CX043276

Overview
NameCX043276
Unique NameCX043276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2462 contig Csv1_Contig2462:113..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_LEPCP (Tryptophan synthase beta chain OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=trpB PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.674e-67
Identity = 124/222 (55.86%), Postives = 162/222 (72.97%), Query Frame = -1
Query:  138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803
            K+A +EA+R+WV N+E ++Y+ GTV GPHP P MVR+FQ +IG E   Q     G +PD ++ACVG GSNA+G+F+ +I  E VRLIGVEAAG G++SGKH+A+L +G  GV HG  +Y+LQD  GQI  THSV  GL+YPGVGPE ++L+D GRAE+   TD EA+QA+  LCR EGI PALE+SHA+A+  KL  T+     V+VN SG GDKD+ TV +
Sbjct:  172 KDALNEAMRDWVTNVENTFYIIGTVAGPHPYPAMVRDFQRVIGDECLVQMPALAGRQPDAVVACVGGGSNAMGIFYPYIPHEGVRLIGVEAAGEGMESGKHSASLQRGSPGVLHGNRTYVLQDANGQITETHSVSAGLDYPGVGPEHAYLKDIGRAEYVGITDAEALQAFHYLCRAEGIIPALESSHAVAYAMKLAKTMRPDQHVLVNLSGRGDKDIGTVAD 393          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_LISMH (Tryptophan synthase beta chain OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=trpB PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.186e-67
Identity = 121/218 (55.50%), Postives = 165/218 (75.69%), Query Frame = -1
Query:  150 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVD 803
            K+A +EA+R WV N+E ++Y+ G+V+GPHP P +VR++QS+IG E RKQ +EK G  PD ++ACVG GSNA+GLF+ F++D  V++ GVEAAG GL++  HAAT++KGE+G+ HGAM  +LQDE GQIL   S+  GL+YPG+GPE SF RD GRA +++ TD EAV+A+Q LCR EGI PALE+SHA+++  KL   +     +VV  SG GDKDV+
Sbjct:  171 KDAVNEALRFWVANVEDTHYIMGSVLGPHPFPEIVRDYQSVIGIEARKQHLEKEGKLPDAIVACVGGGSNAMGLFYPFVDDVSVQMHGVEAAGHGLETEFHAATISKGEIGILHGAMMDVLQDENGQILEAFSISAGLDYPGIGPEHSFFRDLGRAAYHSVTDDEAVEAFQLLCRTEGIIPALESSHAISYAVKLASQMRPEESMVVCLSGRGDKDVN 388          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_LISMF (Tryptophan synthase beta chain OS=Listeria monocytogenes serotype 4b (strain F2365) GN=trpB PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.186e-67
Identity = 121/218 (55.50%), Postives = 165/218 (75.69%), Query Frame = -1
Query:  150 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVD 803
            K+A +EA+R WV N+E ++Y+ G+V+GPHP P +VR++QS+IG E RKQ +EK G  PD ++ACVG GSNA+GLF+ F++D  V++ GVEAAG GL++  HAAT++KGE+G+ HGAM  +LQDE GQIL   S+  GL+YPG+GPE SF RD GRA +++ TD EAV+A+Q LCR EGI PALE+SHA+++  KL   +     +VV  SG GDKDV+
Sbjct:  171 KDAVNEALRFWVANVEDTHYIMGSVLGPHPFPEIVRDYQSVIGIEARKQHLEKEGKLPDAIVACVGGGSNAMGLFYPFVDDVSVQMHGVEAAGHGLETEFHAATISKGEIGILHGAMMDVLQDENGQILEAFSISAGLDYPGIGPEHSFFRDLGRAAYHSVTDDEAVEAFQLLCRTEGIIPALESSHAISYAVKLASQMRPEESMVVCLSGRGDKDVN 388          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_LISMC (Tryptophan synthase beta chain OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=trpB PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.186e-67
Identity = 121/218 (55.50%), Postives = 165/218 (75.69%), Query Frame = -1
Query:  150 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVD 803
            K+A +EA+R WV N+E ++Y+ G+V+GPHP P +VR++QS+IG E RKQ +EK G  PD ++ACVG GSNA+GLF+ F++D  V++ GVEAAG GL++  HAAT++KGE+G+ HGAM  +LQDE GQIL   S+  GL+YPG+GPE SF RD GRA +++ TD EAV+A+Q LCR EGI PALE+SHA+++  KL   +     +VV  SG GDKDV+
Sbjct:  171 KDAVNEALRFWVANVEDTHYIMGSVLGPHPFPEIVRDYQSVIGIEARKQHLEKEGKLPDAIVACVGGGSNAMGLFYPFVDDVSVQMHGVEAAGHGLETEFHAATISKGEIGILHGAMMDVLQDENGQILEAFSISAGLDYPGIGPEHSFFRDLGRAAYHSVTDDEAVEAFQLLCRTEGIIPALESSHAISYAVKLASQMRPEESMVVCLSGRGDKDVN 388          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_CLOAB (Tryptophan synthase beta chain OS=Clostridium acetobutylicum GN=trpB PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.186e-67
Identity = 119/221 (53.85%), Postives = 167/221 (75.57%), Query Frame = -1
Query:  141 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVV 803
            K+A + A+R+WV N++ +YY+ G+V+GPHP P +V++FQ IIG+E RKQ ++  G  PD ++ACVG GSN++G+F+ FI DE V+LIGVEAAG G+D+  HAATL KG VG+ HG M+Y+LQDE+GQI   +SV  GL+YPGVGP+ S+L++  RA +   TD+EA++A+  L   EGI PALE+SHA+A+  KL P+L     V++N SG GDKDV+TV+
Sbjct:  164 KDAINAAMRDWVTNIDNTYYVIGSVMGPHPYPTIVKDFQKIIGEEARKQILKAEGRLPDYVVACVGGGSNSMGIFYPFIKDEGVKLIGVEAAGLGIDTPMHAATLTKGSVGIIHGMMTYVLQDEDGQITPAYSVSAGLDYPGVGPQHSYLKEKERASYEAVTDKEALKAFLYLSEKEGIIPALESSHAVAYAMKLAPSLSKDEIVIINLSGRGDKDVNTVM 384          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_BORPD (Tryptophan synthase beta chain OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=trpB PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.186e-67
Identity = 121/220 (55.00%), Postives = 167/220 (75.91%), Query Frame = -1
Query:  144 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 803
            K+A +EA+R+WV N+E ++Y+ GTV GP P P MVR+FQ++IG E  +Q  +  G +PD ++A VG GSNA+G+F+ +I  E+VRLIGVEAAG GLDSG+HAA+LA G+VGV HG  +Y++Q+ +GQ+  THSV  GL+YPGVGPE ++L+D+GRA++   TD EA+ A+   CR+EGI PALE+SHA+A   K+ PTLP    ++VN SG GDKD+ TV
Sbjct:  172 KDALNEAMRDWVTNIENTFYIIGTVAGPDPYPRMVRDFQTVIGNECLEQMPQDAGRQPDYVVASVGGGSNAMGIFYPYIPHENVRLIGVEAAGEGLDSGRHAASLAAGQVGVLHGNRTYVMQNADGQVQETHSVSAGLDYPGVGPEHAWLKDSGRAQYVGITDDEALAAFHDCCRIEGIMPALESSHAIAQAVKMAPTLPKDTIILVNLSGRGDKDMHTV 391          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_HELPY (Tryptophan synthase beta chain OS=Helicobacter pylori GN=trpB PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.855e-67
Identity = 119/222 (53.60%), Postives = 164/222 (73.87%), Query Frame = -1
Query:  138 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 803
            K+A +EA+R+W  + + ++YL GT  GPHP P MV+ FQ +IG E + Q +EK    PD ++ACVG GSNA+G+F  F+ND++V+LIGVE AG GL++ KH ATL KG VG+ HG  +YLLQD+EGQI  +HS+  GL+YPGVGPE S+L+++GRA + +A+D EA++A++ LC+ EGI PALE+SHALA+  KL       + +VVN SG GDKD+ TV N
Sbjct:  165 KDAVNEALRDWASSYKDTHYLLGTAAGPHPYPTMVKTFQKMIGDEVKSQILEKENRLPDYVIACVGGGSNAIGIFSAFLNDKEVKLIGVEPAGLGLETNKHGATLNKGRVGILHGNKTYLLQDDEGQIAESHSISAGLDYPGVGPEHSYLKESGRAVYESASDAEALEAFKLLCQKEGIIPALESSHALAYALKLAQKCEEESIIVVNLSGRGDKDLSTVYN 386          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_BACCR (Tryptophan synthase beta chain OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=trpB PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.855e-67
Identity = 120/229 (52.40%), Postives = 168/229 (73.36%), Query Frame = -1
Query:  135 AVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 821
            A  G  K+A +EA+R WV ++  ++Y+ G+V+GPHP P +VR+FQS+IG ET+KQ     G  P+ ++AC+G GSNA+G+F+ F++DE+V L GVEAAG G+ + KHAATL KG VGV HG+M YLLQ+EEGQI   HS+  GL+YPGVGPE S L+D GR  +++ TD+EA++A+Q L + EGI PALE+SHA+A+  KL P +     +V+  SG GDKDV+++  Y
Sbjct:  165 AGSGTLKDAVNEALRYWVSHVHDTHYIMGSVLGPHPFPQIVRDFQSVIGNETKKQYEALEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEKHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDEEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKKDEGLVICLSGRGDKDVESIKRY 393          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_BACC4 (Tryptophan synthase beta chain OS=Bacillus cereus (strain B4264) GN=trpB PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.855e-67
Identity = 120/229 (52.40%), Postives = 168/229 (73.36%), Query Frame = -1
Query:  135 AVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 821
            A  G  K+A +EA+R WV ++  ++Y+ G+V+GPHP P +VR+FQS+IG ET+KQ     G  P+ ++AC+G GSNA+G+F+ F++DE+V L GVEAAG G+ + KHAATL KG VGV HG+M YLLQ+EEGQI   HS+  GL+YPGVGPE S L+D GR  +++ TD+EA++A+Q L + EGI PALE+SHA+A+  KL P +     +V+  SG GDKDV+++  Y
Sbjct:  165 AGSGTLKDAVNEALRYWVSHVHDTHYIMGSVLGPHPFPQIVRDFQSVIGNETKKQYEALEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEKHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDEEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKKDEGLVICLSGRGDKDVESIKRY 393          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_PSE14 (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=trpB PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.729e-67
Identity = 123/226 (54.42%), Postives = 161/226 (71.24%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G  K+A +EA+R+WV N++ ++YL GTV GPHP P MVR+FQ+IIGKET++Q  EK G  PD L+ACVG GSNA+GLFH F++D  V +IGVEA G G+D+ KHAA+L  G  GV HG  +YLLQD +GQI   HS+  GL+YPG+GPE +FL +  R E+ + TD EA+ A+ + C LEGI PALE +HALA   K    L +   +VV  SG GDKD+ TV+N+
Sbjct:  172 GTLKDAMNEALRDWVTNVDDTFYLIGTVAGPHPYPAMVRDFQAIIGKETKEQMQEKEGRLPDSLIACVGGGSNAMGLFHPFLDDASVEIIGVEAGGHGVDTDKHAASLNGGVPGVLHGNRTYLLQDGDGQITDAHSISAGLDYPGIGPEHAFLHEVKRVEYVSITDDEALDAFHQCCLLEGIIPALETAHALAEAMKRATNLRDDHLMVVCLSGRGDKDMQTVMNH 397          
The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
TRPB_LEPCP1.674e-6755.86Tryptophan synthase beta chain OS=Leptothrix cholo... [more]
TRPB_LISMH2.186e-6755.50Tryptophan synthase beta chain OS=Listeria monocyt... [more]
TRPB_LISMF2.186e-6755.50Tryptophan synthase beta chain OS=Listeria monocyt... [more]
TRPB_LISMC2.186e-6755.50Tryptophan synthase beta chain OS=Listeria monocyt... [more]
TRPB_CLOAB2.186e-6753.85Tryptophan synthase beta chain OS=Clostridium acet... [more]
TRPB_BORPD2.186e-6755.00Tryptophan synthase beta chain OS=Bordetella petri... [more]
TRPB_HELPY2.855e-6753.60Tryptophan synthase beta chain OS=Helicobacter pyl... [more]
TRPB_BACCR2.855e-6752.40Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_BACC42.855e-6752.40Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_PSE143.729e-6754.42Tryptophan synthase beta chain OS=Pseudomonas syri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTGAGAAAAATAGGTCTTAAATTAATAGATTTCTCGGGTTGCTGCT
AAATTGACGGGAACCCTTAAATATTGTGGTCACCACTTCTTCGATCCATT
ACAATTTCTACGTCGATAATTATTGATTGTATCTGTAATTGACGACCGTG
TCGACGTCCTTATCCCCACCTCCACTACAGTTGACAACAACTTTTGCACC
ATTAGGTAAAGTAGGGCAAAGTTTCTCTAGAAATGCTAATGCATGAGATG
CCTCAAGGGCCGGAAATATGCCTTCTAATCTGCACAGCCGTTGATATGCT
TGGACAGCTTCTTGGTCAGTCGCAGTGTAGAACTCCGCACGCCCAGTGTC
CCTAAGAAAGCTTATCTCCGGGCCAACTCCTGGATACTCTAGCCCTACAC
CGACAGAATGAGTCCCCAAGATTTGGCCTTCTTCATCTTGCAACAAGTAG
CTCATGGCTCCATGATAAACACCCACTTCCCCTTTAGCCAGAGTTGCAGC
GTGTTTGCCGCTGTCCAAGCCAAATCCAGCAGCCTCCACTCCAATCAATC
TCACATCTTCATCATTTATGAATTCATGAAACAAACCCAACGCATTTGAT
CCACTGCCCACACAAGCCAGCAATACATCAGGCTTGCCTCCCCATTTTTC
CATTGCTTGTTTTCTCGTTTCTTTGCCTATGATTGATTGAAATTCTCGTA
CCATTATTGGACACGGGTGAGGCCCCACCACCGTACCCGTTAAATAATAG
CTTTTTTCTAAGTTCCCCACCCAATTTCTGATAGCTTCTGAGCTTGCTTC
TTTGAAACATCCATCCACTGC
back to top