CX043276
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PSESY (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. syringae GN=trpB PE=3 SV=1) HSP 1 Score: 271.166 bits (692), Expect = 5.029e-72 Identity = 125/226 (55.31%), Postives = 171/226 (75.66%), Query Frame = -1 Query: 135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812 G K+A +EA+R+WV N+E ++YL GTV GPHP P MVR+FQ++IGKETR Q + G PD L+AC+G GSNA+GLFH F++D+ V +IGVEAAG G+++GKHAA+L G GV HG ++LLQD++GQI+ HS+ GL+YPG+GPE ++L D GR ++ + TD EA+ A+ + CRLEGI PALE++HALA + K PTLP +VVN SG GDKD+ TV+++ Sbjct: 174 GTLKDAMNEALRDWVTNVEDTFYLIGTVAGPHPYPAMVRDFQAVIGKETRDQLQAQEGRLPDSLVACIGGGSNAMGLFHPFLDDKSVEIIGVEAAGHGIETGKHAASLNGGVPGVLHGNRTFLLQDDDGQIIDAHSISAGLDYPGIGPEHAWLHDIGRVQYTSVTDDEALDAFHKCCRLEGIIPALESAHALAEVFKRAPTLPKDHLMVVNLSGRGDKDMQTVMHH 399
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPW (Tryptophan synthase beta chain OS=Pseudomonas putida (strain W619) GN=trpB PE=3 SV=1) HSP 1 Score: 271.166 bits (692), Expect = 5.029e-72 Identity = 129/226 (57.08%), Postives = 165/226 (73.01%), Query Frame = -1 Query: 135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812 G K+A +EA+R+WV N++ ++YL GTV GPHP P MVR+FQSIIGKETR Q EK G PD L+ACVG GSNA+GLFHEF+ DE V++IGVEA G G+++GKHAA+L G GV HG +YLLQD++GQI HS+ GL+YPG+GPE ++L + R E+ + TD EA+ A+ CRLEGI PALE SHALA K P LP +V+ SG GDKD+ TV+N+ Sbjct: 172 GTLKDAMNEALRDWVTNVDDTFYLIGTVAGPHPYPAMVRDFQSIIGKETRAQLQEKEGRLPDSLIACVGGGSNAMGLFHEFLEDESVKIIGVEAGGHGVNTGKHAASLNGGVPGVLHGNRTYLLQDDDGQITDAHSISAGLDYPGIGPEHAYLHEVKRVEYVSITDDEALDAFHATCRLEGIIPALETSHALAEAIKRAPNLPKDHLMVICLSGRGDKDMQTVMNH 397
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PSEF5 (Tryptophan synthase beta chain OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=trpB PE=3 SV=1) HSP 1 Score: 271.166 bits (692), Expect = 5.029e-72 Identity = 124/226 (54.87%), Postives = 172/226 (76.11%), Query Frame = -1 Query: 135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812 G K+A +EA+R+WV N++ ++YL GTV GPHP P MVR+FQ++IGKETR+Q + G PD L+AC+G GSNA+GLFH F++D+ V +IGVEAAG+G+++GKHAA+L G GV HG ++LLQD++GQI+ HS+ GL+YPG+GPE ++L D GR E+ + TD EA+ A+ + CRLEGI PALE++HALA + K P LP +VVN SG GDKD+ TV+++ Sbjct: 172 GTLKDAMNEALRDWVTNVDSTFYLIGTVAGPHPYPAMVRDFQAVIGKETREQMQAQEGRLPDSLVACIGGGSNAMGLFHPFLDDKSVEIIGVEAAGYGIETGKHAASLNGGVPGVLHGNRTFLLQDDDGQIIDAHSISAGLDYPGIGPEHAWLHDIGRVEYTSVTDDEALAAFHQCCRLEGIIPALESAHALAEVFKRAPNLPKDHLMVVNLSGRGDKDMQTVMHH 397
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_THEPX (Tryptophan synthase beta chain OS=Thermoanaerobacter sp. (strain X514) GN=trpB PE=3 SV=1) HSP 1 Score: 270.011 bits (689), Expect = 1.120e-71 Identity = 125/223 (56.05%), Postives = 173/223 (77.58%), Query Frame = -1 Query: 144 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 812 G K+A +EAIR+WV N+ ++Y+ G+VVGPHP P MVR+FQ +IG E ++Q ++K G PD ++ACVG GSNA+G+F+ FI D++V+LIGVEAAG G+++GKHAA +AKG VGV HG M+YLLQDEEG+I+ +S+ GL+YPGVGPE +FL+++ RA++ ATD+EA+ A+ L + EGI PALE++HALA+ KL P L ++VN SG GDKDV+TV Sbjct: 161 GTLKDAVNEAIRDWVTNINDTFYVIGSVVGPHPYPTMVRDFQRVIGDEAKEQILQKEGRLPDYVIACVGGGSNAMGIFYPFIEDKEVKLIGVEAAGEGIETGKHAAAMAKGSVGVLHGMMTYLLQDEEGRIMPVYSISAGLDYPGVGPEHAFLKESNRAQYVYATDEEALAAFMDLSQTEGIIPALESAHALAYAMKLAPNLTKDNIIIVNLSGRGDKDVNTV 383
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_THEP3 (Tryptophan synthase beta chain OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=trpB PE=3 SV=1) HSP 1 Score: 269.24 bits (687), Expect = 1.911e-71 Identity = 124/220 (56.36%), Postives = 173/220 (78.64%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A +EAIR+WV N++ ++Y+ G+VVGPHP P MVR+FQ +IG E ++Q ++K G PD ++ACVG GSNA+G+F+ FI D++V+LIGVEAAG G+++GKHAA +AKG VGV HG M+YLLQDEEG+I+ +S+ GL+YPGVGPE +FL+++ RA++ ATD+EA+ A+ L + EGI PALE++HALA+ KL P L ++VN SG GDKDV+TV Sbjct: 164 KDAVNEAIRDWVTNIDNTFYVIGSVVGPHPYPTMVRDFQRVIGDEAKEQILQKEGRLPDYVIACVGGGSNAMGIFYPFIEDKEVKLIGVEAAGEGIETGKHAAAMAKGSVGVLHGMMTYLLQDEEGRIMPVYSISAGLDYPGVGPEHAFLKESNRAQYVYATDEEALAAFMDLSQTEGIIPALESAHALAYAMKLAPNLTKDNIIIVNLSGRGDKDVNTV 383
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPF (Tryptophan synthase beta chain OS=Pseudomonas fluorescens (strain Pf0-1) GN=trpB PE=3 SV=1) HSP 1 Score: 268.855 bits (686), Expect = 2.496e-71 Identity = 123/226 (54.42%), Postives = 171/226 (75.66%), Query Frame = -1 Query: 135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812 G K+A +EA+R+WV N++ ++YL GTV GPHP P MVR+FQ++IGKETR Q + G PD L+AC+G GSNA+GLFH F++D+ V +IGVEAAG+G+++GKHAA+L G GV HG ++LLQD++GQI+ HS+ GL+YPG+GPE ++L D GR ++ + TD EA+ A+ + CRLEGI PALE++HALA + K P LP +VVN SG GDKD+ TV+++ Sbjct: 176 GTLKDAMNEALRDWVTNVDSTFYLIGTVAGPHPYPAMVRDFQAVIGKETRDQLQAQEGRLPDSLVACIGGGSNAMGLFHPFLDDKSVEIIGVEAAGYGIETGKHAASLNGGVPGVLHGNRTFLLQDDDGQIIDAHSISAGLDYPGIGPEHAWLHDIGRVQYTSVTDDEALAAFHQCCRLEGIIPALESAHALAEVFKRAPKLPKDHLMVVNLSGRGDKDMQTVMHH 401
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PARL1 (Tryptophan synthase beta chain OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=trpB PE=3 SV=1) HSP 1 Score: 268.47 bits (685), Expect = 3.259e-71 Identity = 125/226 (55.31%), Postives = 170/226 (75.22%), Query Frame = -1 Query: 135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812 G K+A +EA+R+WV N+E +YYL GTV GPHP P MVR+FQS+IG+ET+KQ +E+ G PD L+AC+G GSNA+GLFH F++D V++ GVEAAG GL++G+H A+L G GV HG +YLLQD++GQI HS+ GL+YPG+GPE ++L +TGRAE+ +ATD+EA+ A+Q +LEGI PALE +HALAF+ K+ LP +V+N G GDKDV V ++ Sbjct: 175 GTLKDAMNEALRDWVTNVENTYYLIGTVAGPHPYPAMVRDFQSVIGEETKKQMLEREGRLPDSLVACIGGGSNAMGLFHPFLDDPSVKIYGVEAAGHGLETGEHCASLKGGAPGVLHGNRTYLLQDDDGQIKDGHSISAGLDYPGIGPEHAWLHETGRAEYVSATDREALAAFQLCSKLEGIIPALEPAHALAFVTKIASALPKDHLMVMNMCGRGDKDVFAVADH 400
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_RALSO (Tryptophan synthase beta chain OS=Ralstonia solanacearum GN=trpB PE=3 SV=1) HSP 1 Score: 268.085 bits (684), Expect = 4.257e-71 Identity = 126/220 (57.27%), Postives = 171/220 (77.73%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A +EA+R+WV N+ ++Y+ GTV GPHP P+MVR+FQ++IG+E + Q E G +PD ++ACVG GSNA+G+F+ +I+ V+LIGVEAAG GL+SG+HAA+L G GV HG +YLLQDE+GQI+ THS+ GL+YPGVGPE ++L+D GRA++ TD+EA+QA+ LCR+EGI PALE+SHALA+ KL PTLP ++VN SG GDKD+ TV Sbjct: 176 KDALNEAMRDWVTNVADTFYIIGTVAGPHPYPMMVRDFQAVIGEECKVQMPELAGRQPDAVIACVGGGSNAMGIFYPYIDHASVQLIGVEAAGEGLESGRHAASLTGGSPGVLHGNRTYLLQDEDGQIIETHSISAGLDYPGVGPEHAWLKDAGRAQYVGITDKEALQAFHDLCRMEGIIPALESSHALAYACKLAPTLPKDKILLVNLSGRGDKDMHTV 395
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB1_ARCFU (Tryptophan synthase beta chain 1 OS=Archaeoglobus fulgidus GN=trpB1 PE=3 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 5.560e-71 Identity = 124/220 (56.36%), Postives = 170/220 (77.27%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A +EA+R+WV + E ++YL G+VVGPHP P +VR+FQ++IGKE R+Q +E GG PD ++ACVG GSNA+G+FH F+ND DVRLIGVEA G G++SG+H+A+L G GV HG +SY LQDEEG +L THSV GL+YPGVGPE ++L++TGR E+ T D+EA++A++ L +LEGI PALE++HA+A+ K+ + +VVN SG GDKD+D V Sbjct: 174 KDAINEALRDWVESFEHTHYLIGSVVGPHPFPTIVRDFQAVIGKEARRQIIEAEGGMPDAIIACVGGGSNAMGIFHPFLND-DVRLIGVEAGGEGIESGRHSASLTAGSKGVLHGMLSYFLQDEEGMMLDTHSVSAGLDYPGVGPEHAYLKETGRCEYVTVNDEEALRAFKTLSKLEGIIPALESAHAIAYAMKMAEEMQRDDVLVVNLSGRGDKDMDIV 392
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB1_PYRKO (Tryptophan synthase beta chain 1 OS=Pyrococcus kodakaraensis GN=trpB1 PE=3 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 7.261e-71 Identity = 125/220 (56.82%), Postives = 171/220 (77.73%), Query Frame = -1 Query: 144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803 K+A +EA+R+WV E S+YL G+VVGP+P P++VR+FQS+IG+E R+Q +E G PD ++ACVG GSNA+G+F+ F+ND VRLIGVEA G GL++G HAA+L GE+GV+HG +SY LQ+EEGQI THSV GL+YPGVGPE ++L+D+GRAE+ T TD+EA++A+ L R EGI PALE++HA+A+ K+ P + ++VN SG GDKD+D V Sbjct: 165 KDAINEALRDWVATFEYSHYLIGSVVGPYPYPVIVRDFQSVIGREAREQILEAEGTLPDAVVACVGGGSNAMGIFYPFVNDR-VRLIGVEAGGKGLETGLHAASLNAGELGVFHGMLSYFLQNEEGQITPTHSVSAGLDYPGVGPEHAYLKDSGRAEYVTVTDEEALRAFHELSRTEGILPALESAHAVAYAMKIAPEMDKDEIIIVNLSGRGDKDLDIV 383 The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 441
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bpback to top |