIYFGMRSPMMQTAEGQIEESYSLSAGLDFPSVGPQHAHLNSIGRADYVSATDDEALAAFMQLSRQEGIIPALESAHALAHALKLIHQQPEKEQLLVVNLSGRGDKDIFTV 386
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_BACHD (Tryptophan synthase beta chain OS=Bacillus halodurans GN=trpB PE=3 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 2.191e-59 Identity = 115/223 (51.57%), Postives = 158/223 (70.85%), Query Frame = -1 Query: 135 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 803 K+A++EAIR WV + + ++YL G+VVGPHP P MVR+FQ IIG E R Q E G P ++ACVG GSNA+G F+ F+ D DV+LIGVEAAG G+++ +HAAT+ KG VGV HG+M+YLLQD+ GQI +S+ GL+YPGVGPE ++L TGR ++ TD+EA+ A ++L EGI PA+E++HALA + L ++V SG GDKDV T++ + Sbjct: 171 KDATNEAIRYWVTHADDTFYLIGSVVGPHPYPQMVRDFQRIIGDEARAQFQEITGTLPTEVIACVGGGSNAIGTFYPFLED-DVKLIGVEAAGKGVETSQHAATITKGRVGVIHGSMTYLLQDDAGQITEPYSISAGLDYPGVGPEHAYLASTGRVKYDAVTDKEALDALKQLSVHEGIIPAVESAHALAKAFERAKQLSQEESILVCLSGRGDKDVHTLMKH 392
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SHEDO (Tryptophan synthase beta chain OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=trpB PE=3 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 2.862e-59 Identity = 110/220 (50.00%), Postives = 155/220 (70.45%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A +EA+R+W + +K++YL GT GPHP P +VREFQ +IG+ET++Q +EK G PD ++ACVG GSNA+G+F +FI++ V LIGVE AG G+D+ H A L G+ G++ G + L+QD +GQI ++SV GL++P VGP+ + L GRA + +ATD EA+ +Q+L R EGI PALE++HALA+ KL T +VVN SG GDKD+ TV Sbjct: 168 KDACNEAMRDWSASYDKAHYLLGTAAGPHPFPTIVREFQRMIGEETKQQILEKEGRLPDAVIACVGGGSNAIGMFADFIDEPSVELIGVEPAGKGIDTPMHGAPLKHGKTGIFFGMKAPLMQDRDGQIEESYSVSAGLDFPSVGPQHAHLNAIGRARYESATDDEALAMFQQLARCEGIIPALESAHALAYAVKLAKTATKETILVVNLSGRGDKDIFTV 387 The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 441
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bpback to top |