CX043276

Overview
NameCX043276
Unique NameCX043276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_CLOBB (Tryptophan synthase beta chain OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=trpB PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.205e-49
Identity = 101/228 (44.30%), Postives = 147/228 (64.47%), Query Frame = -1
Query:  123 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVV-NYRYNQ 803
            KEA   A  ++  N + S Y  G+ +GPHP P+MVR+FQ+++G E + Q  E  G  PDV+ ACVG GSNA G+F  F+ +E V +IG+E  G G   G HAA++  GE GV HG  S +L+D+ G     +S+  GL+YP VGPE +FLR+ GR ++    D+EA++A+ +L R EGI PA+E+SHA+A+  K    +  G+ ++V  SG GDKD+D +V +Y Y +
Sbjct:  176 KEAVDSAFDSYAKNYKDSIYCIGSALGPHPFPLMVRDFQAVVGYEAKDQFKEMTGFLPDVVTACVGGGSNAAGMFIPFL-EEPVDIIGIEPLGRGEKLGDHAASMKYGEKGVMHGFESIMLKDKNGDPAPVYSIASGLDYPSVGPEHAFLRELGRVDYKVINDEEAMEAFFKLSRYEGIIPAIESSHAVAYAMKKAEEMKQGS-ILVCLSGRGDKDIDYIVEHYGYGE 401          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_AZOPC (Tryptophan synthase beta chain OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=trpB PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.507e-49
Identity = 99/220 (45.00%), Postives = 140/220 (63.64%), Query Frame = -1
Query:  147 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGK-PDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDT 803
            K+A++EAIR+W  N + ++Y+ G+ VGPHP P MV  FQSII KE + Q  EK     PD L+AC+G GSNA G  +E++ D  V++I  EAAG G+ SG  AAT+  G++G+ HG+ + ++Q  +GQI   +S+  GL+YPG+GP  + +   GR+E     D EA+ A   L RLEGI PALE++HAL   +K          +VV  SG GDKD++T
Sbjct:  176 KDATNEAIRDWCSNPDDTHYIIGSTVGPHPYPDMVARFQSIISKEIKSQLPEKENRNYPDYLIACIGGGSNAAGTIYEYLYDNRVKIILAEAAGQGIHSGHSAATIHLGKIGIIHGSKTLIMQTSDGQIEEPYSISAGLDYPGIGPMHAHIAKQGRSEILAIDDNEALSAAMELTRLEGIIPALESAHALGIFQK--KQFKTNDVIVVCLSGRGDKDMET 393          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_HALSA (Tryptophan synthase beta chain OS=Halobacterium salinarium GN=trpB PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.333e-48
Identity = 110/244 (45.08%), Postives = 147/244 (60.25%), Query Frame = -1
Query:  141 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDE--------------DVRLIGVEAAGFGL----DSG--KHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVV 812
            G  KEA +E +R+W  N+  ++Y+ G+VVGPHP P MVR+FQ+II +E R Q+ E+ G  P  ++AC G GSN +G F  F+                 DV L+ VEA G  L    D+G   ++A+L+ G  GV HGA + LLQ E GQI+ +HSV  GL+Y GVGPE++ L DTGR       D  A+ A+ RL R EG+ PALE SHA+A L++          VVVN SG GDKD+DTV+
Sbjct:  172 GTLKEAINETMRDWATNVADTHYVIGSVVGPHPFPSMVRDFQAIISEELRAQSREQLGELPAAVIACAGGGSNTMGAFGAFVGSASLPGAPAGTHEPAPDVDLLAVEAGGSRLGVDDDAGYAPNSASLSTGTEGVLHGARTKLLQTETGQIVESHSVSAGLDYAGVGPELAHLVDTGRITPTNVDDDAALAAFHRLSRDEGVIPALETSHAVAALDQ----YDGDGPVVVNVSGRGDKDLDTVI 411          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_HALS3 (Tryptophan synthase beta chain OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=trpB PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.333e-48
Identity = 110/244 (45.08%), Postives = 147/244 (60.25%), Query Frame = -1
Query:  141 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDE--------------DVRLIGVEAAGFGL----DSG--KHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVV 812
            G  KEA +E +R+W  N+  ++Y+ G+VVGPHP P MVR+FQ+II +E R Q+ E+ G  P  ++AC G GSN +G F  F+                 DV L+ VEA G  L    D+G   ++A+L+ G  GV HGA + LLQ E GQI+ +HSV  GL+Y GVGPE++ L DTGR       D  A+ A+ RL R EG+ PALE SHA+A L++          VVVN SG GDKD+DTV+
Sbjct:  172 GTLKEAINETMRDWATNVADTHYVIGSVVGPHPFPSMVRDFQAIISEELRAQSREQLGELPAAVIACAGGGSNTMGAFGAFVGSASLPGAPAGTHEPAPDVDLLAVEAGGSRLGVDDDAGYAPNSASLSTGTEGVLHGARTKLLQTETGQIVESHSVSAGLDYAGVGPELAHLVDTGRITPTNVDDDAALAAFHRLSRDEGVIPALETSHAVAALDQ----YDGDGPVVVNVSGRGDKDLDTVI 411          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_BACV8 (Tryptophan synthase beta chain OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=trpB PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.877e-48
Identity = 100/220 (45.45%), Postives = 145/220 (65.91%), Query Frame = -1
Query:  147 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGK-PDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDT 803
            K+A++EAIR+W  +   +YY+ G+ VGPHP P MV   QS+I +E +KQ  E+ G + PD L+ACVG GSNA G  + +I+DE V+++  EA G G+D+G  AAT+  G++G+ HGA + ++Q+E+GQI   +S+  GL+YPG+GP  + L    RA      D EA++A   L RLEGI PALE++HAL  L+K+         VV+  SG GDKD++T
Sbjct:  170 KDATNEAIRDWCCHPADTYYVIGSTVGPHPYPDMVARLQSVISEEIKKQLKEQEGREYPDYLMACVGGGSNAAGTIYHYIDDERVQIVLAEAGGKGIDTGFSAATIQLGKMGIIHGAKTLVIQNEDGQIEEPYSISAGLDYPGIGPMHANLAKQQRALVLAINDDEAIRAAFELTRLEGIIPALESAHALGALDKM--RFKPTDIVVLTVSGRGDKDIET 387          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_BUCRP (Tryptophan synthase beta chain (Fragment) OS=Buchnera aphidicola subsp. Rhopalosiphum padi GN=trpB PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.287e-47
Identity = 89/178 (50.00%), Postives = 126/178 (70.79%), Query Frame = -1
Query:  279 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCR 812
            G  K+A +EA+R+W  N +KS+Y+ GT  GPHP P +V+EFQ +IG+E +KQ +E+    PD ++ACVG GSNA+G+F +FI DE V LIGVE AG G+++GKH A L  G  G+Y G  S+L+Q +EGQI  + SV  GL++P VGPE S+L    RA++ + TD EA++A+Q L +
Sbjct:   48 GTLKDACNEALRDWSRNYQKSHYMIGTAAGPHPYPTIVKEFQKMIGEEAKKQILEQENRLPDAIIACVGGGSNAIGIFSDFI-DEKVNLIGVEPAGKGIETGKHGAPLTHGRTGIYFGMKSHLMQSQEGQIEKSWSVSAGLDFPSVGPEHSWLNSINRAKYVSVTDIEALEAFQILSK 224          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_BUCRM (Tryptophan synthase beta chain (Fragment) OS=Buchnera aphidicola subsp. Rhopalosiphum maidis GN=trpB PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.629e-46
Identity = 88/178 (49.44%), Postives = 127/178 (71.35%), Query Frame = -1
Query:  279 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCR 812
            G  K+A +EA+R+W GN +KS+Y+ GT  GPHP P +V+EFQ +IG+E +KQ +E+    PD ++ACVG GSNA+G+F EF+N E V LIGVE AG G+++GKH A L  G  G+Y G  S L+Q++EGQI  + S+  GL++P VGPE ++L    RA++ + TD EA++A+Q L +
Sbjct:   48 GTLKDACNEALRDWSGNYQKSHYIIGTAAGPHPYPTIVKEFQKMIGEEAKKQILEQEKKLPDAIIACVGGGSNAIGIFSEFMN-EKVDLIGVEPAGRGIETGKHGAPLNHGRTGIYFGMKSSLMQNQEGQIEKSWSISAGLDFPSVGPEHAWLHSINRAQYVSITDIEALEAFQILSK 224          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PYRAR (Tryptophan synthase beta chain OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=trpB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.030e-16
Identity = 71/228 (31.14%), Postives = 105/228 (46.05%), Query Frame = -1
Query:  150 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEG--QILGTHSVG----------VGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVD 797
            A SEA+  +V + EK +YL G+V+        V   Q++IG E  +Q  E+    PD  +ACVG GSN  G  +         +IG++  G G D  +  A  A+    +  G   Y   D  G   ++  +++G           GL Y G  P +S LR  G  E  +   +E ++A     R EGI PA E++HA+  +  L   LP G+ +  N SG G  D D
Sbjct:  195 AISEAVE-YVLSGEKRHYLPGSVLE------FVLMHQTVIGLEAVRQLPEE----PDAAVACVGGGSNFAGFTYP--------MIGMKLRGEGFDKTRFVAVEAEAAPKLTKGEYKYDFPDAVGILPMIKMYTLGHDYVPPPVHAAGLRYHGAAPSLSLLRKLGIVEPLSYPQEEVMKAAVLFARTEGIVPAPESAHAIRAVLDLAKKLPRGSVIAFNLSGHGLLDSD 403          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB1_AERPE (Tryptophan synthase beta chain 1 OS=Aeropyrum pernix GN=trpB1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.913e-16
Identity = 69/206 (33.50%), Postives = 95/206 (46.12%), Query Frame = -1
Query:  144 YLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTH-----SVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 746
            YL G+V+        V   Q++IG E   Q  E+    PDV++ACVG GSN  G  +  I    +R  G E   F       A  L +GE        S +L   +   LG       S   GL Y GV P +S LR  G  E      +EA+ +   + R EG+ PA E+SHA+A   ++   LP+G+ V  N SG G  D+D +
Sbjct:  221 YLPGSVLEA------VLMHQTVIGLEALDQLPEE----PDVVVACVGGGSNFGGFTYPMIGAR-LRGEGFEKTRFIAAESTAAPKLTRGEYRYDGLDSSLILPLAKMYTLGHRYTPPPSHAAGLRYHGVSPSLSILRRLGLVEAEAIPQEEALASILLMARSEGVVPAPESSHAVALAARIARKLPDGSVVAFNLSGHGLLDLDAL 415          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PYRAE (Tryptophan synthase beta chain OS=Pyrobaculum aerophilum GN=trpB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.536e-15
Identity = 70/228 (30.70%), Postives = 102/228 (44.74%), Query Frame = -1
Query:  150 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQI--LGTHSVG----------VGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVD 797
            A SEA+  +V + E+  YL G+V+        V   Q++IG E  +Q  E+    PDV +ACVG GSN  G  +         +IG++  G G    +  A  ++    +  G   Y   D  G +  L  +++G           GL Y G  P +S LR  G  E      +E ++A     R EGI PA E++HA+     L   LP G+ +  N SG G  D D
Sbjct:  195 AISEAVE-YVLSGERRKYLPGSVME------FVLLHQTVIGLEAVRQLPEE----PDVAVACVGGGSNFAGFTYP--------MIGMKLRGEGFGRTRFVAVESEAAPKLTRGEYKYDFPDAVGVLPMLKMYTLGHDYVPPAIHAAGLRYHGAAPSLSLLRKLGIVEAVAYPQEEVMRAALLFARTEGIVPAPESAHAIKAAVDLAKKLPRGSVIAFNLSGHGLLDSD 403          
The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
TRPB_CLOBB1.205e-4944.30Tryptophan synthase beta chain OS=Clostridium botu... [more]
TRPB_AZOPC3.507e-4945.00Tryptophan synthase beta chain OS=Azobacteroides p... [more]
TRPB_HALSA1.333e-4845.08Tryptophan synthase beta chain OS=Halobacterium sa... [more]
TRPB_HALS31.333e-4845.08Tryptophan synthase beta chain OS=Halobacterium sa... [more]
TRPB_BACV83.877e-4845.45Tryptophan synthase beta chain OS=Bacteroides vulg... [more]
TRPB_BUCRP4.287e-4750.00Tryptophan synthase beta chain (Fragment) OS=Buchn... [more]
TRPB_BUCRM1.629e-4649.44Tryptophan synthase beta chain (Fragment) OS=Buchn... [more]
TRPB_PYRAR1.030e-1631.14Tryptophan synthase beta chain OS=Pyrobaculum arse... [more]
TRPB1_AERPE3.913e-1633.50Tryptophan synthase beta chain 1 OS=Aeropyrum pern... [more]
TRPB_PYRAE2.536e-1530.70Tryptophan synthase beta chain OS=Pyrobaculum aero... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTGAGAAAAATAGGTCTTAAATTAATAGATTTCTCGGGTTGCTGCT
AAATTGACGGGAACCCTTAAATATTGTGGTCACCACTTCTTCGATCCATT
ACAATTTCTACGTCGATAATTATTGATTGTATCTGTAATTGACGACCGTG
TCGACGTCCTTATCCCCACCTCCACTACAGTTGACAACAACTTTTGCACC
ATTAGGTAAAGTAGGGCAAAGTTTCTCTAGAAATGCTAATGCATGAGATG
CCTCAAGGGCCGGAAATATGCCTTCTAATCTGCACAGCCGTTGATATGCT
TGGACAGCTTCTTGGTCAGTCGCAGTGTAGAACTCCGCACGCCCAGTGTC
CCTAAGAAAGCTTATCTCCGGGCCAACTCCTGGATACTCTAGCCCTACAC
CGACAGAATGAGTCCCCAAGATTTGGCCTTCTTCATCTTGCAACAAGTAG
CTCATGGCTCCATGATAAACACCCACTTCCCCTTTAGCCAGAGTTGCAGC
GTGTTTGCCGCTGTCCAAGCCAAATCCAGCAGCCTCCACTCCAATCAATC
TCACATCTTCATCATTTATGAATTCATGAAACAAACCCAACGCATTTGAT
CCACTGCCCACACAAGCCAGCAATACATCAGGCTTGCCTCCCCATTTTTC
CATTGCTTGTTTTCTCGTTTCTTTGCCTATGATTGATTGAAATTCTCGTA
CCATTATTGGACACGGGTGAGGCCCCACCACCGTACCCGTTAAATAATAG
CTTTTTTCTAAGTTCCCCACCCAATTTCTGATAGCTTCTGAGCTTGCTTC
TTTGAAACATCCATCCACTGC
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