CX043276

Overview
NameCX043276
Unique NameCX043276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PYRIL (Tryptophan synthase beta chain OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=trpB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.651e-15
Identity = 69/228 (30.26%), Postives = 102/228 (44.74%), Query Frame = -1
Query:  150 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEG--QILGTHSVG----------VGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVD 797
            A SEA+  +V + E+  YL G+V+        V   Q++IG E  +Q  E+    PD  +ACVG GSN  G  +         ++G +  G G    K  A  +     +  G   Y   D  G   ++  +++G           GL Y G  P +S L+  G  E      +E ++A     R EG+ PA E++HA+  +  L   LP G+ VV N SG G  DVD
Sbjct:  195 AISEAVE-YVLSGERRKYLPGSVME------FVLLHQTVIGLEAMRQLPEE----PDYAVACVGGGSNFGGFTYP--------MLGAKLRGEGFGKTKFLAVESAAAPKLTRGEYRYDFPDATGILPLIKMYTLGHDYVPPPVHAAGLRYHGAAPSLSLLKRLGHVEAVAYGQEEVMEAALLFARSEGVLPAPESAHAVRAVIYLAKKLPPGSVVVFNMSGHGLLDVD 403          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB2_ARCFU (Tryptophan synthase beta chain 2 OS=Archaeoglobus fulgidus GN=trpB2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.010e-12
Identity = 76/232 (32.76%), Postives = 102/232 (43.97%), Query Frame = -1
Query:  135 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDE---DVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSV-----GVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHAL--AFLEKLCPTLPNGAKVVV-NCSGGGDKDVDTVVNY 797
            A SEAI +   N E + Y  G+V+        V   Q++IG ET+ Q +EK   KPDVL+ CVG GSN  GL + F+ND    D+ +I VE A           TL  GE     G ++ L    +   LG   +       GL Y G  P +  L   G  +          +A     R EGI PA E +HA+  A  E +     N  KV+V   SG G  D+    +Y
Sbjct:  212 AISEAIEDAAKN-ENTKYSLGSVLNH------VLLHQTVIGLETKAQ-LEKVDEKPDVLIGCVGGGSNFAGLTYPFVNDAKNGDLEIIAVEPAA--------CPTLTAGEYKYDFGDVAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGDAPTLCMLVKHGVIKARAVKQLPTFEAGLLFARTEGIIPAPETNHAVRAAIDEAIKARENNEEKVIVFGFSGHGLLDLQAYDDY 427          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_FERNB (Tryptophan synthase beta chain OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=trpB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.625e-12
Identity = 68/229 (29.69%), Postives = 108/229 (47.16%), Query Frame = -1
Query:  138 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSN----ALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSV-----GVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 797
            A SEAI   +   +  Y L G+V+        V   Q+IIG E +KQ +E  G KPD+++AC G GSN    AL    + ++ ++++++ VE         +   +L KGE     G  + L    +   LG   V       GL Y G  P +S L      +  + T +E  +A +   +LEGI PA E++HA+A++ K      +   +V   SG G  D++  +N
Sbjct:  205 AISEAIHTVLNEKDAKYSL-GSVLNH------VLLHQTIIGLEMKKQ-LEIIGIKPDIIVACHGGGSNFGGSALPFIPDVLSGKNIKIVAVEP--------ESCPSLTKGEYRYDFGDTAGLTPLMKMYTLGKDFVPPAIHAGGLRYHGASPIVSKLYHERLIDAASVTQEEVFEAGKLFAKLEGIVPAPESAHAIAYVIKEAKK-GDKESIVFTLSGHGYFDLNAYIN 416          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB2_PYRFU (Tryptophan synthase beta chain 2 OS=Pyrococcus furiosus GN=trpB2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.625e-12
Identity = 74/235 (31.49%), Postives = 108/235 (45.96%), Query Frame = -1
Query:  135 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-----DEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGV------GLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHAL-AFLEKLCPTLPNGAKVVV--NCSGGGDKDVDTVVNY 797
            A SEAI + + + EK+ Y  G+V+        V   Q++IG E  KQ ME++  +PDV++ CVG GSN  GL + F+      D +   I VE         K A ++ +G      G    L    +   LG H   V      GL Y GV P +S L + G  +       E  +A     +LEGI PA E++HA+ A ++K       G ++V+  N SG G  D+     Y
Sbjct:  207 AISEAIEDVLKD-EKARYSLGSVLNH------VLMHQTVIGLEA-KQQMEEFE-EPDVIIGCVGGGSNFAGLAYPFVKEVLDGDNEYEFIAVEP--------KAAPSMTRGVYTYDFGDSGELTPKLKMHTLG-HRYHVPPIHAGGLRYHGVAPTLSVLVNNGIVKPIAYHQTEVFEAAALFAKLEGIVPAPESAHAIKATIDKAIEAKREGKEIVILFNLSGHGLLDLHGYEEY 423          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PYRHO (Tryptophan synthase beta chain OS=Pyrococcus horikoshii GN=trpB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.428e-12
Identity = 72/230 (31.30%), Postives = 106/230 (46.09%), Query Frame = -1
Query:  135 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGV------GLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHAL-AFLEKLCPTLPNGAKVVV--NCSGGGDKDVDTVVNY 797
            A SEAI + + + EK+ Y  G+V+        V   Q++IG E +KQ  E    +PDV++ CVG GSN  GL + FI D    L G     F     +   T+ KG     +G  + L    +   LG H+  V      GL Y G+ P +S L + G  +       E  +A     + EGI PA E++HA+ A ++K       G + V+  N SG G  D+    +Y
Sbjct:  218 AISEAIEDVLSD-EKARYSLGSVLNH------VLMHQTVIGLEAKKQVKEF--EEPDVIIGCVGGGSNFAGLSYPFIKDV---LDGKAEYEFIAVEPRAVPTMTKGVYTYDYGDSAGLTPKIKMYTLG-HTYYVPPIHAGGLRYHGLAPTLSVLMNHGIVKPMAYHQTEVFEAAVLFAKAEGIVPAPESAHAVRAVIDKALEAKRKGEETVILFNLSGHGLLDLKGYEDY 434          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB2_PYRAB (Tryptophan synthase beta chain 2 OS=Pyrococcus abyssi GN=trpB2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.974e-12
Identity = 72/230 (31.30%), Postives = 110/230 (47.83%), Query Frame = -1
Query:  135 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGV------GLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHAL-AFLEKLCPTLPNGAKVVV--NCSGGGDKDVDTVVNY 797
            A SEAI + + + EK+ Y  G+V+        V   Q++IG E ++Q ME++  +PDV++ CVG GSN  GL + F+ D    L G     F     K A T+ +G     +G  + L    +   LG H   V      GL Y G+ P +S L + G  +       E  +A     + EGI PA E++HA+ A ++K       G ++V+  N SG G  D+    +Y
Sbjct:  218 AISEAIEDVLKD-EKARYSLGSVLNH------VLMHQTVIGLEAKEQ-MEEFE-EPDVIIGCVGGGSNFAGLAYPFVKDV---LDGKSEYEFIAVEPKAAPTMTRGVYTYDYGDSAGLTPKLKMHTLG-HRYYVPPIHAGGLRYHGLAPTLSVLINHGIVKPIAYHQTEVFEAAVLFAKAEGIVPAPESAHAVKAVIDKALEARREGKEMVILFNLSGHGLLDLKGYEDY 434          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB2_AERPE (Tryptophan synthase beta chain 2 OS=Aeropyrum pernix GN=trpB2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.701e-11
Identity = 69/230 (30.00%), Postives = 103/230 (44.78%), Query Frame = -1
Query:  135 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGV------GLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHAL-AFLEKLCPTLPNGAKVVV--NCSGGGDKDVDTVVNY 797
            A SEAI + + +   + Y  G+V+        V   Q++IG E  KQ  E  G  PD+++  VG GSN  G  + FI     RL G  +  F     K + ++ +G     +G  + L    +   LG H+  V      GL Y GV P +S L   G  E      +E  +A     + EGI PA E++HA+ A +++       G +VV+  N SG G  D+     Y
Sbjct:  213 AISEAIEDVINSGGNAKYSLGSVLNH------VLLHQTVIGLEAEKQFREA-GVYPDIMIGAVGGGSNFAGFTYPFIRH---RLKGSSSTRFIAVEPKASPSMTRGVYTYDYGDTAGLTPLLKMHTLG-HTYQVPPIHAGGLRYHGVAPTLSVLLKHGIVEARAYHQREVFRAAHMFAKAEGIVPAPESAHAVKAAIDEAIKARDEGRRVVIAFNLSGHGLLDLQGYREY 431          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB2_METAC (Tryptophan synthase beta chain 2 OS=Methanosarcina acetivorans GN=trpB2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.790e-11
Identity = 73/229 (31.88%), Postives = 100/229 (43.67%), Query Frame = -1
Query:  135 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSV-----GVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHAL--AFLEKLCPTLPNGAKVVV-NCSGGGDKDVDTVVNY 797
            A SEA+ + + + E + Y  G+V+        V   Q++IG E  KQ + +    PDV++ C G GSN  G+  EFI D   RL G  +A           +L KGE     G  + +    +   LG   V       GL Y G  P IS L   G  E  +   QE   A  +  R EGI PA E+SHA+  A  E L        K ++ N SG G  D+ +   Y
Sbjct:  219 AISEAVEDAIAH-ENTKYSLGSVLNH------VVLHQTVIGAEC-KQQLAQVEEYPDVVIGCCGGGSNLGGIGLEFIKD---RLEGKHSARVVAVEPSACPSLTKGEYRYDFGDTAEMTPLLKMYTLGHKHVPPAIHAGGLRYHGDSPIISKLCSEGLMEAVSYDQQEVFDAAVQFARTEGIVPAPESSHAIRCAIDEALAAKQTGEEKTILFNLSGHGHFDMSSYDKY 436          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_THEON (Tryptophan synthase beta chain OS=Thermococcus onnurineus (strain NA1) GN=trpB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.465e-11
Identity = 68/224 (30.36%), Postives = 104/224 (46.43%), Query Frame = -1
Query:  153 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGV------GLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHAL-AFLEKLCPTLPNGAKVVV--NCSGGGDKDV 797
            A SEAI + + + EK+ Y  G+V+        V   Q++IG E ++Q  E     PDV++ CVG GSN  GL + F+ D   RL G     F     + A ++ +G     +G    L    +   LG H+  V      GL Y G+ P +S L + G          E  +A +   + EGI PA E++HA+ A +++       G + V+  N SG G  D+
Sbjct:  207 AISEAIEDVLRD-EKARYALGSVLNH------VLMHQTVIGLEAKEQMKEF--EDPDVIIGCVGGGSNFAGLAYPFVKD---RLDGKADYEFIAVEPRAAPSMTRGVYTYDYGDSGGLTPKMKMHTLG-HTYYVPPIHAGGLRYHGLAPTLSILINHGIVRPVAYHQTEVFEAARLFAKTEGIVPAPESAHAVKAAIDRALKAKEEGKEEVILFNLSGHGLLDL 417          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_THEGJ (Tryptophan synthase beta chain OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=trpB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.444e-11
Identity = 68/230 (29.57%), Postives = 104/230 (45.22%), Query Frame = -1
Query:  135 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIND-----EDVRLIGVEA-AGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHAL-AFLEKLCPTLPNGAKVVV--NCSGGGDKDVDTVVNY 797
            A SEAI + + + EK+ Y  G+V+        V   Q++IG E ++Q  E    +PDV++ CVG GSN  GL + F+ D      D   I VE  A   +  G +      G+ G Y   M          +   H+ G  L Y G+ P +S L + G  +       E  QA +   + EGI PA E++HA+   +++       G + V+  N SG G  D+    +Y
Sbjct:  207 AISEAIEDVLKD-EKARYALGSVLNH------VLMHQTVIGLEAQEQMKEF--EEPDVIIGCVGGGSNFAGLAYPFVRDVLSGKADYEFIAVEPKAAPSMTRGVYKYDF--GDSGGYTPKMKMHTLGHTYYVPPIHAGG--LRYHGLAPTLSILINHGIVKPVAYHQTEVFQAAELFAKTEGIIPAPESAHAIKGVIDRALKAKEEGREEVILFNLSGHGLLDLKGYEDY 423          
The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
TRPB_PYRIL5.651e-1530.26Tryptophan synthase beta chain OS=Pyrobaculum isla... [more]
TRPB2_ARCFU2.010e-1232.76Tryptophan synthase beta chain 2 OS=Archaeoglobus ... [more]
TRPB_FERNB2.625e-1229.69Tryptophan synthase beta chain OS=Fervidobacterium... [more]
TRPB2_PYRFU2.625e-1231.49Tryptophan synthase beta chain 2 OS=Pyrococcus fur... [more]
TRPB_PYRHO3.428e-1231.30Tryptophan synthase beta chain OS=Pyrococcus horik... [more]
TRPB2_PYRAB9.974e-1231.30Tryptophan synthase beta chain 2 OS=Pyrococcus aby... [more]
TRPB2_AERPE1.701e-1130.00Tryptophan synthase beta chain 2 OS=Aeropyrum pern... [more]
TRPB2_METAC3.790e-1131.88Tryptophan synthase beta chain 2 OS=Methanosarcina... [more]
TRPB_THEON6.465e-1130.36Tryptophan synthase beta chain OS=Thermococcus onn... [more]
TRPB_THEGJ8.444e-1129.57Tryptophan synthase beta chain OS=Thermococcus gam... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTGAGAAAAATAGGTCTTAAATTAATAGATTTCTCGGGTTGCTGCT
AAATTGACGGGAACCCTTAAATATTGTGGTCACCACTTCTTCGATCCATT
ACAATTTCTACGTCGATAATTATTGATTGTATCTGTAATTGACGACCGTG
TCGACGTCCTTATCCCCACCTCCACTACAGTTGACAACAACTTTTGCACC
ATTAGGTAAAGTAGGGCAAAGTTTCTCTAGAAATGCTAATGCATGAGATG
CCTCAAGGGCCGGAAATATGCCTTCTAATCTGCACAGCCGTTGATATGCT
TGGACAGCTTCTTGGTCAGTCGCAGTGTAGAACTCCGCACGCCCAGTGTC
CCTAAGAAAGCTTATCTCCGGGCCAACTCCTGGATACTCTAGCCCTACAC
CGACAGAATGAGTCCCCAAGATTTGGCCTTCTTCATCTTGCAACAAGTAG
CTCATGGCTCCATGATAAACACCCACTTCCCCTTTAGCCAGAGTTGCAGC
GTGTTTGCCGCTGTCCAAGCCAAATCCAGCAGCCTCCACTCCAATCAATC
TCACATCTTCATCATTTATGAATTCATGAAACAAACCCAACGCATTTGAT
CCACTGCCCACACAAGCCAGCAATACATCAGGCTTGCCTCCCCATTTTTC
CATTGCTTGTTTTCTCGTTTCTTTGCCTATGATTGATTGAAATTCTCGTA
CCATTATTGGACACGGGTGAGGCCCCACCACCGTACCCGTTAAATAATAG
CTTTTTTCTAAGTTCCCCACCCAATTTCTGATAGCTTCTGAGCTTGCTTC
TTTGAAACATCCATCCACTGC
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