CX043275

Overview
NameCX043275
Unique NameCX043275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:53..773. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043275 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.477e-50
Identity = 91/199 (45.73%), Postives = 126/199 (63.32%), Query Frame = 2
Query:  128 GHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGY 718
            G+      +  I+S +++  L  +++DA CPARGFYTY +F+ AA  FP F  +G    RKRE+AAF AQ  HETTGGW  AP G YAWG CY  +++P SS  D             Y+GRGPIQ++WN NY   G+ALG D L NP+++A    ++F++A+WFWMT +  KPSCH+V++ E++P   DV A R  G+
Sbjct:   41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGF 239          
BLAST of CX043275 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.929e-50
Identity = 93/187 (49.73%), Postives = 121/187 (64.71%), Query Frame = 2
Query:  167 SREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLP--GQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGY 718
            +  MFE +LP RN+  CP +GFYTYDA+  A + +PGFG +G++  RKRE+AAFFAQT  ET+G         + WGYC + +++P +SD          P    YYGRGP+QL WN NY  CG  LG +LL+ P+ +ATDPVLSF++A+WFWM       PSCHEVI  EW PS  D+ AGR PG+
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNP-NSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGF 253          
BLAST of CX043275 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.106e-49
Identity = 97/197 (49.24%), Postives = 130/197 (65.99%), Query Frame = 2
Query:  143 GGELG--KIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSD-XXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPSANDVNAGRLPGY 718
            GG  G   +++ + FE +LP+R+DA CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF AQT H T+       GG Y+WGYCY ++V  A+SD           PG+ Y+ RGP+Q+ +N NY   GEA+G DLL NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGY
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGY 280          
BLAST of CX043275 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.106e-49
Identity = 97/197 (49.24%), Postives = 130/197 (65.99%), Query Frame = 2
Query:  143 GGELG--KIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSD-XXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPSANDVNAGRLPGY 718
            GG  G   +++ + FE +LP+R+DA CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF AQT H T+       GG Y+WGYCY ++V  A+SD           PG+ Y+ RGP+Q+ +N NY   GEA+G DLL NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGY
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGY 280          
BLAST of CX043275 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.909e-47
Identity = 93/189 (49.21%), Postives = 120/189 (63.49%), Query Frame = 2
Query:  152 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGY 718
            +  +IS  +FE +L +R        GFYTYDAFI AA++FP F  +G+  +RKRE+AAF AQT HETTGGW  AP G Y  G         ++SD             Y+GRGPIQ+++N NY   G+A+GVDLL NPDL+ +D  + FK+A+WFWMT Q PKPS H+VI   W PS+ D  AGR+PGY
Sbjct:    1 VSSVISSSLFEKMLLHR--------GFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELG---------STSD-------------YFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGY 159          
BLAST of CX043275 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.873e-37
Identity = 82/224 (36.61%), Postives = 121/224 (54.02%), Query Frame = 2
Query:    5 PPCFQMRXXXXXXXXXXXXXXXXXGSAQNCGSGVVCGERD--TGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYG-RGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIID 667
            PPC Q R                    Q   S  V G R   +G+ T       +++  +F+ +  +R D  CP++GFY+Y +F+ AA++FP FG  G+   RKRE+AAF A     T+G  +D     +AWG C+I   +   +D           G+ Y  RGPIQLT N NY   G+A+G DL+ NPDL+  DP++SFK+A+WFWM+    KPSCH+++++
Sbjct:   79 PPCGQDRCCSVHGWCGGGNDYCSGSKCQYRCSSSVRGPRVALSGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVEN-PHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVLN 299          
BLAST of CX043275 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.624e-28
Identity = 68/179 (37.99%), Postives = 96/179 (53.63%), Query Frame = 2
Query:   92 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS---DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFW 619
            CG+G   G  D    T+   +  I++ E F  L+   +D  C A+GFYT DAF+ AA  +P FG +G+    KREIAAFFA   HET               +CYI ++   S    D             YYGRGP+Q++WN NY   G+++G D L +PD +A  PVL+F++A+W+W
Sbjct:   49 CGTGCQAGPCDVP-ATNDVSVASIVTPEFFAALVAQADDG-CAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETIK-------------FCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYW 212          
BLAST of CX043275 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.997e-27
Identity = 68/189 (35.98%), Postives = 102/189 (53.97%), Query Frame = 2
Query:   92 CGSGVVCGERDTGHGTD----GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXX--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPP 637
            CG+G   G   +  GT     GG +G I+++  F  ++       C  + FYT D+FI AA  FP F NS    + +REIA  FA   HET               +CYI +++ AS D            PG+ Y+GRGPIQL+WN NY  CG++L ++LL  P+L++++P ++F++ +WFWM +  P
Sbjct:   48 CGTGCRSGPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGGG-CAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHETGH-------------FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP 218          
BLAST of CX043275 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.113e-27
Identity = 67/178 (37.64%), Postives = 96/178 (53.93%), Query Frame = 2
Query:   92 CGSGVVCGER-DTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWM 622
            CG G   G   D   G     +  I+++E F D +  +  A CP + FYT   F+EA  A+PGFG    +  RKREIAA+FA   HET           +A  YC   Q  P + +            +Y+GRGP+QL+WN NY+  G+ L  D LN+PD++  DP++SFK+++WFW+
Sbjct:   25 CGPGCQAGPCWDPCEGDGTLTVSDIVTQE-FWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYPCNPNK-----------EYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI 190          
BLAST of CX043275 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.721e-27
Identity = 76/195 (38.97%), Postives = 97/195 (49.74%), Query Frame = 2
Query:   89 NCGSGVVCGERDT-----------GHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQ----VSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMT 625
            NC SG   G   T           G G  G  +  I+S+  F+ ++  +  A CP + FYT  AF+ A    P FGN G+    KREIAAFFA   HETT               C+I +    V  A  D           G+ YYGRGP+QL+WN NY   G+A+G D L NP+ +ATD   SFK+A+WFWMT
Sbjct:   55 NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTN-------------LCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT 233          
The following BLAST results are available for this feature:
BLAST of CX043275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI10_ORYSJ1.477e-5045.73Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI8_POPTR1.929e-5049.73Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI7_ORYSJ8.106e-4949.24Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI8.106e-4949.24Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIT_AVESA9.909e-4749.21Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
AGI_URTDI1.873e-3736.61Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI6_ORYSJ4.624e-2837.99Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_BRANA2.997e-2735.98Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIT_DIOJA5.113e-2737.64Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHIP_BETVU8.721e-2738.97Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A06-B12-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043275 ID=CX043275; Name=CX043275; organism=Citrus sinensis; type=EST; length=720bp
GCCCCCCCCTTGCTTTCAAATGAGGCTCATTGGGTCCTTACTAATTTTCT
CTCTAGTTTTATCTTTTGTACTAGGAGGTTCAGCACAGAATTGTGGAAGC
GGCGTTGTGTGCGGTGAACGTGATACTGGCCACGGGACGGATGGCGGTGA
ACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTCCGTATA
GAAATGATGCCCGATGCCCTGCCAGAGGCTTCTACACTTATGATGCTTTT
ATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGGAAATGAAAC
CATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAA
CTACTGGGGGATGGACCGATGCACCTGGTGGAGAATATGCTTGGGGATAT
TGCTATATTAGGCAAGTTAGCCCTGCGTCGTCCGACTACTGTTATCCTTA
CTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGAGGTCCAATTCAAC
TCACTTGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTTGGGGGTGGAC
TTGTTGAACAATCCAGACCTACTTGCCACTGATCCAGTACTATCATTCAA
GTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCC
ACGAAGTCATTATCGACGAATGGAAACCATCAGCAAATGACGTAAACGCC
GGCCGGCTTCCGGGATACGG
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