CX043276

Overview
NameCX043276
Unique NameCX043276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2462 contig Csv1_Contig2462:113..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_THEAB (Tryptophan synthase beta chain OS=Thermosipho africanus (strain TCF52B) GN=trpB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.444e-11
Identity = 63/195 (32.31%), Postives = 89/195 (45.64%), Query Frame = -1 
Query:  141 QSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDE----DVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSV-----GVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHAL--AFLEKLCPTLPNGAKVVV-NCSGGGDKDVDTVV 689
            Q+IIG E +KQ +EK   +PDV++ C G GSN  G    FI D+    ++R I  E         +   TL KGE     G  +      +   LG   +       GL Y G  P IS L +    E    + +E  +A +   +LEGI PA E+SHA+  A  E L     N  K++V   SG G  D++  +
Sbjct:  235 QTIIGLEIKKQ-LEKLNIQPDVIIGCHGGGSNFGGTILPFIPDKLSGKNIRFIACEP--------ESCPTLTKGEYRYDFGDTAGFTPLLKMYTLGKDFIPPSIHAGGLRYHGAAPIISALLNHNLIEAKAFSQEETFKAARLFSKLEGIIPAPESSHAIAGAIKEALNAKKENKEKIIVFTLSGHGLFDLNAYI 420
The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
TRPB_THEAB8.444e-1132.31Tryptophan synthase beta chain OS=Thermosipho afri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTGAGAAAAATAGGTCTTAAATTAATAGATTTCTCGGGTTGCTGCT
AAATTGACGGGAACCCTTAAATATTGTGGTCACCACTTCTTCGATCCATT
ACAATTTCTACGTCGATAATTATTGATTGTATCTGTAATTGACGACCGTG
TCGACGTCCTTATCCCCACCTCCACTACAGTTGACAACAACTTTTGCACC
ATTAGGTAAAGTAGGGCAAAGTTTCTCTAGAAATGCTAATGCATGAGATG
CCTCAAGGGCCGGAAATATGCCTTCTAATCTGCACAGCCGTTGATATGCT
TGGACAGCTTCTTGGTCAGTCGCAGTGTAGAACTCCGCACGCCCAGTGTC
CCTAAGAAAGCTTATCTCCGGGCCAACTCCTGGATACTCTAGCCCTACAC
CGACAGAATGAGTCCCCAAGATTTGGCCTTCTTCATCTTGCAACAAGTAG
CTCATGGCTCCATGATAAACACCCACTTCCCCTTTAGCCAGAGTTGCAGC
GTGTTTGCCGCTGTCCAAGCCAAATCCAGCAGCCTCCACTCCAATCAATC
TCACATCTTCATCATTTATGAATTCATGAAACAAACCCAACGCATTTGAT
CCACTGCCCACACAAGCCAGCAATACATCAGGCTTGCCTCCCCATTTTTC
CATTGCTTGTTTTCTCGTTTCTTTGCCTATGATTGATTGAAATTCTCGTA
CCATTATTGGACACGGGTGAGGCCCCACCACCGTACCCGTTAAATAATAG
CTTTTTTCTAAGTTCCCCACCCAATTTCTGATAGCTTCTGAGCTTGCTTC
TTTGAAACATCCATCCACTGC
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