CX043276

Overview
NameCX043276
Unique NameCX043276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2462 contig Csv1_Contig2462:113..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PSESY (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. syringae GN=trpB PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 5.029e-72
Identity = 125/226 (55.31%), Postives = 171/226 (75.66%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G  K+A +EA+R+WV N+E ++YL GTV GPHP P MVR+FQ++IGKETR Q   + G  PD L+AC+G GSNA+GLFH F++D+ V +IGVEAAG G+++GKHAA+L  G  GV HG  ++LLQD++GQI+  HS+  GL+YPG+GPE ++L D GR ++ + TD EA+ A+ + CRLEGI PALE++HALA + K  PTLP    +VVN SG GDKD+ TV+++
Sbjct:  174 GTLKDAMNEALRDWVTNVEDTFYLIGTVAGPHPYPAMVRDFQAVIGKETRDQLQAQEGRLPDSLVACIGGGSNAMGLFHPFLDDKSVEIIGVEAAGHGIETGKHAASLNGGVPGVLHGNRTFLLQDDDGQIIDAHSISAGLDYPGIGPEHAWLHDIGRVQYTSVTDDEALDAFHKCCRLEGIIPALESAHALAEVFKRAPTLPKDHLMVVNLSGRGDKDMQTVMHH 399          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPW (Tryptophan synthase beta chain OS=Pseudomonas putida (strain W619) GN=trpB PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 5.029e-72
Identity = 129/226 (57.08%), Postives = 165/226 (73.01%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G  K+A +EA+R+WV N++ ++YL GTV GPHP P MVR+FQSIIGKETR Q  EK G  PD L+ACVG GSNA+GLFHEF+ DE V++IGVEA G G+++GKHAA+L  G  GV HG  +YLLQD++GQI   HS+  GL+YPG+GPE ++L +  R E+ + TD EA+ A+   CRLEGI PALE SHALA   K  P LP    +V+  SG GDKD+ TV+N+
Sbjct:  172 GTLKDAMNEALRDWVTNVDDTFYLIGTVAGPHPYPAMVRDFQSIIGKETRAQLQEKEGRLPDSLIACVGGGSNAMGLFHEFLEDESVKIIGVEAGGHGVNTGKHAASLNGGVPGVLHGNRTYLLQDDDGQITDAHSISAGLDYPGIGPEHAYLHEVKRVEYVSITDDEALDAFHATCRLEGIIPALETSHALAEAIKRAPNLPKDHLMVICLSGRGDKDMQTVMNH 397          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PSEF5 (Tryptophan synthase beta chain OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=trpB PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 5.029e-72
Identity = 124/226 (54.87%), Postives = 172/226 (76.11%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G  K+A +EA+R+WV N++ ++YL GTV GPHP P MVR+FQ++IGKETR+Q   + G  PD L+AC+G GSNA+GLFH F++D+ V +IGVEAAG+G+++GKHAA+L  G  GV HG  ++LLQD++GQI+  HS+  GL+YPG+GPE ++L D GR E+ + TD EA+ A+ + CRLEGI PALE++HALA + K  P LP    +VVN SG GDKD+ TV+++
Sbjct:  172 GTLKDAMNEALRDWVTNVDSTFYLIGTVAGPHPYPAMVRDFQAVIGKETREQMQAQEGRLPDSLVACIGGGSNAMGLFHPFLDDKSVEIIGVEAAGYGIETGKHAASLNGGVPGVLHGNRTFLLQDDDGQIIDAHSISAGLDYPGIGPEHAWLHDIGRVEYTSVTDDEALAAFHQCCRLEGIIPALESAHALAEVFKRAPNLPKDHLMVVNLSGRGDKDMQTVMHH 397          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_THEPX (Tryptophan synthase beta chain OS=Thermoanaerobacter sp. (strain X514) GN=trpB PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.120e-71
Identity = 125/223 (56.05%), Postives = 173/223 (77.58%), Query Frame = -1
Query:  144 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 812
            G  K+A +EAIR+WV N+  ++Y+ G+VVGPHP P MVR+FQ +IG E ++Q ++K G  PD ++ACVG GSNA+G+F+ FI D++V+LIGVEAAG G+++GKHAA +AKG VGV HG M+YLLQDEEG+I+  +S+  GL+YPGVGPE +FL+++ RA++  ATD+EA+ A+  L + EGI PALE++HALA+  KL P L     ++VN SG GDKDV+TV
Sbjct:  161 GTLKDAVNEAIRDWVTNINDTFYVIGSVVGPHPYPTMVRDFQRVIGDEAKEQILQKEGRLPDYVIACVGGGSNAMGIFYPFIEDKEVKLIGVEAAGEGIETGKHAAAMAKGSVGVLHGMMTYLLQDEEGRIMPVYSISAGLDYPGVGPEHAFLKESNRAQYVYATDEEALAAFMDLSQTEGIIPALESAHALAYAMKLAPNLTKDNIIIVNLSGRGDKDVNTV 383          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_THEP3 (Tryptophan synthase beta chain OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=trpB PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.911e-71
Identity = 124/220 (56.36%), Postives = 173/220 (78.64%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A +EAIR+WV N++ ++Y+ G+VVGPHP P MVR+FQ +IG E ++Q ++K G  PD ++ACVG GSNA+G+F+ FI D++V+LIGVEAAG G+++GKHAA +AKG VGV HG M+YLLQDEEG+I+  +S+  GL+YPGVGPE +FL+++ RA++  ATD+EA+ A+  L + EGI PALE++HALA+  KL P L     ++VN SG GDKDV+TV
Sbjct:  164 KDAVNEAIRDWVTNIDNTFYVIGSVVGPHPYPTMVRDFQRVIGDEAKEQILQKEGRLPDYVIACVGGGSNAMGIFYPFIEDKEVKLIGVEAAGEGIETGKHAAAMAKGSVGVLHGMMTYLLQDEEGRIMPVYSISAGLDYPGVGPEHAFLKESNRAQYVYATDEEALAAFMDLSQTEGIIPALESAHALAYAMKLAPNLTKDNIIIVNLSGRGDKDVNTV 383          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPF (Tryptophan synthase beta chain OS=Pseudomonas fluorescens (strain Pf0-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.496e-71
Identity = 123/226 (54.42%), Postives = 171/226 (75.66%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G  K+A +EA+R+WV N++ ++YL GTV GPHP P MVR+FQ++IGKETR Q   + G  PD L+AC+G GSNA+GLFH F++D+ V +IGVEAAG+G+++GKHAA+L  G  GV HG  ++LLQD++GQI+  HS+  GL+YPG+GPE ++L D GR ++ + TD EA+ A+ + CRLEGI PALE++HALA + K  P LP    +VVN SG GDKD+ TV+++
Sbjct:  176 GTLKDAMNEALRDWVTNVDSTFYLIGTVAGPHPYPAMVRDFQAVIGKETRDQLQAQEGRLPDSLVACIGGGSNAMGLFHPFLDDKSVEIIGVEAAGYGIETGKHAASLNGGVPGVLHGNRTFLLQDDDGQIIDAHSISAGLDYPGIGPEHAWLHDIGRVQYTSVTDDEALAAFHQCCRLEGIIPALESAHALAEVFKRAPKLPKDHLMVVNLSGRGDKDMQTVMHH 401          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PARL1 (Tryptophan synthase beta chain OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=trpB PE=3 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.259e-71
Identity = 125/226 (55.31%), Postives = 170/226 (75.22%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G  K+A +EA+R+WV N+E +YYL GTV GPHP P MVR+FQS+IG+ET+KQ +E+ G  PD L+AC+G GSNA+GLFH F++D  V++ GVEAAG GL++G+H A+L  G  GV HG  +YLLQD++GQI   HS+  GL+YPG+GPE ++L +TGRAE+ +ATD+EA+ A+Q   +LEGI PALE +HALAF+ K+   LP    +V+N  G GDKDV  V ++
Sbjct:  175 GTLKDAMNEALRDWVTNVENTYYLIGTVAGPHPYPAMVRDFQSVIGEETKKQMLEREGRLPDSLVACIGGGSNAMGLFHPFLDDPSVKIYGVEAAGHGLETGEHCASLKGGAPGVLHGNRTYLLQDDDGQIKDGHSISAGLDYPGIGPEHAWLHETGRAEYVSATDREALAAFQLCSKLEGIIPALEPAHALAFVTKIASALPKDHLMVMNMCGRGDKDVFAVADH 400          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_RALSO (Tryptophan synthase beta chain OS=Ralstonia solanacearum GN=trpB PE=3 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 4.257e-71
Identity = 126/220 (57.27%), Postives = 171/220 (77.73%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A +EA+R+WV N+  ++Y+ GTV GPHP P+MVR+FQ++IG+E + Q  E  G +PD ++ACVG GSNA+G+F+ +I+   V+LIGVEAAG GL+SG+HAA+L  G  GV HG  +YLLQDE+GQI+ THS+  GL+YPGVGPE ++L+D GRA++   TD+EA+QA+  LCR+EGI PALE+SHALA+  KL PTLP    ++VN SG GDKD+ TV
Sbjct:  176 KDALNEAMRDWVTNVADTFYIIGTVAGPHPYPMMVRDFQAVIGEECKVQMPELAGRQPDAVIACVGGGSNAMGIFYPYIDHASVQLIGVEAAGEGLESGRHAASLTGGSPGVLHGNRTYLLQDEDGQIIETHSISAGLDYPGVGPEHAWLKDAGRAQYVGITDKEALQAFHDLCRMEGIIPALESSHALAYACKLAPTLPKDKILLVNLSGRGDKDMHTV 395          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB1_ARCFU (Tryptophan synthase beta chain 1 OS=Archaeoglobus fulgidus GN=trpB1 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 5.560e-71
Identity = 124/220 (56.36%), Postives = 170/220 (77.27%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A +EA+R+WV + E ++YL G+VVGPHP P +VR+FQ++IGKE R+Q +E  GG PD ++ACVG GSNA+G+FH F+ND DVRLIGVEA G G++SG+H+A+L  G  GV HG +SY LQDEEG +L THSV  GL+YPGVGPE ++L++TGR E+ T  D+EA++A++ L +LEGI PALE++HA+A+  K+   +     +VVN SG GDKD+D V
Sbjct:  174 KDAINEALRDWVESFEHTHYLIGSVVGPHPFPTIVRDFQAVIGKEARRQIIEAEGGMPDAIIACVGGGSNAMGIFHPFLND-DVRLIGVEAGGEGIESGRHSASLTAGSKGVLHGMLSYFLQDEEGMMLDTHSVSAGLDYPGVGPEHAYLKETGRCEYVTVNDEEALRAFKTLSKLEGIIPALESAHAIAYAMKMAEEMQRDDVLVVNLSGRGDKDMDIV 392          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB1_PYRKO (Tryptophan synthase beta chain 1 OS=Pyrococcus kodakaraensis GN=trpB1 PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 7.261e-71
Identity = 125/220 (56.82%), Postives = 171/220 (77.73%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A +EA+R+WV   E S+YL G+VVGP+P P++VR+FQS+IG+E R+Q +E  G  PD ++ACVG GSNA+G+F+ F+ND  VRLIGVEA G GL++G HAA+L  GE+GV+HG +SY LQ+EEGQI  THSV  GL+YPGVGPE ++L+D+GRAE+ T TD+EA++A+  L R EGI PALE++HA+A+  K+ P +     ++VN SG GDKD+D V
Sbjct:  165 KDAINEALRDWVATFEYSHYLIGSVVGPYPYPVIVRDFQSVIGREAREQILEAEGTLPDAVVACVGGGSNAMGIFYPFVNDR-VRLIGVEAGGKGLETGLHAASLNAGELGVFHGMLSYFLQNEEGQITPTHSVSAGLDYPGVGPEHAYLKDSGRAEYVTVTDEEALRAFHELSRTEGILPALESAHAVAYAMKIAPEMDKDEIIIVNLSGRGDKDLDIV 383          
The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
TRPB_PSESY5.029e-7255.31Tryptophan synthase beta chain OS=Pseudomonas syri... [more]
TRPB_PSEPW5.029e-7257.08Tryptophan synthase beta chain OS=Pseudomonas puti... [more]
TRPB_PSEF55.029e-7254.87Tryptophan synthase beta chain OS=Pseudomonas fluo... [more]
TRPB_THEPX1.120e-7156.05Tryptophan synthase beta chain OS=Thermoanaerobact... [more]
TRPB_THEP31.911e-7156.36Tryptophan synthase beta chain OS=Thermoanaerobact... [more]
TRPB_PSEPF2.496e-7154.42Tryptophan synthase beta chain OS=Pseudomonas fluo... [more]
TRPB_PARL13.259e-7155.31Tryptophan synthase beta chain OS=Parvibaculum lav... [more]
TRPB_RALSO4.257e-7157.27Tryptophan synthase beta chain OS=Ralstonia solana... [more]
TRPB1_ARCFU5.560e-7156.36Tryptophan synthase beta chain 1 OS=Archaeoglobus ... [more]
TRPB1_PYRKO7.261e-7156.82Tryptophan synthase beta chain 1 OS=Pyrococcus kod... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTGAGAAAAATAGGTCTTAAATTAATAGATTTCTCGGGTTGCTGCT
AAATTGACGGGAACCCTTAAATATTGTGGTCACCACTTCTTCGATCCATT
ACAATTTCTACGTCGATAATTATTGATTGTATCTGTAATTGACGACCGTG
TCGACGTCCTTATCCCCACCTCCACTACAGTTGACAACAACTTTTGCACC
ATTAGGTAAAGTAGGGCAAAGTTTCTCTAGAAATGCTAATGCATGAGATG
CCTCAAGGGCCGGAAATATGCCTTCTAATCTGCACAGCCGTTGATATGCT
TGGACAGCTTCTTGGTCAGTCGCAGTGTAGAACTCCGCACGCCCAGTGTC
CCTAAGAAAGCTTATCTCCGGGCCAACTCCTGGATACTCTAGCCCTACAC
CGACAGAATGAGTCCCCAAGATTTGGCCTTCTTCATCTTGCAACAAGTAG
CTCATGGCTCCATGATAAACACCCACTTCCCCTTTAGCCAGAGTTGCAGC
GTGTTTGCCGCTGTCCAAGCCAAATCCAGCAGCCTCCACTCCAATCAATC
TCACATCTTCATCATTTATGAATTCATGAAACAAACCCAACGCATTTGAT
CCACTGCCCACACAAGCCAGCAATACATCAGGCTTGCCTCCCCATTTTTC
CATTGCTTGTTTTCTCGTTTCTTTGCCTATGATTGATTGAAATTCTCGTA
CCATTATTGGACACGGGTGAGGCCCCACCACCGTACCCGTTAAATAATAG
CTTTTTTCTAAGTTCCCCACCCAATTTCTGATAGCTTCTGAGCTTGCTTC
TTTGAAACATCCATCCACTGC
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