CX043276

Overview
NameCX043276
Unique NameCX043276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_FRATW (Tryptophan synthase beta chain OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=trpB PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.398e-58
Identity = 109/221 (49.32%), Postives = 160/221 (72.40%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTV 803
            K+A +EA+R+W  N  K++YL GT  GPHP P +VREFQ +IG+ET++Q + K G  PD ++ACVG GSNA+G+F +FI++++V+LIGVE AG G+++G+H A L  G+ G++ G  + L+Q+ +GQI  ++S+  GL++P VGP+ + L    RA++ +ATD EA+ A++ LC+ EGI PALE+SHALA   KL    PN  + +VVN SG GDKD+ TV
Sbjct:  166 KDACNEALRDWSANYSKAHYLLGTAAGPHPFPTIVREFQRMIGEETKQQMLAKEGRLPDAVIACVGGGSNAIGMFADFIDEKNVKLIGVEPAGKGIETGEHGAPLKHGKTGIFFGMKAPLMQNSDGQIEESYSISAGLDFPSVGPQHAHLLAICRAKYASATDDEALDAFKLLCKKEGIIPALESSHALAHALKLAYEDPNKEQLLVVNLSGRGDKDIFTV 386          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_ELUMP (Tryptophan synthase beta chain OS=Elusimicrobium minutum (strain Pei191) GN=trpB PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.398e-58
Identity = 112/222 (50.45%), Postives = 153/222 (68.92%), Query Frame = -1
Query:  138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803
            KEA   A  +++ + E   Y  G+VVGPHP P+MV  FQSI+GKE R+Q +E+ G  PD ++ACVG GSN++G+F  F  D+ V+L GVE AG GL++G HAA LAKG VGV HG   Y +QD++G  +GTHSV  GL+Y GVGP+  +L+D+GR  + +A D EAV A+  L R EGI PALE++HA+A+  KL   L     ++VN SG G+KD+D V++
Sbjct:  181 KEAVDAAFDDYLKDPETQMYAIGSVVGPHPFPLMVASFQSIVGKEAREQFLEQEGRLPDNVVACVGGGSNSMGIFSGFFADKTVKLTGVEPAGKGLETGLHAAPLAKGRVGVVHGFKCYFMQDDKGNPMGTHSVASGLDYLGVGPQHCYLKDSGRVTYRSACDDEAVDAFFMLSRKEGIIPALESAHAVAYALKLSKELGKDKSILVNLSGRGEKDLDYVLS 402          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_ACTP7 (Tryptophan synthase beta chain OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=trpB PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.398e-58
Identity = 109/221 (49.32%), Postives = 157/221 (71.04%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTV 803
            K+A  EA+R+W  N E ++YL GT  GPHP P MVREFQ +IG+ET++Q +EK    PD ++A VG GSNA+G+F  FI ++ V+LIGVE AG G+++G+H A L  G  G+Y G  S ++Q ++GQI  ++S+  GL++P VGP+ ++L  +GRA++ + TD+EA+ A+Q L + EGI PALE+SHALA+  KL    P+  + +VVN SG GDKD+ TV
Sbjct:  168 KDACCEAMRDWAANYETTHYLIGTAAGPHPFPTMVREFQKMIGEETKRQILEKENRLPDAVIAAVGGGSNAIGMFAGFIEEKSVQLIGVEPAGKGIETGEHGAPLKHGTTGIYFGMKSPIMQTKDGQIEESYSISAGLDFPSVGPQHAYLNASGRADYVSITDKEALDAFQALAQHEGIIPALESSHALAYALKLIAQNPDKEQLLVVNLSGRGDKDIFTV 388          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_ACIBL (Tryptophan synthase beta chain OS=Acidobacteria bacterium (strain Ellin345) GN=trpB PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.398e-58
Identity = 110/217 (50.69%), Postives = 147/217 (67.74%), Query Frame = -1
Query:  153 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDV 803
            K+A +EA+R+WV N+  ++YL G+V+G HP P+MVR+F  +I +E + Q M+  G  P  ++ACVG GSNA+G F+EFI D+ V+LIGVEA G G   G+HAA    G  GV  G  SY+LQDE GQI GTHSV  GL+YP +GPE + L + GRAE+  A+D EA+ A   L + EGI PALE+SHA+A   +  P +     V+VN SG GDKD+
Sbjct:  183 KDAINEAMRDWVTNVRTTHYLLGSVLGAHPYPMMVRDFHRVISREAKAQIMKAEGKLPTAIIACVGGGSNAIGAFYEFIGDKKVQLIGVEAGGRGKALGEHAARFRGGAPGVLQGTYSYVLQDEHGQIAGTHSVSAGLDYPAIGPEHAALAEAGRAEYVAASDAEALAACSMLAKTEGIIPALESSHAVAECVRRAPQMRKSDVVIVNISGRGDKDI 399          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_STRT1 (Tryptophan synthase beta chain OS=Streptococcus thermophilus (strain CNRZ 1066) GN=trpB PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.049e-58
Identity = 105/218 (48.17%), Postives = 153/218 (70.18%), Query Frame = -1
Query:  153 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGK-PDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDV 803
            K+A + A+R WV  +E ++Y+ G+ +GP P P +VR+FQS+IG+E ++Q  E  GGK PD ++AC+G GSNA+G+F+ F+ND+ V + G EA+G GLD+ KHAAT AKG  G+ HGA+  +LQD  GQI+   S+  GL+YPGVGPE  +  + GRA + + TD+EA++ ++ L  LEGI PALE+SHA+A  +K+   +     ++V  SG GDKDV
Sbjct:  171 KDAVNAALRAWVAGIEDTHYIMGSALGPAPFPEIVRDFQSVIGREAKRQYAEISGGKLPDAVMACIGGGSNAIGMFYPFVNDKSVAMYGAEASGLGLDTEKHAATFAKGRPGILHGALMDVLQDAHGQIMEAFSISAGLDYPGVGPEHCYFNEIGRATYDSITDEEALEGFKLLSCLEGIIPALESSHAIALAQKVAAKMSPDQSLIVCLSGRGDKDV 388          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PSYIN (Tryptophan synthase beta chain OS=Psychromonas ingrahamii (strain 37) GN=trpB PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.049e-58
Identity = 105/220 (47.73%), Postives = 153/220 (69.55%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A +EA+R+W G+ + ++YL GTV GPHP P +VREFQ IIG+E ++Q ++K G  PD ++ACVG GSNA+G+F++FI+D  V LIGVE  G G+++GKH   +  G  G++ G  S ++QD+ GQ+  ++S+  GL++P VGP+ + L +TGRA++  ATD EA+ A+  L   EGI PALE++HALA   KL         ++VN SG GDKD+ TV
Sbjct:  166 KDACNEALRDWAGSYDTAHYLLGTVAGPHPFPTIVREFQKIIGEEAKQQVLKKEGVLPDKVIACVGGGSNAIGIFNDFIDDPSVELIGVEPGGRGIETGKHGCPITYGSKGIFFGMHSLMMQDKHGQVKESYSISAGLDFPSVGPQHAHLAETGRAQYVYATDDEALDAFHELSLKEGIIPALESAHALAHALKLIKHDDKEQIIIVNLSGRGDKDIFTV 385          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_BUCMH (Tryptophan synthase beta chain OS=Buchnera aphidicola subsp. Melaphis rhois GN=trpB PE=3 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 9.207e-58
Identity = 109/227 (48.02%), Postives = 155/227 (68.28%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKV-VVNCSGGGDKDVDTVVNY 812
            G  K+A +EA+R+W  N   ++Y+ GT  GPHP P +V+EFQSIIGKET++Q + +    P+ ++ACVG GSNA+G+F  FI+D  V LIGVE  G G+ + KH A L  GE G++ G  + ++Q EEGQI  + S+  GL++P VGPE ++L  T RA++ + TD EAV A++ L + EGI PALE+SHALA+  KL    P   ++ +VN SG GDKD++TV N+
Sbjct:  163 GTLKDACNEALRDWSENYINAHYMLGTAAGPHPYPTIVKEFQSIIGKETKRQIVREENCLPNAVIACVGGGSNAIGIFSSFISDNSVSLIGVEPGGKGIHTNKHGAPLTHGETGIFFGMKTKIMQTEEGQIKESWSISAGLDFPAVGPEHAWLYSTKRAQYVSITDHEAVNAFRCLSKSEGIIPALESSHALAYALKLMNNHPQKNQILIVNISGRGDKDIETVKNF 389          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_VIBFM (Tryptophan synthase beta chain OS=Vibrio fischeri (strain MJ11) GN=trpB PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.202e-57
Identity = 110/221 (49.77%), Postives = 154/221 (69.68%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTV 803
            K+A +EA+R+W    E ++YL GT  GPHP P +VREFQ +IG+ET+ Q + + G  PD ++ACVG GSNA+G+F +FI +E V+LIGVE AG G+D+ +H A L  G+ G++ G  + L+QDE GQI  ++SV  GL++P VGP+ + L   GRAE+   TD EA++A++ L R EGI PALE+SHALA+  +L    P   + +VVN SG GDKD+ TV
Sbjct:  166 KDACNEALRDWSATYETAHYLLGTAAGPHPFPTIVREFQRMIGEETKMQILAREGRLPDAVIACVGGGSNAIGMFADFIEEESVKLIGVEPAGKGIDTDQHGAPLKHGKTGIFFGMKAPLMQDEHGQIEESYSVSAGLDFPSVGPQHAHLNAIGRAEYGAVTDDEALEAFKILARNEGIIPALESSHALAYALQLAQAEPEKEQLLVVNLSGRGDKDIFTV 386          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SODGM (Tryptophan synthase beta chain OS=Sodalis glossinidius (strain morsitans) GN=trpB PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.570e-57
Identity = 108/221 (48.87%), Postives = 155/221 (70.14%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKV-VVNCSGGGDKDVDTV 803
            K+A +EA+R+W  + E+++Y+ GT  GPHP P +VREFQ +IG+ETR Q  E     PD ++ACVG GSNA+G+F +FI++  VRLIGVE  G G+++ +H A+L  G  G+Y G  S ++Q  EGQI  ++S+  GL++P VGP+ ++L   GRAE+ +ATD+EA+ A++RL R EGI PALE+SHALA   ++    P   ++ VVN SG GDKD+ TV
Sbjct:  166 KDACNEALRDWSDSYERAHYMLGTAAGPHPFPTIVREFQRMIGEETRAQLQEHEQRLPDAVIACVGGGSNAIGMFADFIDEPAVRLIGVEPGGLGIETRQHGASLKHGRTGIYFGMKSPMMQSAEGQIEESYSISAGLDFPSVGPQHAYLDSIGRAEYISATDEEALDAFRRLSRHEGIIPALESSHALAHALRMIQAEPEKEQILVVNLSGRGDKDIFTV 386          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_HAES2 (Tryptophan synthase beta chain OS=Haemophilus somnus (strain 2336) GN=trpB PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.570e-57
Identity = 109/221 (49.32%), Postives = 154/221 (69.68%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAK-VVVNCSGGGDKDVDTV 803
            K+A  EA+R+W  N E ++YL GT  GPHP P +VREFQ +IG+ET+ Q + K    PD ++A VG GSNA+G+F EFI ++ V+LIG+E AG G+ +GKH A L  G +G+Y G  S ++Q ++GQI  ++S+  GL++P VGPE ++L   GRA++ + TD EA++A+Q L + EGI PALE+SHALA+  KL    P   + +VVN SG GDKD+ TV
Sbjct:  168 KDACCEAMRDWSANYETTHYLLGTAAGPHPFPTIVREFQKMIGEETKCQILAKENRLPDAVIAAVGGGSNAIGMFAEFIAEKSVQLIGIEPAGNGIHTGKHGAPLRHGSIGIYFGMKSPIMQTQDGQIEESYSISAGLDFPSVGPEHAYLHTIGRAQYESITDDEAIEAFQALAKHEGIIPALESSHALAYALKLIVQNPEKEQLLVVNLSGRGDKDIFTV 388          
The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
TRPB_FRATW5.398e-5849.32Tryptophan synthase beta chain OS=Francisella tula... [more]
TRPB_ELUMP5.398e-5850.45Tryptophan synthase beta chain OS=Elusimicrobium m... [more]
TRPB_ACTP75.398e-5849.32Tryptophan synthase beta chain OS=Actinobacillus p... [more]
TRPB_ACIBL5.398e-5850.69Tryptophan synthase beta chain OS=Acidobacteria ba... [more]
TRPB_STRT17.049e-5848.17Tryptophan synthase beta chain OS=Streptococcus th... [more]
TRPB_PSYIN7.049e-5847.73Tryptophan synthase beta chain OS=Psychromonas ing... [more]
TRPB_BUCMH9.207e-5848.02Tryptophan synthase beta chain OS=Buchnera aphidic... [more]
TRPB_VIBFM1.202e-5749.77Tryptophan synthase beta chain OS=Vibrio fischeri ... [more]
TRPB_SODGM1.570e-5748.87Tryptophan synthase beta chain OS=Sodalis glossini... [more]
TRPB_HAES21.570e-5749.32Tryptophan synthase beta chain OS=Haemophilus somn... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTGAGAAAAATAGGTCTTAAATTAATAGATTTCTCGGGTTGCTGCT
AAATTGACGGGAACCCTTAAATATTGTGGTCACCACTTCTTCGATCCATT
ACAATTTCTACGTCGATAATTATTGATTGTATCTGTAATTGACGACCGTG
TCGACGTCCTTATCCCCACCTCCACTACAGTTGACAACAACTTTTGCACC
ATTAGGTAAAGTAGGGCAAAGTTTCTCTAGAAATGCTAATGCATGAGATG
CCTCAAGGGCCGGAAATATGCCTTCTAATCTGCACAGCCGTTGATATGCT
TGGACAGCTTCTTGGTCAGTCGCAGTGTAGAACTCCGCACGCCCAGTGTC
CCTAAGAAAGCTTATCTCCGGGCCAACTCCTGGATACTCTAGCCCTACAC
CGACAGAATGAGTCCCCAAGATTTGGCCTTCTTCATCTTGCAACAAGTAG
CTCATGGCTCCATGATAAACACCCACTTCCCCTTTAGCCAGAGTTGCAGC
GTGTTTGCCGCTGTCCAAGCCAAATCCAGCAGCCTCCACTCCAATCAATC
TCACATCTTCATCATTTATGAATTCATGAAACAAACCCAACGCATTTGAT
CCACTGCCCACACAAGCCAGCAATACATCAGGCTTGCCTCCCCATTTTTC
CATTGCTTGTTTTCTCGTTTCTTTGCCTATGATTGATTGAAATTCTCGTA
CCATTATTGGACACGGGTGAGGCCCCACCACCGTACCCGTTAAATAATAG
CTTTTTTCTAAGTTCCCCACCCAATTTCTGATAGCTTCTGAGCTTGCTTC
TTTGAAACATCCATCCACTGC
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