CX043276

Overview
NameCX043276
Unique NameCX043276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_BACP2 (Tryptophan synthase beta chain OS=Bacillus pumilus (strain SAFR-032) GN=trpB PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.882e-59
Identity = 111/226 (49.12%), Postives = 162/226 (71.68%), Query Frame = -1
Query:  138 DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 815
            +G  K+A++EAIR WV +    +Y+ G+VVGPHP P +V EFQ +IG E ++Q ++K G  P  ++ACVG GSNA+G++  F++DE V LIGVEAAG G+D+  HAAT+ KG  GV HG+++YL+QDE GQI+  +S+  GL+YPG+GPE ++L  +GR ++ +ATDQEA+ A + L   EGI PA+E++HALA   ++  T+     ++V  SG GDKDV T++N
Sbjct:  166 NGTLKDATNEAIRYWVQHCSDHFYMIGSVVGPHPYPQIVSEFQRMIGDEAKEQMLKKEGRLPHKVIACVGGGSNAIGMYRAFLDDE-VDLIGVEAAGKGIDTPLHAATITKGTKGVIHGSLTYLIQDEFGQIIEPYSISAGLDYPGIGPEHAYLHASGRVQYVSATDQEALDALKLLTEKEGILPAIESAHALAKAFEMSRTMSEDEIILVCLSGRGDKDVHTLMN 390          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_CHLTR (Tryptophan synthase beta chain OS=Chlamydia trachomatis GN=trpB PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 6.376e-59
Identity = 109/221 (49.32%), Postives = 153/221 (69.23%), Query Frame = -1
Query:  141 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVV 803
            K+A ++A+++W      ++Y  G+ +GP P P +VR FQS+I  E ++Q     G  PD+L+AC+G GSNA+G FH FI +  V+LIGVE  G G+ SGKHAA  A G  GV+HG  SYLLQD++GQ+L THS+  GL+YP VGP+ + + ++GRA +  ATD+EA++A+  L R EGI PALE+SHALA L  + P+LP    V+VN SG GDKD+  ++
Sbjct:  164 KDAVNQALQDWATTHSFTHYCLGSALGPLPYPDIVRFFQSVISAEVKEQIHAVAGRDPDILIACIGGGSNAIGFFHHFIPNPKVQLIGVEGGGLGISSGKHAARFATGRPGVFHGFYSYLLQDDDGQVLQTHSISAGLDYPSVGPDHAEMHESGRAFYTLATDEEALRAFFLLTRNEGIIPALESSHALAHLVSIAPSLPKEQIVIVNLSGRGDKDLPQII 384          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB1_VIBPA (Tryptophan synthase beta chain 1 OS=Vibrio parahaemolyticus GN=trpB1 PE=3 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 6.376e-59
Identity = 111/221 (50.23%), Postives = 155/221 (70.14%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTV 803
            K+A +EA+R+W G+ E ++YL GT  GPHP P +VREFQ +IG+ET+ Q + + G  PD ++ACVG GSNA+G+F +FI +E VRLIGVE AG G+D+ +H A L  G+ G++ G  + L+QDE GQ+  ++SV  GL++P VGP+ + L   GRAE+   TD EA++A+Q L R EGI PALE+SHALA   ++    P   + +VVN SG GDKD+ TV
Sbjct:  166 KDACNEALRDWSGSYEDAHYLLGTAAGPHPFPTIVREFQRMIGEETKNQILAREGRLPDAVIACVGGGSNAIGMFADFIEEESVRLIGVEPAGKGIDTDQHGAPLKHGKTGIFFGMKAPLMQDENGQVEESYSVSAGLDFPSVGPQHAHLNAIGRAEYDNVTDDEALEAFQELARSEGIIPALESSHALAHALRMARENPEKEQLLVVNLSGRGDKDIFTV 386          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_STRT2 (Tryptophan synthase beta chain OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=trpB PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 8.327e-59
Identity = 106/218 (48.62%), Postives = 154/218 (70.64%), Query Frame = -1
Query:  153 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGK-PDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDV 803
            K+A + A+R WV  +E ++Y+ G+ +GP P P +VR+FQS+IG+E ++Q  E  GGK PD ++AC+G GSNA+G+F+ F+ND+ V + G EA+G GLD+ KHAAT AKG  G+ HGA+  +LQD  GQI+   S+  GL+YPGVGPE  +  + GRA + + TD+EA++ ++ L RLEGI PALE+SHA+A  +K+   +     ++V  SG GDKDV
Sbjct:  171 KDAVNAALRAWVAGIEDTHYIMGSALGPAPFPEIVRDFQSVIGREAKRQYAEISGGKLPDAVMACIGGGSNAIGMFYPFVNDKSVAMYGAEASGLGLDTEKHAATFAKGRPGILHGALMDVLQDAHGQIMEAFSISAGLDYPGVGPEHCYFNEIGRATYDSITDEEALEGFKLLSRLEGIIPALESSHAIALAQKVAAKMSPDQSLIVCLSGRGDKDV 388          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_BACLD (Tryptophan synthase beta chain OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=trpB PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.088e-58
Identity = 114/225 (50.67%), Postives = 156/225 (69.33%), Query Frame = -1
Query:  141 DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVV 815
            +G  K+A++EAIR WV + +  +Y+ G+VVGPHP P +VREFQ +IG+E + Q  +     PD ++ACVG GSNA+G+F  FI +E V LIGVEAAG G+D+  HAAT+ KG  GV HG+++YL+QDE GQI+  +S+  GL+YPGVGPE + L  TGR  + + TD EAV A + L   EGI PA+E++HALA   ++   LP    V+V  SG GDKDV T++
Sbjct:  166 NGTLKDATNEAIRYWVQHCQDHFYMIGSVVGPHPYPYIVREFQRMIGEEAKAQFYQLEQSLPDKVVACVGGGSNAIGMFSAFI-EETVELIGVEAAGKGVDTPLHAATITKGTKGVIHGSLTYLIQDEYGQIIEPYSISAGLDYPGVGPEHAHLHQTGRVTYESVTDDEAVSALRLLTETEGILPAIESAHALAKAFEIAKELPREKSVLVCLSGRGDKDVHTLM 389          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB2_COREF (Tryptophan synthase beta chain 2 OS=Corynebacterium efficiens GN=trpB2 PE=3 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 1.088e-58
Identity = 111/215 (51.63%), Postives = 149/215 (69.30%), Query Frame = -1
Query:  153 AIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIND----EDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDV 785
            AI +WV NLE ++YL GT  GPHP P +V++F S+I +E+R+Q +E+ G  PD ++ACVG GSNA+G F +++ D    E VRLIGVE AG+GLD+  + A + +G     HG+ SY L DE+G +  +HSV  GL+YPGVGPE + L+DTGRAE+  ATD EA+QA++ L R EGI PALE+SHALA   K+         ++VN SG GDKDV
Sbjct:  186 AINDWVNNLEDTHYLLGTAAGPHPFPTLVKKFHSVISRESREQMLERTGALPDAVVACVGGGSNAIGAFAQYLEDQPGNEKVRLIGVEPAGYGLDTDLNGAPIHEGRTMHLHGSNSYALLDEDGNLRNSHSVSAGLDYPGVGPEHAHLKDTGRAEYVGATDAEALQAFRMLSRYEGIIPALESSHALAHALKMAAEATEPINILVNLSGRGDKDV 400          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_STRTD (Tryptophan synthase beta chain OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=trpB PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.855e-58
Identity = 105/218 (48.17%), Postives = 154/218 (70.64%), Query Frame = -1
Query:  153 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGK-PDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDV 803
            K+A + A+R WV  ++ ++Y+ G+ +GP P P +VR+FQS+IG+E ++Q  E  GGK PD ++AC+G GSNA+G+F+ F+ND+ V + G EA+G GLD+ KHAAT AKG  G+ HGA+  +LQD  GQI+   S+  GL+YPGVGPE  +  + GRA + + TD+EA++ ++ L RLEGI PALE+SHA+A  +K+   +     ++V  SG GDKDV
Sbjct:  171 KDAVNAALRAWVAGIDDTHYIMGSALGPAPFPEIVRDFQSVIGREVKRQYAEISGGKLPDAVMACIGGGSNAIGMFYPFVNDKSVAMYGAEASGLGLDTEKHAATFAKGRPGILHGALMDVLQDAHGQIMEAFSISAGLDYPGVGPEHCYFNEIGRATYDSITDEEALEGFKLLSRLEGIIPALESSHAIALAQKVAAKMSPDQSLIVCLSGRGDKDV 388          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_STAAB (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.855e-58
Identity = 106/226 (46.90%), Postives = 153/226 (67.70%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G   +A ++A++ WV +++ ++YL G+ +GP P P +VR+FQS+IGKE + Q ++K G  PD ++AC+G GSNA+G F+ FI D DV L GVEAAG G D+ KHA  + KG  GV HG   YL+QDE GQ+   HS+  GL+YPG+GPE S+  D GR  F  A+D +A+ A     + EG  PA+E++HAL+++E+L PT+     +VV  SG GDKD++T+  Y
Sbjct:  171 GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKD-DVALYGVEAAGQGEDTDKHALAIGKGSPGVLHGTKMYLIQDEGGQVQLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGTIPAIESAHALSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQY 395          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SHEHH (Tryptophan synthase beta chain OS=Shewanella halifaxensis (strain HAW-EB4) GN=trpB PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.855e-58
Identity = 108/222 (48.65%), Postives = 155/222 (69.82%), Query Frame = -1
Query:  138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803
            K+A +EA+R+W G  +K++YL GT  GPHP P +VREFQ +IG ET++Q +E+ G  PD ++ACVG GSNA+G+F +FI++ +V LIGVE AG G+D+  H A L  G+ G++ G  + L+QD EGQ+  ++SV  GL++P VGP+ + L   GRA + +ATD EA++ +Q L R EGI PALE++HA+A+  KL         +VVN SG GDKD+ TV +
Sbjct:  166 KDACNEAMRDWSGCYDKAHYLLGTAAGPHPYPTIVREFQRMIGAETKRQILEREGRLPDAVIACVGGGSNAIGMFADFIDEPEVALIGVEPAGKGIDTPMHGAPLHHGKTGIFFGMKAPLMQDSEGQVEESYSVSAGLDFPSVGPQHAHLAAIGRATYESATDDEALETFQLLARCEGIIPALESAHAIAYAVKLAKEATKETLLVVNLSGRGDKDIFTVAD 387          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SHEFN (Tryptophan synthase beta chain OS=Shewanella frigidimarina (strain NCIMB 400) GN=trpB PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.855e-58
Identity = 108/222 (48.65%), Postives = 155/222 (69.82%), Query Frame = -1
Query:  138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803
            K+A +EA+R+W  + +K++YL GT  GPHP P +VREFQ +IG+ET+KQ +EK G  PD ++ACVG GSNA+G+F +FI++  V LIGVE AG G+D+  H A L  G+ G++ G  S L+Q+ +GQI  ++SV  GL++P VGP+ + L   GRA + +ATD EA++ +Q L R EGI PALE++HALA+  ++         +VVN SG GDKD+ TV +
Sbjct:  168 KDACNEAMRDWSASYDKAHYLLGTAAGPHPFPTIVREFQRMIGEETKKQILEKEGRLPDAVIACVGGGSNAIGMFADFIDEPSVELIGVEPAGKGIDTPMHGAPLKHGKTGIFFGMKSPLMQNSDGQIEESYSVSAGLDFPSVGPQHAHLNAIGRARYESATDDEALEMFQTLARCEGIIPALESAHALAYAVRMAKEATKETILVVNLSGRGDKDIFTVAD 389          
The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
TRPB_BACP24.882e-5949.12Tryptophan synthase beta chain OS=Bacillus pumilus... [more]
TRPB_CHLTR6.376e-5949.32Tryptophan synthase beta chain OS=Chlamydia tracho... [more]
TRPB1_VIBPA6.376e-5950.23Tryptophan synthase beta chain 1 OS=Vibrio parahae... [more]
TRPB_STRT28.327e-5948.62Tryptophan synthase beta chain OS=Streptococcus th... [more]
TRPB_BACLD1.088e-5850.67Tryptophan synthase beta chain OS=Bacillus licheni... [more]
TRPB2_COREF1.088e-5851.63Tryptophan synthase beta chain 2 OS=Corynebacteriu... [more]
TRPB_STRTD1.855e-5848.17Tryptophan synthase beta chain OS=Streptococcus th... [more]
TRPB_STAAB1.855e-5846.90Tryptophan synthase beta chain OS=Staphylococcus a... [more]
TRPB_SHEHH1.855e-5848.65Tryptophan synthase beta chain OS=Shewanella halif... [more]
TRPB_SHEFN1.855e-5848.65Tryptophan synthase beta chain OS=Shewanella frigi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTGAGAAAAATAGGTCTTAAATTAATAGATTTCTCGGGTTGCTGCT
AAATTGACGGGAACCCTTAAATATTGTGGTCACCACTTCTTCGATCCATT
ACAATTTCTACGTCGATAATTATTGATTGTATCTGTAATTGACGACCGTG
TCGACGTCCTTATCCCCACCTCCACTACAGTTGACAACAACTTTTGCACC
ATTAGGTAAAGTAGGGCAAAGTTTCTCTAGAAATGCTAATGCATGAGATG
CCTCAAGGGCCGGAAATATGCCTTCTAATCTGCACAGCCGTTGATATGCT
TGGACAGCTTCTTGGTCAGTCGCAGTGTAGAACTCCGCACGCCCAGTGTC
CCTAAGAAAGCTTATCTCCGGGCCAACTCCTGGATACTCTAGCCCTACAC
CGACAGAATGAGTCCCCAAGATTTGGCCTTCTTCATCTTGCAACAAGTAG
CTCATGGCTCCATGATAAACACCCACTTCCCCTTTAGCCAGAGTTGCAGC
GTGTTTGCCGCTGTCCAAGCCAAATCCAGCAGCCTCCACTCCAATCAATC
TCACATCTTCATCATTTATGAATTCATGAAACAAACCCAACGCATTTGAT
CCACTGCCCACACAAGCCAGCAATACATCAGGCTTGCCTCCCCATTTTTC
CATTGCTTGTTTTCTCGTTTCTTTGCCTATGATTGATTGAAATTCTCGTA
CCATTATTGGACACGGGTGAGGCCCCACCACCGTACCCGTTAAATAATAG
CTTTTTTCTAAGTTCCCCACCCAATTTCTGATAGCTTCTGAGCTTGCTTC
TTTGAAACATCCATCCACTGC
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