EY665425

Overview
NameEY665425
Unique NameEY665425
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665425_ssr437 microsatellite EY665425_ssr437:437..446. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665425 vs. ExPASy Swiss-Prot
Match: PSBP_SINAL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba GN=PSBP PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 2.628e-40
Identity = 95/182 (52.20%), Postives = 126/182 (69.23%), Query Frame = 3
Query:   96 MASTQCFLHHHALSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTTLTS*HTMEMDSSCQFPQNETPAKEREFLGQVL*IKNNFDPNSHVSVLITQTEKKSFLDYGSPKEFLNKGDYLRGKKSYSGKNFL*RGF 632
            MA + CFLH  AL+++ AR+S   SSQR+VS  K   +VC+AQ+    E+D S VSRRLALT+L+GAAAVGSKVSPADAAYGE+ANVFGKPK               Q P    P++E E+ GQVL  ++NFD  S+++V++T T+KKS  DYGSP+EFL++ +YL GK++Y G+     GF
Sbjct:    1 MAYSACFLHQSALASSTARSSPSSSSQRYVSISK---LVCKAQQ--THEEDNSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKKNTDFTAYSGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETASEGGF 177          
BLAST of EY665425 vs. ExPASy Swiss-Prot
Match: PSBP_NARPS (Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus pseudonarcissus GN=PSBP PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.594e-37
Identity = 93/192 (48.44%), Postives = 119/192 (61.98%), Query Frame = 3
Query:   96 MASTQCFLHHHA-------LSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTTLTS*HTMEMDS-SCQFPQNETPAKEREFLGQVL*IKNNFDPNSHVSVLITQTEKKSFLDYGSPKEFLNKGDYLRGKKSYSGKNFL*RGFPP 638
            MAST CFLHHHA       LS T + T+     Q H + ++  +  C  +  A+       +SRRLALT+LIG AA+GS+VS ADAAYGESANVFGKPKT  T   T+  D      P    P+KE EF GQVL  ++NFD  S+V V++  T+KKS  DYGSP++FL++ DYL GK++Y GK     GF P
Sbjct:    1 MASTACFLHHHAPSPATSNLSRTRSATNRDEQQQEHSARLQSPEADCATENDAL-------LSRRLALTILIGGAALGSRVSAADAAYGESANVFGKPKTN-TDFQTVTGDGFKILIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMVNPTDKKSIKDYGSPEQFLSQVDYLLGKQAYFGKTISEGGFEP 184          
BLAST of EY665425 vs. ExPASy Swiss-Prot
Match: PSBP_WHEAT (Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum aestivum GN=PSBP PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.999e-34
Identity = 85/181 (46.96%), Postives = 109/181 (60.22%), Query Frame = 3
Query:   96 MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQKQAVQEDDGSAV-SRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTTLTS*HTMEMDSSCQFPQNETPAKEREFLGQVL*IKNNFDPNSHVSVLITQTEKKSFLDYGSPKEFLNKGDYLRGKKSYSGKNFL*RGF 632
            MAST CFLH      + AR ++S R    +  TQ+ VC+AQK      D + V SRR AL++L GAAA+  KVSPA AAYGE+ANVFGK K                 P    P+KEREF GQVL  ++NFD  S++SV+I  T KK+  DYGSP+EFL++  +L G++SY GK     GF
Sbjct:    1 MASTSCFLHQ-----STARLAASARPAPAVGRTQLFVCKAQKNDEAASDAAVVTSRRAALSLLAGAAAIAVKVSPAAAAYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKEREFPGQVLRYEDNFDATSNLSVIINPTTKKTITDYGSPEEFLSQVGFLLGQQSYGGKTDSEGGF 176          

HSP 2 Score: 28.1054 bits (61), Expect = 2.999e-34
Identity = 16/48 (33.33%), Postives = 22/48 (45.83%), Query Frame = 1
Query:  607 GKTSSEGGFHPGSGGNTKILERSTQT----PISFLVVYKKIAEGKKGG 738
            GKT SEGGF   +     +LE S           + V  + A+G +GG
Sbjct:  168 GKTDSEGGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGG 215          
BLAST of EY665425 vs. ExPASy Swiss-Prot
Match: PSBP_BRAJU (Oxygen-evolving enhancer protein 2, chloroplastic (Fragment) OS=Brassica juncea GN=PSBP PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.063e-33
Identity = 75/134 (55.97%), Postives = 96/134 (71.64%), Query Frame = 3
Query:  231 EDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTTLTS*HTMEMDSSCQFPQNETPAKEREFLGQVL*IKNNFDPNSHVSVLITQTEKKSFLDYGSPKEFLNKGDYLRGKKSYSGKNFL*RGF 632
            EDD S VSRRLALT+L+GAAAVGSKVSPADAAYGE+ANVFGKPKT              Q P    P++E E+ GQVL  ++NFD  S+++V++T T+KKS  DYGSP+EFL++ +YL GK++Y G+     GF
Sbjct:    1 EDDTSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFTAINGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETACEGGF 134          
BLAST of EY665425 vs. ExPASy Swiss-Prot
Match: PSBP_CHLRE (Oxygen-evolving enhancer protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBP PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.822e-18
Identity = 66/183 (36.07%), Postives = 94/183 (51.37%), Query Frame = 3
Query:   96 MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTTLTS*HTMEMDSSCQFPQNETPAKEREFLGQVL*IKNNFDPNSHVSVLITQTEKKSFLDYGSPKEFLNKGDYLRGKKSYSGKNFL*RGFPPRK 644
            MA+  C   + A +  P    +S+R       + +V RA         GS VSRR AL    GAAA+ S  SPA+AAYG+SANVFGK               +   P    P+KE +F G +L  ++NFD  +++ V+   T+KK+  D+GS  +FL    YL GK++YSG+     GF P +
Sbjct:    1 MATALC---NKAFAAAPVARPASRR-------SAVVVRAS--------GSDVSRRAALAGFAGAAALVSS-SPANAAYGDSANVFGKVTNKSGFVPYAGDGFALLLPAKWNPSKENDFPGVILRYEDNFDAVNNLVVIAQDTDKKAIADFGSQDKFLESVSYLLGKQAYSGETQSEGGFAPNR 164          
The following BLAST results are available for this feature:
BLAST of EY665425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PSBP_SINAL2.628e-4052.20Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_NARPS1.594e-3748.44Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_WHEAT2.999e-3446.96Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_BRAJU4.063e-3355.97Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_CHLRE4.822e-1836.07Oxygen-evolving enhancer protein 2, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-G07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665425 ID=EY665425; Name=EY665425; organism=Citrus sinensis; type=EST; length=899bp
TACGAATGATTTTTTTTCCTTATTACTTTTATAATTGTTAGTGAAGCCTT
TAGTGAACGAAAAAAAAAAAAAAAGGAAGAGAGCGAAAAGAAAAAATGGC
TTCAACTCAATGCTTCTTGCACCACCATGCACTCTCTACTACACCAGCAA
GAACATCATCATCTCAGCGCCACGTGTCAAACATCAAGCCCACCCAGATT
GTCTGCCGTGCGCAGAAGCAAGCTGTCCAAGAAGATGACGGCAGCGCCGT
CTCCCGCCGTTTGGCTCTGACGGTGCTCATTGGTGCTGCTGCCGTCGGCT
CCAAGGTCTCTCCTGCCGACGCTGCCTACGGTGAATCTGCCAATGTGTTT
GGTAAGCCAAAGACCACACTGACTTCTTAGCATACAATGGAAATGGATTC
AAGCTGTCAATTCCCTCAAAATGAAACCCCAGCAAAAGAGAGAGAGTTCC
TTGGTCAAGTTCTTTAAATAAAAAACAACTTTGATCCCAACAGCCATGTC
TCCGTCTTAATCACCCAAACTGAAAAAAAATCCTTCCTGGACTACGGTTC
CCCCAAAGAATTCCTCAATAAGGGGGACTACTTGCGGGGAAAAAAAAGCT
ATTCCGGGAAAAACTTCCTCTGAAGGGGGTTTCCACCCCGGAAGCGGGGG
CAACACCAAAATTTTGGAGAGGTCCACCCAAACACCCATATCATTTTTGG
TTGTATATAAAAAAATCGCGGAAGGAAAAAAAGGGGGGACCCCCACCCAT
TTACCCCCCCGGTATAGGGGGGAAATTTTTAATTCCCCAGGGCCACCCTG
GAAAAAAAAGGGGGTTAAAGGGAAAAAAAAAATATTGGAAACCCCGGCCA
TTTTTTTCCGGTGGCTTGGAAATATAACAAAATTTTTTATAAAACCCAA
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