CX043275

Overview
NameCX043275
Unique NameCX043275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:53..773. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043275 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.383e-26
Identity = 64/188 (34.04%), Postives = 97/188 (51.60%), Query Frame = 2
Query:   92 CGSGVVCGERDTGHGTDGG-----ELGKIISREMFEDLLPYRNDAR--CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTA 628
            CG G   G   +G G  G       +  +++   F  +   +N A   C  + FYT  AF+ A + +PGF + G++   KREIAAFFA   HET               +CYI +++ +++  D            +YYGRGP+Q++WN NY   G A+G D L +P  +A D V++FK+A+WFWM +
Sbjct:   44 CGDGCQSGPCRSGRGGGGSGGGGANVASVVTSSFFNGI---KNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHETGH-------------FCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNS 215          
BLAST of CX043275 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.163e-25
Identity = 63/180 (35.00%), Postives = 94/180 (52.22%), Query Frame = 2
Query:   95 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDAR--CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWM 622
            G G   G    G G+ G  +  +++   F  +   +N A   C  + FYT  AF+ A  A+PGF + G E   KREIAAFFA   HET               +CYI +++ +++  D            +YYGRGP+Q++WN NY   G  +G + L +P+ +A D V++FK+A+WFWM
Sbjct:   61 GGGGGGGGGGGGGGSGGANVANVVTDAFFNGI---KNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHETGH-------------FCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM 224          
BLAST of CX043275 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.163e-25
Identity = 72/217 (33.18%), Postives = 105/217 (48.39%), Query Frame = 2
Query:   95 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDAR--CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXX--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNA-----GRLPG 715
            G G   G    G G  G  +  +++   F  +   +N A   C  + FYT  +F+ AA ++ GF         KREIAAFFA   HET                CYI +++ AS D            PG+ YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM       + H+V++  +  +   +N      G+ PG
Sbjct:   68 GGGGGGGGGGGGGGGSGVSVESVVTEAFFNGI---KNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMN------NVHQVMLQGFGATIRAINGALECNGKNPG 262          
BLAST of CX043275 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.051e-24
Identity = 70/221 (31.67%), Postives = 103/221 (46.61%), Query Frame = 2
Query:   77 GSAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXX--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNA-----GRLPG 715
            G     G     G      G   G   + +  E F + +  +    C  + FYT  +F+ AA+++ GF N       KREIAAFFA   HET                CYI +++ A+ D            PG+ YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM       + H+V+   +  +   +N      G+ PG
Sbjct:   58 GPCWGSGGEAAAGMAGRKAGAGAGVSVESVVTEAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMN------NVHQVMSQGFGATIRAINGALECNGKNPG 259          
BLAST of CX043275 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.640e-23
Identity = 64/181 (35.36%), Postives = 87/181 (48.07%), Query Frame = 2
Query:   92 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ----YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWM 622
            CG+G   G   T        +   I    F + +  + D+ C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +CYI ++  AS D          P      Y+GRGPIQL+WN NY   G A   D L  P+ ++ D V+SFK+A+W+WM
Sbjct:   47 CGTGCQQGPCTTASPPPSNNVNADILTADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGH-------------FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM 214          
The following BLAST results are available for this feature:
BLAST of CX043275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIB_MAIZE7.383e-2634.04Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIA_MAIZE8.163e-2535.00Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI5_ORYSJ8.163e-2533.18Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ4.051e-2431.67Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU7.640e-2335.36Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A06-B12-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043275 ID=CX043275; Name=CX043275; organism=Citrus sinensis; type=EST; length=720bp
GCCCCCCCCTTGCTTTCAAATGAGGCTCATTGGGTCCTTACTAATTTTCT
CTCTAGTTTTATCTTTTGTACTAGGAGGTTCAGCACAGAATTGTGGAAGC
GGCGTTGTGTGCGGTGAACGTGATACTGGCCACGGGACGGATGGCGGTGA
ACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTCCGTATA
GAAATGATGCCCGATGCCCTGCCAGAGGCTTCTACACTTATGATGCTTTT
ATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGGAAATGAAAC
CATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAA
CTACTGGGGGATGGACCGATGCACCTGGTGGAGAATATGCTTGGGGATAT
TGCTATATTAGGCAAGTTAGCCCTGCGTCGTCCGACTACTGTTATCCTTA
CTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGAGGTCCAATTCAAC
TCACTTGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTTGGGGGTGGAC
TTGTTGAACAATCCAGACCTACTTGCCACTGATCCAGTACTATCATTCAA
GTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCC
ACGAAGTCATTATCGACGAATGGAAACCATCAGCAAATGACGTAAACGCC
GGCCGGCTTCCGGGATACGG
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