CX043276
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_CLOBB (Tryptophan synthase beta chain OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=trpB PE=3 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 1.205e-49 Identity = 101/228 (44.30%), Postives = 147/228 (64.47%), Query Frame = -1 Query: 123 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVV-NYRYNQ 803 KEA A ++ N + S Y G+ +GPHP P+MVR+FQ+++G E + Q E G PDV+ ACVG GSNA G+F F+ +E V +IG+E G G G HAA++ GE GV HG S +L+D+ G +S+ GL+YP VGPE +FLR+ GR ++ D+EA++A+ +L R EGI PA+E+SHA+A+ K + G+ ++V SG GDKD+D +V +Y Y + Sbjct: 176 KEAVDSAFDSYAKNYKDSIYCIGSALGPHPFPLMVRDFQAVVGYEAKDQFKEMTGFLPDVVTACVGGGSNAAGMFIPFL-EEPVDIIGIEPLGRGEKLGDHAASMKYGEKGVMHGFESIMLKDKNGDPAPVYSIASGLDYPSVGPEHAFLRELGRVDYKVINDEEAMEAFFKLSRYEGIIPAIESSHAVAYAMKKAEEMKQGS-ILVCLSGRGDKDIDYIVEHYGYGE 401
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_AZOPC (Tryptophan synthase beta chain OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=trpB PE=3 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 3.507e-49 Identity = 99/220 (45.00%), Postives = 140/220 (63.64%), Query Frame = -1 Query: 147 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGK-PDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDT 803 K+A++EAIR+W N + ++Y+ G+ VGPHP P MV FQSII KE + Q EK PD L+AC+G GSNA G +E++ D V++I EAAG G+ SG AAT+ G++G+ HG+ + ++Q +GQI +S+ GL+YPG+GP + + GR+E D EA+ A L RLEGI PALE++HAL +K +VV SG GDKD++T Sbjct: 176 KDATNEAIRDWCSNPDDTHYIIGSTVGPHPYPDMVARFQSIISKEIKSQLPEKENRNYPDYLIACIGGGSNAAGTIYEYLYDNRVKIILAEAAGQGIHSGHSAATIHLGKIGIIHGSKTLIMQTSDGQIEEPYSISAGLDYPGIGPMHAHIAKQGRSEILAIDDNEALSAAMELTRLEGIIPALESAHALGIFQK--KQFKTNDVIVVCLSGRGDKDMET 393
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_HALSA (Tryptophan synthase beta chain OS=Halobacterium salinarium GN=trpB PE=3 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 1.333e-48 Identity = 110/244 (45.08%), Postives = 147/244 (60.25%), Query Frame = -1 Query: 141 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDE--------------DVRLIGVEAAGFGL----DSG--KHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVV 812 G KEA +E +R+W N+ ++Y+ G+VVGPHP P MVR+FQ+II +E R Q+ E+ G P ++AC G GSN +G F F+ DV L+ VEA G L D+G ++A+L+ G GV HGA + LLQ E GQI+ +HSV GL+Y GVGPE++ L DTGR D A+ A+ RL R EG+ PALE SHA+A L++ VVVN SG GDKD+DTV+ Sbjct: 172 GTLKEAINETMRDWATNVADTHYVIGSVVGPHPFPSMVRDFQAIISEELRAQSREQLGELPAAVIACAGGGSNTMGAFGAFVGSASLPGAPAGTHEPAPDVDLLAVEAGGSRLGVDDDAGYAPNSASLSTGTEGVLHGARTKLLQTETGQIVESHSVSAGLDYAGVGPELAHLVDTGRITPTNVDDDAALAAFHRLSRDEGVIPALETSHAVAALDQ----YDGDGPVVVNVSGRGDKDLDTVI 411
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_HALS3 (Tryptophan synthase beta chain OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=trpB PE=3 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 1.333e-48 Identity = 110/244 (45.08%), Postives = 147/244 (60.25%), Query Frame = -1 Query: 141 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDE--------------DVRLIGVEAAGFGL----DSG--KHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVV 812 G KEA +E +R+W N+ ++Y+ G+VVGPHP P MVR+FQ+II +E R Q+ E+ G P ++AC G GSN +G F F+ DV L+ VEA G L D+G ++A+L+ G GV HGA + LLQ E GQI+ +HSV GL+Y GVGPE++ L DTGR D A+ A+ RL R EG+ PALE SHA+A L++ VVVN SG GDKD+DTV+ Sbjct: 172 GTLKEAINETMRDWATNVADTHYVIGSVVGPHPFPSMVRDFQAIISEELRAQSREQLGELPAAVIACAGGGSNTMGAFGAFVGSASLPGAPAGTHEPAPDVDLLAVEAGGSRLGVDDDAGYAPNSASLSTGTEGVLHGARTKLLQTETGQIVESHSVSAGLDYAGVGPELAHLVDTGRITPTNVDDDAALAAFHRLSRDEGVIPALETSHAVAALDQ----YDGDGPVVVNVSGRGDKDLDTVI 411
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_BACV8 (Tryptophan synthase beta chain OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=trpB PE=3 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 3.877e-48 Identity = 100/220 (45.45%), Postives = 145/220 (65.91%), Query Frame = -1 Query: 147 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGK-PDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDT 803 K+A++EAIR+W + +YY+ G+ VGPHP P MV QS+I +E +KQ E+ G + PD L+ACVG GSNA G + +I+DE V+++ EA G G+D+G AAT+ G++G+ HGA + ++Q+E+GQI +S+ GL+YPG+GP + L RA D EA++A L RLEGI PALE++HAL L+K+ VV+ SG GDKD++T Sbjct: 170 KDATNEAIRDWCCHPADTYYVIGSTVGPHPYPDMVARLQSVISEEIKKQLKEQEGREYPDYLMACVGGGSNAAGTIYHYIDDERVQIVLAEAGGKGIDTGFSAATIQLGKMGIIHGAKTLVIQNEDGQIEEPYSISAGLDYPGIGPMHANLAKQQRALVLAINDDEAIRAAFELTRLEGIIPALESAHALGALDKM--RFKPTDIVVLTVSGRGDKDIET 387
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_BUCRP (Tryptophan synthase beta chain (Fragment) OS=Buchnera aphidicola subsp. Rhopalosiphum padi GN=trpB PE=3 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 4.287e-47 Identity = 89/178 (50.00%), Postives = 126/178 (70.79%), Query Frame = -1 Query: 279 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCR 812 G K+A +EA+R+W N +KS+Y+ GT GPHP P +V+EFQ +IG+E +KQ +E+ PD ++ACVG GSNA+G+F +FI DE V LIGVE AG G+++GKH A L G G+Y G S+L+Q +EGQI + SV GL++P VGPE S+L RA++ + TD EA++A+Q L + Sbjct: 48 GTLKDACNEALRDWSRNYQKSHYMIGTAAGPHPYPTIVKEFQKMIGEEAKKQILEQENRLPDAIIACVGGGSNAIGIFSDFI-DEKVNLIGVEPAGKGIETGKHGAPLTHGRTGIYFGMKSHLMQSQEGQIEKSWSVSAGLDFPSVGPEHSWLNSINRAKYVSVTDIEALEAFQILSK 224
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_BUCRM (Tryptophan synthase beta chain (Fragment) OS=Buchnera aphidicola subsp. Rhopalosiphum maidis GN=trpB PE=3 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.629e-46 Identity = 88/178 (49.44%), Postives = 127/178 (71.35%), Query Frame = -1 Query: 279 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCR 812 G K+A +EA+R+W GN +KS+Y+ GT GPHP P +V+EFQ +IG+E +KQ +E+ PD ++ACVG GSNA+G+F EF+N E V LIGVE AG G+++GKH A L G G+Y G S L+Q++EGQI + S+ GL++P VGPE ++L RA++ + TD EA++A+Q L + Sbjct: 48 GTLKDACNEALRDWSGNYQKSHYIIGTAAGPHPYPTIVKEFQKMIGEEAKKQILEQEKKLPDAIIACVGGGSNAIGIFSEFMN-EKVDLIGVEPAGRGIETGKHGAPLNHGRTGIYFGMKSSLMQNQEGQIEKSWSISAGLDFPSVGPEHAWLHSINRAQYVSITDIEALEAFQILSK 224
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PYRAR (Tryptophan synthase beta chain OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=trpB PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.030e-16 Identity = 71/228 (31.14%), Postives = 105/228 (46.05%), Query Frame = -1 Query: 150 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEG--QILGTHSVG----------VGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVD 797 A SEA+ +V + EK +YL G+V+ V Q++IG E +Q E+ PD +ACVG GSN G + +IG++ G G D + A A+ + G Y D G ++ +++G GL Y G P +S LR G E + +E ++A R EGI PA E++HA+ + L LP G+ + N SG G D D Sbjct: 195 AISEAVE-YVLSGEKRHYLPGSVLE------FVLMHQTVIGLEAVRQLPEE----PDAAVACVGGGSNFAGFTYP--------MIGMKLRGEGFDKTRFVAVEAEAAPKLTKGEYKYDFPDAVGILPMIKMYTLGHDYVPPPVHAAGLRYHGAAPSLSLLRKLGIVEPLSYPQEEVMKAAVLFARTEGIVPAPESAHAIRAVLDLAKKLPRGSVIAFNLSGHGLLDSD 403
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB1_AERPE (Tryptophan synthase beta chain 1 OS=Aeropyrum pernix GN=trpB1 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.913e-16 Identity = 69/206 (33.50%), Postives = 95/206 (46.12%), Query Frame = -1 Query: 144 YLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTH-----SVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 746 YL G+V+ V Q++IG E Q E+ PDV++ACVG GSN G + I +R G E F A L +GE S +L + LG S GL Y GV P +S LR G E +EA+ + + R EG+ PA E+SHA+A ++ LP+G+ V N SG G D+D + Sbjct: 221 YLPGSVLEA------VLMHQTVIGLEALDQLPEE----PDVVVACVGGGSNFGGFTYPMIGAR-LRGEGFEKTRFIAAESTAAPKLTRGEYRYDGLDSSLILPLAKMYTLGHRYTPPPSHAAGLRYHGVSPSLSILRRLGLVEAEAIPQEEALASILLMARSEGVVPAPESSHAVALAARIARKLPDGSVVAFNLSGHGLLDLDAL 415
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PYRAE (Tryptophan synthase beta chain OS=Pyrobaculum aerophilum GN=trpB PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.536e-15 Identity = 70/228 (30.70%), Postives = 102/228 (44.74%), Query Frame = -1 Query: 150 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQI--LGTHSVG----------VGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVD 797 A SEA+ +V + E+ YL G+V+ V Q++IG E +Q E+ PDV +ACVG GSN G + +IG++ G G + A ++ + G Y D G + L +++G GL Y G P +S LR G E +E ++A R EGI PA E++HA+ L LP G+ + N SG G D D Sbjct: 195 AISEAVE-YVLSGERRKYLPGSVME------FVLLHQTVIGLEAVRQLPEE----PDVAVACVGGGSNFAGFTYP--------MIGMKLRGEGFGRTRFVAVESEAAPKLTRGEYKYDFPDAVGVLPMLKMYTLGHDYVPPAIHAAGLRYHGAAPSLSLLRKLGIVEAVAYPQEEVMRAALLFARTEGIVPAPESAHAIKAAVDLAKKLPRGSVIAFNLSGHGLLDSD 403 The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 441
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bpback to top |