CX043276
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_BACP2 (Tryptophan synthase beta chain OS=Bacillus pumilus (strain SAFR-032) GN=trpB PE=3 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 4.882e-59 Identity = 111/226 (49.12%), Postives = 162/226 (71.68%), Query Frame = -1 Query: 138 DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 815 +G K+A++EAIR WV + +Y+ G+VVGPHP P +V EFQ +IG E ++Q ++K G P ++ACVG GSNA+G++ F++DE V LIGVEAAG G+D+ HAAT+ KG GV HG+++YL+QDE GQI+ +S+ GL+YPG+GPE ++L +GR ++ +ATDQEA+ A + L EGI PA+E++HALA ++ T+ ++V SG GDKDV T++N Sbjct: 166 NGTLKDATNEAIRYWVQHCSDHFYMIGSVVGPHPYPQIVSEFQRMIGDEAKEQMLKKEGRLPHKVIACVGGGSNAIGMYRAFLDDE-VDLIGVEAAGKGIDTPLHAATITKGTKGVIHGSLTYLIQDEFGQIIEPYSISAGLDYPGIGPEHAYLHASGRVQYVSATDQEALDALKLLTEKEGILPAIESAHALAKAFEMSRTMSEDEIILVCLSGRGDKDVHTLMN 390
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_CHLTR (Tryptophan synthase beta chain OS=Chlamydia trachomatis GN=trpB PE=3 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 6.376e-59 Identity = 109/221 (49.32%), Postives = 153/221 (69.23%), Query Frame = -1 Query: 141 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVV 803 K+A ++A+++W ++Y G+ +GP P P +VR FQS+I E ++Q G PD+L+AC+G GSNA+G FH FI + V+LIGVE G G+ SGKHAA A G GV+HG SYLLQD++GQ+L THS+ GL+YP VGP+ + + ++GRA + ATD+EA++A+ L R EGI PALE+SHALA L + P+LP V+VN SG GDKD+ ++ Sbjct: 164 KDAVNQALQDWATTHSFTHYCLGSALGPLPYPDIVRFFQSVISAEVKEQIHAVAGRDPDILIACIGGGSNAIGFFHHFIPNPKVQLIGVEGGGLGISSGKHAARFATGRPGVFHGFYSYLLQDDDGQVLQTHSISAGLDYPSVGPDHAEMHESGRAFYTLATDEEALRAFFLLTRNEGIIPALESSHALAHLVSIAPSLPKEQIVIVNLSGRGDKDLPQII 384
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB1_VIBPA (Tryptophan synthase beta chain 1 OS=Vibrio parahaemolyticus GN=trpB1 PE=3 SV=2) HSP 1 Score: 227.639 bits (579), Expect = 6.376e-59 Identity = 111/221 (50.23%), Postives = 155/221 (70.14%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTV 803 K+A +EA+R+W G+ E ++YL GT GPHP P +VREFQ +IG+ET+ Q + + G PD ++ACVG GSNA+G+F +FI +E VRLIGVE AG G+D+ +H A L G+ G++ G + L+QDE GQ+ ++SV GL++P VGP+ + L GRAE+ TD EA++A+Q L R EGI PALE+SHALA ++ P + +VVN SG GDKD+ TV Sbjct: 166 KDACNEALRDWSGSYEDAHYLLGTAAGPHPFPTIVREFQRMIGEETKNQILAREGRLPDAVIACVGGGSNAIGMFADFIEEESVRLIGVEPAGKGIDTDQHGAPLKHGKTGIFFGMKAPLMQDENGQVEESYSVSAGLDFPSVGPQHAHLNAIGRAEYDNVTDDEALEAFQELARSEGIIPALESSHALAHALRMARENPEKEQLLVVNLSGRGDKDIFTV 386
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_STRT2 (Tryptophan synthase beta chain OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=trpB PE=3 SV=1) HSP 1 Score: 227.254 bits (578), Expect = 8.327e-59 Identity = 106/218 (48.62%), Postives = 154/218 (70.64%), Query Frame = -1 Query: 153 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGK-PDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDV 803 K+A + A+R WV +E ++Y+ G+ +GP P P +VR+FQS+IG+E ++Q E GGK PD ++AC+G GSNA+G+F+ F+ND+ V + G EA+G GLD+ KHAAT AKG G+ HGA+ +LQD GQI+ S+ GL+YPGVGPE + + GRA + + TD+EA++ ++ L RLEGI PALE+SHA+A +K+ + ++V SG GDKDV Sbjct: 171 KDAVNAALRAWVAGIEDTHYIMGSALGPAPFPEIVRDFQSVIGREAKRQYAEISGGKLPDAVMACIGGGSNAIGMFYPFVNDKSVAMYGAEASGLGLDTEKHAATFAKGRPGILHGALMDVLQDAHGQIMEAFSISAGLDYPGVGPEHCYFNEIGRATYDSITDEEALEGFKLLSRLEGIIPALESSHAIALAQKVAAKMSPDQSLIVCLSGRGDKDV 388
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_BACLD (Tryptophan synthase beta chain OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=trpB PE=3 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 1.088e-58 Identity = 114/225 (50.67%), Postives = 156/225 (69.33%), Query Frame = -1 Query: 141 DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVV 815 +G K+A++EAIR WV + + +Y+ G+VVGPHP P +VREFQ +IG+E + Q + PD ++ACVG GSNA+G+F FI +E V LIGVEAAG G+D+ HAAT+ KG GV HG+++YL+QDE GQI+ +S+ GL+YPGVGPE + L TGR + + TD EAV A + L EGI PA+E++HALA ++ LP V+V SG GDKDV T++ Sbjct: 166 NGTLKDATNEAIRYWVQHCQDHFYMIGSVVGPHPYPYIVREFQRMIGEEAKAQFYQLEQSLPDKVVACVGGGSNAIGMFSAFI-EETVELIGVEAAGKGVDTPLHAATITKGTKGVIHGSLTYLIQDEYGQIIEPYSISAGLDYPGVGPEHAHLHQTGRVTYESVTDDEAVSALRLLTETEGILPAIESAHALAKAFEIAKELPREKSVLVCLSGRGDKDVHTLM 389
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB2_COREF (Tryptophan synthase beta chain 2 OS=Corynebacterium efficiens GN=trpB2 PE=3 SV=2) HSP 1 Score: 226.868 bits (577), Expect = 1.088e-58 Identity = 111/215 (51.63%), Postives = 149/215 (69.30%), Query Frame = -1 Query: 153 AIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIND----EDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDV 785 AI +WV NLE ++YL GT GPHP P +V++F S+I +E+R+Q +E+ G PD ++ACVG GSNA+G F +++ D E VRLIGVE AG+GLD+ + A + +G HG+ SY L DE+G + +HSV GL+YPGVGPE + L+DTGRAE+ ATD EA+QA++ L R EGI PALE+SHALA K+ ++VN SG GDKDV Sbjct: 186 AINDWVNNLEDTHYLLGTAAGPHPFPTLVKKFHSVISRESREQMLERTGALPDAVVACVGGGSNAIGAFAQYLEDQPGNEKVRLIGVEPAGYGLDTDLNGAPIHEGRTMHLHGSNSYALLDEDGNLRNSHSVSAGLDYPGVGPEHAHLKDTGRAEYVGATDAEALQAFRMLSRYEGIIPALESSHALAHALKMAAEATEPINILVNLSGRGDKDV 400
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_STRTD (Tryptophan synthase beta chain OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=trpB PE=3 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 1.855e-58 Identity = 105/218 (48.17%), Postives = 154/218 (70.64%), Query Frame = -1 Query: 153 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGK-PDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDV 803 K+A + A+R WV ++ ++Y+ G+ +GP P P +VR+FQS+IG+E ++Q E GGK PD ++AC+G GSNA+G+F+ F+ND+ V + G EA+G GLD+ KHAAT AKG G+ HGA+ +LQD GQI+ S+ GL+YPGVGPE + + GRA + + TD+EA++ ++ L RLEGI PALE+SHA+A +K+ + ++V SG GDKDV Sbjct: 171 KDAVNAALRAWVAGIDDTHYIMGSALGPAPFPEIVRDFQSVIGREVKRQYAEISGGKLPDAVMACIGGGSNAIGMFYPFVNDKSVAMYGAEASGLGLDTEKHAATFAKGRPGILHGALMDVLQDAHGQIMEAFSISAGLDYPGVGPEHCYFNEIGRATYDSITDEEALEGFKLLSRLEGIIPALESSHAIALAQKVAAKMSPDQSLIVCLSGRGDKDV 388
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_STAAB (Tryptophan synthase beta chain OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trpB PE=3 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 1.855e-58 Identity = 106/226 (46.90%), Postives = 153/226 (67.70%), Query Frame = -1 Query: 135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812 G +A ++A++ WV +++ ++YL G+ +GP P P +VR+FQS+IGKE + Q ++K G PD ++AC+G GSNA+G F+ FI D DV L GVEAAG G D+ KHA + KG GV HG YL+QDE GQ+ HS+ GL+YPG+GPE S+ D GR F A+D +A+ A + EG PA+E++HAL+++E+L PT+ +VV SG GDKD++T+ Y Sbjct: 171 GTLSDAVNKALQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGGGSNAIGTFYPFIKD-DVALYGVEAAGQGEDTDKHALAIGKGSPGVLHGTKMYLIQDEGGQVQLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGTIPAIESAHALSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQY 395
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SHEHH (Tryptophan synthase beta chain OS=Shewanella halifaxensis (strain HAW-EB4) GN=trpB PE=3 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 1.855e-58 Identity = 108/222 (48.65%), Postives = 155/222 (69.82%), Query Frame = -1 Query: 138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803 K+A +EA+R+W G +K++YL GT GPHP P +VREFQ +IG ET++Q +E+ G PD ++ACVG GSNA+G+F +FI++ +V LIGVE AG G+D+ H A L G+ G++ G + L+QD EGQ+ ++SV GL++P VGP+ + L GRA + +ATD EA++ +Q L R EGI PALE++HA+A+ KL +VVN SG GDKD+ TV + Sbjct: 166 KDACNEAMRDWSGCYDKAHYLLGTAAGPHPYPTIVREFQRMIGAETKRQILEREGRLPDAVIACVGGGSNAIGMFADFIDEPEVALIGVEPAGKGIDTPMHGAPLHHGKTGIFFGMKAPLMQDSEGQVEESYSVSAGLDFPSVGPQHAHLAAIGRATYESATDDEALETFQLLARCEGIIPALESAHAIAYAVKLAKEATKETLLVVNLSGRGDKDIFTVAD 387
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SHEFN (Tryptophan synthase beta chain OS=Shewanella frigidimarina (strain NCIMB 400) GN=trpB PE=3 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 1.855e-58 Identity = 108/222 (48.65%), Postives = 155/222 (69.82%), Query Frame = -1 Query: 138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803 K+A +EA+R+W + +K++YL GT GPHP P +VREFQ +IG+ET+KQ +EK G PD ++ACVG GSNA+G+F +FI++ V LIGVE AG G+D+ H A L G+ G++ G S L+Q+ +GQI ++SV GL++P VGP+ + L GRA + +ATD EA++ +Q L R EGI PALE++HALA+ ++ +VVN SG GDKD+ TV + Sbjct: 168 KDACNEAMRDWSASYDKAHYLLGTAAGPHPFPTIVREFQRMIGEETKKQILEKEGRLPDAVIACVGGGSNAIGMFADFIDEPSVELIGVEPAGKGIDTPMHGAPLKHGKTGIFFGMKSPLMQNSDGQIEESYSVSAGLDFPSVGPQHAHLNAIGRARYESATDDEALEMFQTLARCEGIIPALESAHALAYAVRMAKEATKETILVVNLSGRGDKDIFTVAD 389 The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 441
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bpback to top |