CX043276
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PYRIL (Tryptophan synthase beta chain OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=trpB PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.651e-15 Identity = 69/228 (30.26%), Postives = 102/228 (44.74%), Query Frame = -1 Query: 150 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEG--QILGTHSVG----------VGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVD 797 A SEA+ +V + E+ YL G+V+ V Q++IG E +Q E+ PD +ACVG GSN G + ++G + G G K A + + G Y D G ++ +++G GL Y G P +S L+ G E +E ++A R EG+ PA E++HA+ + L LP G+ VV N SG G DVD Sbjct: 195 AISEAVE-YVLSGERRKYLPGSVME------FVLLHQTVIGLEAMRQLPEE----PDYAVACVGGGSNFGGFTYP--------MLGAKLRGEGFGKTKFLAVESAAAPKLTRGEYRYDFPDATGILPLIKMYTLGHDYVPPPVHAAGLRYHGAAPSLSLLKRLGHVEAVAYGQEEVMEAALLFARSEGVLPAPESAHAVRAVIYLAKKLPPGSVVVFNMSGHGLLDVD 403
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB2_ARCFU (Tryptophan synthase beta chain 2 OS=Archaeoglobus fulgidus GN=trpB2 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.010e-12 Identity = 76/232 (32.76%), Postives = 102/232 (43.97%), Query Frame = -1 Query: 135 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDE---DVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSV-----GVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHAL--AFLEKLCPTLPNGAKVVV-NCSGGGDKDVDTVVNY 797 A SEAI + N E + Y G+V+ V Q++IG ET+ Q +EK KPDVL+ CVG GSN GL + F+ND D+ +I VE A TL GE G ++ L + LG + GL Y G P + L G + +A R EGI PA E +HA+ A E + N KV+V SG G D+ +Y Sbjct: 212 AISEAIEDAAKN-ENTKYSLGSVLNH------VLLHQTVIGLETKAQ-LEKVDEKPDVLIGCVGGGSNFAGLTYPFVNDAKNGDLEIIAVEPAA--------CPTLTAGEYKYDFGDVAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGDAPTLCMLVKHGVIKARAVKQLPTFEAGLLFARTEGIIPAPETNHAVRAAIDEAIKARENNEEKVIVFGFSGHGLLDLQAYDDY 427
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_FERNB (Tryptophan synthase beta chain OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=trpB PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.625e-12 Identity = 68/229 (29.69%), Postives = 108/229 (47.16%), Query Frame = -1 Query: 138 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSN----ALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSV-----GVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 797 A SEAI + + Y L G+V+ V Q+IIG E +KQ +E G KPD+++AC G GSN AL + ++ ++++++ VE + +L KGE G + L + LG V GL Y G P +S L + + T +E +A + +LEGI PA E++HA+A++ K + +V SG G D++ +N Sbjct: 205 AISEAIHTVLNEKDAKYSL-GSVLNH------VLLHQTIIGLEMKKQ-LEIIGIKPDIIVACHGGGSNFGGSALPFIPDVLSGKNIKIVAVEP--------ESCPSLTKGEYRYDFGDTAGLTPLMKMYTLGKDFVPPAIHAGGLRYHGASPIVSKLYHERLIDAASVTQEEVFEAGKLFAKLEGIVPAPESAHAIAYVIKEAKK-GDKESIVFTLSGHGYFDLNAYIN 416
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB2_PYRFU (Tryptophan synthase beta chain 2 OS=Pyrococcus furiosus GN=trpB2 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.625e-12 Identity = 74/235 (31.49%), Postives = 108/235 (45.96%), Query Frame = -1 Query: 135 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN-----DEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGV------GLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHAL-AFLEKLCPTLPNGAKVVV--NCSGGGDKDVDTVVNY 797 A SEAI + + + EK+ Y G+V+ V Q++IG E KQ ME++ +PDV++ CVG GSN GL + F+ D + I VE K A ++ +G G L + LG H V GL Y GV P +S L + G + E +A +LEGI PA E++HA+ A ++K G ++V+ N SG G D+ Y Sbjct: 207 AISEAIEDVLKD-EKARYSLGSVLNH------VLMHQTVIGLEA-KQQMEEFE-EPDVIIGCVGGGSNFAGLAYPFVKEVLDGDNEYEFIAVEP--------KAAPSMTRGVYTYDFGDSGELTPKLKMHTLG-HRYHVPPIHAGGLRYHGVAPTLSVLVNNGIVKPIAYHQTEVFEAAALFAKLEGIVPAPESAHAIKATIDKAIEAKREGKEIVILFNLSGHGLLDLHGYEEY 423
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PYRHO (Tryptophan synthase beta chain OS=Pyrococcus horikoshii GN=trpB PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.428e-12 Identity = 72/230 (31.30%), Postives = 106/230 (46.09%), Query Frame = -1 Query: 135 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGV------GLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHAL-AFLEKLCPTLPNGAKVVV--NCSGGGDKDVDTVVNY 797 A SEAI + + + EK+ Y G+V+ V Q++IG E +KQ E +PDV++ CVG GSN GL + FI D L G F + T+ KG +G + L + LG H+ V GL Y G+ P +S L + G + E +A + EGI PA E++HA+ A ++K G + V+ N SG G D+ +Y Sbjct: 218 AISEAIEDVLSD-EKARYSLGSVLNH------VLMHQTVIGLEAKKQVKEF--EEPDVIIGCVGGGSNFAGLSYPFIKDV---LDGKAEYEFIAVEPRAVPTMTKGVYTYDYGDSAGLTPKIKMYTLG-HTYYVPPIHAGGLRYHGLAPTLSVLMNHGIVKPMAYHQTEVFEAAVLFAKAEGIVPAPESAHAVRAVIDKALEAKRKGEETVILFNLSGHGLLDLKGYEDY 434
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB2_PYRAB (Tryptophan synthase beta chain 2 OS=Pyrococcus abyssi GN=trpB2 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.974e-12 Identity = 72/230 (31.30%), Postives = 110/230 (47.83%), Query Frame = -1 Query: 135 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGV------GLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHAL-AFLEKLCPTLPNGAKVVV--NCSGGGDKDVDTVVNY 797 A SEAI + + + EK+ Y G+V+ V Q++IG E ++Q ME++ +PDV++ CVG GSN GL + F+ D L G F K A T+ +G +G + L + LG H V GL Y G+ P +S L + G + E +A + EGI PA E++HA+ A ++K G ++V+ N SG G D+ +Y Sbjct: 218 AISEAIEDVLKD-EKARYSLGSVLNH------VLMHQTVIGLEAKEQ-MEEFE-EPDVIIGCVGGGSNFAGLAYPFVKDV---LDGKSEYEFIAVEPKAAPTMTRGVYTYDYGDSAGLTPKLKMHTLG-HRYYVPPIHAGGLRYHGLAPTLSVLINHGIVKPIAYHQTEVFEAAVLFAKAEGIVPAPESAHAVKAVIDKALEARREGKEMVILFNLSGHGLLDLKGYEDY 434
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB2_AERPE (Tryptophan synthase beta chain 2 OS=Aeropyrum pernix GN=trpB2 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.701e-11 Identity = 69/230 (30.00%), Postives = 103/230 (44.78%), Query Frame = -1 Query: 135 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGV------GLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHAL-AFLEKLCPTLPNGAKVVV--NCSGGGDKDVDTVVNY 797 A SEAI + + + + Y G+V+ V Q++IG E KQ E G PD+++ VG GSN G + FI RL G + F K + ++ +G +G + L + LG H+ V GL Y GV P +S L G E +E +A + EGI PA E++HA+ A +++ G +VV+ N SG G D+ Y Sbjct: 213 AISEAIEDVINSGGNAKYSLGSVLNH------VLLHQTVIGLEAEKQFREA-GVYPDIMIGAVGGGSNFAGFTYPFIRH---RLKGSSSTRFIAVEPKASPSMTRGVYTYDYGDTAGLTPLLKMHTLG-HTYQVPPIHAGGLRYHGVAPTLSVLLKHGIVEARAYHQREVFRAAHMFAKAEGIVPAPESAHAVKAAIDEAIKARDEGRRVVIAFNLSGHGLLDLQGYREY 431
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB2_METAC (Tryptophan synthase beta chain 2 OS=Methanosarcina acetivorans GN=trpB2 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.790e-11 Identity = 73/229 (31.88%), Postives = 100/229 (43.67%), Query Frame = -1 Query: 135 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSV-----GVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHAL--AFLEKLCPTLPNGAKVVV-NCSGGGDKDVDTVVNY 797 A SEA+ + + + E + Y G+V+ V Q++IG E KQ + + PDV++ C G GSN G+ EFI D RL G +A +L KGE G + + + LG V GL Y G P IS L G E + QE A + R EGI PA E+SHA+ A E L K ++ N SG G D+ + Y Sbjct: 219 AISEAVEDAIAH-ENTKYSLGSVLNH------VVLHQTVIGAEC-KQQLAQVEEYPDVVIGCCGGGSNLGGIGLEFIKD---RLEGKHSARVVAVEPSACPSLTKGEYRYDFGDTAEMTPLLKMYTLGHKHVPPAIHAGGLRYHGDSPIISKLCSEGLMEAVSYDQQEVFDAAVQFARTEGIVPAPESSHAIRCAIDEALAAKQTGEEKTILFNLSGHGHFDMSSYDKY 436
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_THEON (Tryptophan synthase beta chain OS=Thermococcus onnurineus (strain NA1) GN=trpB PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.465e-11 Identity = 68/224 (30.36%), Postives = 104/224 (46.43%), Query Frame = -1 Query: 153 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGV------GLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHAL-AFLEKLCPTLPNGAKVVV--NCSGGGDKDV 797 A SEAI + + + EK+ Y G+V+ V Q++IG E ++Q E PDV++ CVG GSN GL + F+ D RL G F + A ++ +G +G L + LG H+ V GL Y G+ P +S L + G E +A + + EGI PA E++HA+ A +++ G + V+ N SG G D+ Sbjct: 207 AISEAIEDVLRD-EKARYALGSVLNH------VLMHQTVIGLEAKEQMKEF--EDPDVIIGCVGGGSNFAGLAYPFVKD---RLDGKADYEFIAVEPRAAPSMTRGVYTYDYGDSGGLTPKMKMHTLG-HTYYVPPIHAGGLRYHGLAPTLSILINHGIVRPVAYHQTEVFEAARLFAKTEGIVPAPESAHAVKAAIDRALKAKEEGKEEVILFNLSGHGLLDL 417
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_THEGJ (Tryptophan synthase beta chain OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=trpB PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.444e-11 Identity = 68/230 (29.57%), Postives = 104/230 (45.22%), Query Frame = -1 Query: 135 ASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIND-----EDVRLIGVEA-AGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHAL-AFLEKLCPTLPNGAKVVV--NCSGGGDKDVDTVVNY 797 A SEAI + + + EK+ Y G+V+ V Q++IG E ++Q E +PDV++ CVG GSN GL + F+ D D I VE A + G + G+ G Y M + H+ G L Y G+ P +S L + G + E QA + + EGI PA E++HA+ +++ G + V+ N SG G D+ +Y Sbjct: 207 AISEAIEDVLKD-EKARYALGSVLNH------VLMHQTVIGLEAQEQMKEF--EEPDVIIGCVGGGSNFAGLAYPFVRDVLSGKADYEFIAVEPKAAPSMTRGVYKYDF--GDSGGYTPKMKMHTLGHTYYVPPIHAGG--LRYHGLAPTLSILINHGIVKPVAYHQTEVFQAAELFAKTEGIIPAPESAHAIKGVIDRALKAKEEGREEVILFNLSGHGLLDLKGYEDY 423 The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 441
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bpback to top |