CV885630

Overview
NameCV885630
Unique NameCV885630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length950
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885630 vs. ExPASy Swiss-Prot
Match: PEL11_ARATH (Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.451e-60
Identity = 115/212 (54.25%), Postives = 142/212 (66.98%), Query Frame = -2
Query:  314 HVGNRGPSDGDAVSVFSSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSNHDKAILLGATDTFTEDKKMQVTVAFNRFDKGLVQRMPCIRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNKNAKEVTKRMDCSPEEGNGWIWRSEGDVFLNGAYFNASGDPKKQIKYELNDVIKPAPGTEVQRITKFAGALVCKPGQQC 949
            H G    SDGDAV++F   ++W+DH +LS   DGLIDAI GSTAITISN H+++HDK +LLG +D++T+DK MQVT+AFN F +GLVQRMP  R G+ HVVNNDY  WEMYAIGG   PTI SQGNRF A + +  KEVTK  D    +   W WRSEGD+ LNGAYF  SG  +    Y     +   P + V  IT  AG L C+ G++C
Sbjct:  199 HTGWWMQSDGDAVAIFGGKHVWIDHCSLSNCDDGLIDAIHGSTAITISNNHMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPNTRFNKEVTKHEDAPESKWRDWNWRSEGDMLLNGAYFRESG-AEAPSTYARASSLSARPSSLVGSITTTAGTLSCRRGRRC 409          
BLAST of CV885630 vs. ExPASy Swiss-Prot
Match: PEL9_ARATH (Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.475e-60
Identity = 115/210 (54.76%), Postives = 145/210 (69.05%), Query Frame = -2
Query:  314 GNRGPSDGDAVSVFSSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSNHDKAILLGATDTFTEDKKMQVTVAFNRFDKGLVQRMPCIRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNKNAKEVTKRMDCSPEEGNGWIWRSEGDVFLNGAYFNASGDPKKQIKYELNDVIKPAPGTEVQRITKFAGALVCKPGQQC 943
            G RG +DGDA+++F SS+IW+DH +LS   DGL+D + GSTAITISN H ++HD+ +LLG  D++T DK MQVTVA+N F +GL+QRMP  R G+ HVVNNDY  W+MYAIGG   PTI SQGNRF A  N +AKEVTKR+D    E   W WRSE D+ +NGA+F  SG+        L+   KPA  + V  IT  AGAL C+ G+ C
Sbjct:  244 GFRGTADGDAINIFGSSHIWIDHNSLSNCTDGLVDVVNGSTAITISNNHFTHHDEVMLLGHNDSYTRDKMMQVTVAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWKMYAIGGSANPTINSQGNRFAAPKNHSAKEVTKRLDTKGNEWMEWNWRSEKDLLVNGAFFTPSGEGASGDSQTLSLPAKPA--SMVDAITASAGALSCRRGKPC 451          
BLAST of CV885630 vs. ExPASy Swiss-Prot
Match: PEL18_SOLLC (Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 5.514e-60
Identity = 117/213 (54.93%), Postives = 138/213 (64.79%), Query Frame = -2
Query:  314 HVGNRGPSDGDAVSVFSSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSNHDKAILLGATDTFTEDKKMQVTVAFNRFDKGLVQRMPCIRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNKNAKEVTKRMDCSPEEGNGWIWRSEGDVFLNGAYFNASG-DPKKQIKYELNDVIKPAPGTEVQRITKFAGALVCKPGQQC 949
            H G    SDGD +S+F   NIW+DH +LS   DGLIDAI GSTAITISN + ++HDK +LLG +D+FT+DK MQVTVAFN F +GLVQRMP  R G+ HVVNNDY  WEMYAIGG   PTI SQGNRF A + K  KEVTK  D    +   W WRSEGD+ LNGAYF  +G        Y     +   P + V  IT  AG + CK G +C
Sbjct:  192 HSGWWDVSDGDGISIFGGKNIWVDHCSLSNCHDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSFTQDKGMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFLAPNEKYRKEVTKHEDAPESQWRSWNWRSEGDLMLNGAYFRQTGAGASSSSTYARASSLSARPSSLVGSITTNAGPVNCKKGSRC 404          
BLAST of CV885630 vs. ExPASy Swiss-Prot
Match: PEL1_ARATH (Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 7.202e-60
Identity = 114/212 (53.77%), Postives = 143/212 (67.45%), Query Frame = -2
Query:  314 HVGNRGPSDGDAVSVFSSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSNHDKAILLGATDTFTEDKKMQVTVAFNRFDKGLVQRMPCIRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNKNAKEVTKRMDCSPEEGNGWIWRSEGDVFLNGAYFNASGDPKKQIKYELNDVIKPAPGTEVQRITKFAGALVCKPGQQC 949
            H G R  +DGDA+S+F SS++W+DH +LS   DGL+DA+ GSTAITISN HL++H++ +LLG +D++  DK MQVT+A+N F  GL+QRMP  R G+ HVVNNDY  WEMYAIGG   PTI SQGNR+ A  N  AKEVTKR+D       GW WRSEGD+  NGAYF +SG       Y     +     + V  IT  AGAL C+ G+QC
Sbjct:  219 HFGWRTMADGDAISIFGSSHVWIDHNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVMLLGHSDSYMRDKAMQVTIAYNHFGVGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPKNPFAKEVTKRVDTPASHWKGWNWRSEGDLLQNGAYFTSSGAAASG-SYARASSLSAKSSSLVGHITSDAGALPCRRGRQC 429          
BLAST of CV885630 vs. ExPASy Swiss-Prot
Match: PEL15_ARATH (Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 9.406e-60
Identity = 114/212 (53.77%), Postives = 146/212 (68.87%), Query Frame = -2
Query:  314 HVGNRGPSDGDAVSVFSSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSNHDKAILLGATDTFTEDKKMQVTVAFNRFDKGLVQRMPCIRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNKNAKEVTKRMDCSPEEGNGWIWRSEGDVFLNGAYFNASGDPKKQIKYELNDVIKPAPGTEVQRITKFAGALVCKPGQQC 949
            H G R  +DGDAVS+F SS+IW+DH +LS   DGL+DA+ GSTAIT+SN H ++H++ +LLG +D++T+DK MQVT+A+N F +GLVQRMP  R G+ HVVNNDY  WEMYAIGG   PTI SQGNR+ A  ++ AKEVTKR++    E   W WRSEGD+ LNGA+F  SG       Y     +   P + V  IT  AGAL C+ G+ C
Sbjct:  260 HFGWRTMADGDAVSIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITVSNNHFTHHNEVMLLGHSDSYTKDKLMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYAAPMDRFAKEVTKRVETDASEWKKWNWRSEGDLLLNGAFFRPSG-AGASASYGRASSLAAKPSSMVDTITSTAGALGCRKGRPC 470          
BLAST of CV885630 vs. ExPASy Swiss-Prot
Match: PEL56_SOLLC (Probable pectate lyase P56 OS=Solanum lycopersicum GN=LAT56 PE=2 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 1.228e-59
Identity = 112/214 (52.34%), Postives = 148/214 (69.16%), Query Frame = -2
Query:  314 HVGNRGPSDGDAVSVFSSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSNHDKAILLGATDTFTEDKKMQVTVAFNRFDKGLVQRMPCIRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNKNAKEVT--KRMDCSPEEGNGWIWRSEGDVFLNGAYFNASGDPKKQIKYELNDVIKPAPGTEVQRITKFAGALVCKPGQQC 949
            H+G RG  +GDA+S+F+S +IW+DH+++S+A DGLIDA+ GST ITISNCH ++H+K +L GA D   ED+ M++T+A+N F K L QRMP  RFGF H+VNNDY  WE YAIGG  G TI+SQGNRF A D    KEVT  ++   S EE   W W ++GD F NGA F  SGD     K +  ++I+P P ++V  +TKF+GAL CK  + C
Sbjct:  185 HLGLRGADEGDAISIFNSHDIWIDHISMSRATDGLIDAVAGSTNITISNCHFTDHEKVMLFGANDHAEEDRGMKITLAYNHFGKRLDQRMPRCRFGFFHLVNNDYTHWERYAIGGSSGATIISQGNRFIAEDKLLVKEVTYREKSTSSVEEWMKWTWITDGDDFENGATFTPSGDQNLLSKIDHLNLIQPEPSSKVGLLTKFSGALSCKIRRPC 398          
BLAST of CV885630 vs. ExPASy Swiss-Prot
Match: PEL18_ARATH (Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 1.228e-59
Identity = 113/212 (53.30%), Postives = 141/212 (66.51%), Query Frame = -2
Query:  314 HVGNRGPSDGDAVSVFSSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSNHDKAILLGATDTFTEDKKMQVTVAFNRFDKGLVQRMPCIRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNKNAKEVTKRMDCSPEEGNGWIWRSEGDVFLNGAYFNASGDPKKQIKYELNDVIKPAPGTEVQRITKFAGALVCKPGQQC 949
            H G R  SDGD VS+F  S++W+DH + S  +DGLIDAI GSTAIT+SN H+++HDK +LLG +DT++ DK MQVT+AFN F +GLVQRMP  R G+ HVVNNDY  WEMYAIGG   PTI SQGNRF A + + +KEVTK  D    E   W WRS GD+ LNGA+F  SG       Y     +   P + V  +T  +GAL C+ G +C
Sbjct:  198 HFGWRTISDGDGVSIFGGSHVWVDHCSFSNCEDGLIDAIMGSTAITLSNNHMTHHDKVMLLGHSDTYSRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPNIRFSKEVTKHEDAPESEWKRWNWRSSGDLLLNGAFFTPSGGAASS-SYAKASSLGAKPSSLVGPLTSTSGALNCRKGSRC 408          
BLAST of CV885630 vs. ExPASy Swiss-Prot
Match: PEL_TOBAC (Pectate lyase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 2.095e-59
Identity = 112/214 (52.34%), Postives = 145/214 (67.76%), Query Frame = -2
Query:  314 HVGNRGPSDGDAVSVFSSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSNHDKAILLGATDTFTEDKKMQVTVAFNRFDKGLVQRMPCIRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNKNAKEVT--KRMDCSPEEGNGWIWRSEGDVFLNGAYFNASGDPKKQIKYELNDVIKPAPGTEVQRITKFAGALVCKPGQQC 949
            HVG RG  +GD +S+FSS +IW+DH+++S+A DGLIDA+  ST ITISNCH ++H+K +L GA D +  DK M++T+A+N F K L QRMP  RFGF H+VNNDY  WE YAIGG  G TI+SQGNRF A D    KEVT  +++  S  E   W W S+GD   NGA F  SGD     K +  ++IKP P ++V  +TKF+GAL C  G+ C
Sbjct:  184 HVGLRGSDEGDGISIFSSHDIWIDHISMSRATDGLIDAVAASTNITISNCHFTDHEKVMLFGANDHYVLDKDMKITLAYNHFGKRLDQRMPRCRFGFFHLVNNDYTHWERYAIGGSSGATIISQGNRFIAEDELLVKEVTYREKLTASVAEWMKWTWISDGDDMENGATFTPSGDQNLLDKIDHLNLIKPEPSSKVGILTKFSGALSCVKGRPC 397          
BLAST of CV885630 vs. ExPASy Swiss-Prot
Match: PEL8_ARATH (Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 5.161e-58
Identity = 110/212 (51.89%), Postives = 143/212 (67.45%), Query Frame = -2
Query:  314 HVGNRGPSDGDAVSVFSSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSNHDKAILLGATDTFTEDKKMQVTVAFNRFDKGLVQRMPCIRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNKNAKEVTKRMDCSPEEGNGWIWRSEGDVFLNGAYFNASGDPKKQIKYELNDVIKPAPGTEVQRITKFAGALVCKPGQQC 949
            H G R  +DGDA+S+F SS+IW+DH +LS   DGL+DA+  STAIT+SN   ++H++ +LLG +D++T DK MQVT+A+N F +GL+QRMP  R G+ HVVNNDY  WEMYAIGG  GPTI SQGNRF A  N  AKEVTKR      +   W WRSEGD+FLNGA+F  SG       Y     +     + V  +T ++GAL C+ G++C
Sbjct:  206 HYGFRSMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMSSTAITVSNNFFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAGPTINSQGNRFLAPVNPFAKEVTKREYTGESKWKHWNWRSEGDLFLNGAFFTRSG-AGAGANYARASSLSAKSSSLVGTMTSYSGALNCRAGRRC 416          
BLAST of CV885630 vs. ExPASy Swiss-Prot
Match: PEL10_ARATH (Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 5.161e-58
Identity = 112/212 (52.83%), Postives = 143/212 (67.45%), Query Frame = -2
Query:  314 HVGNRGPSDGDAVSVFSSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSNHDKAILLGATDTFTEDKKMQVTVAFNRFDKGLVQRMPCIRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQGNRFFASDNKNAKEVTKRMDCSPEEGNGWIWRSEGDVFLNGAYFNASGDPKKQIKYELNDVIKPAPGTEVQRITKFAGALVCKPGQQC 949
            H G R  +DGDA+S+F SS+IW+DH +LS   DGLIDAI GSTAITISN ++++H++ +L+G +D++T DK MQVT+A+N F +GL+QRMP  R G+ HVVNNDY  W MYAIGG   PTI SQGNRF A  N  AKEVTKR+     E   W WRS+GD+ LNGAYF  SG       Y     +   P + V  +T  +GAL C+ G +C
Sbjct:  230 HYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITISNNYMTHHNEVMLMGHSDSYTRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRFLAPGNPFAKEVTKRVGSWQGEWKQWNWRSQGDLMLNGAYFTKSG-AAAPASYARASSLGAKPASVVSMLTYSSGALKCRIGMRC 440          
The following BLAST results are available for this feature:
BLAST of CV885630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
PEL11_ARATH1.451e-6054.25Putative pectate lyase 11 OS=Arabidopsis thaliana ... [more]
PEL9_ARATH2.475e-6054.76Probable pectate lyase 9 OS=Arabidopsis thaliana G... [more]
PEL18_SOLLC5.514e-6054.93Probable pectate lyase P18 OS=Solanum lycopersicum... [more]
PEL1_ARATH7.202e-6053.77Probable pectate lyase 1 OS=Arabidopsis thaliana G... [more]
PEL15_ARATH9.406e-6053.77Probable pectate lyase 15 OS=Arabidopsis thaliana ... [more]
PEL56_SOLLC1.228e-5952.34Probable pectate lyase P56 OS=Solanum lycopersicum... [more]
PEL18_ARATH1.228e-5953.30Probable pectate lyase 18 OS=Arabidopsis thaliana ... [more]
PEL_TOBAC2.095e-5952.34Pectate lyase OS=Nicotiana tabacum PE=2 SV=1[more]
PEL8_ARATH5.161e-5851.89Probable pectate lyase 8 OS=Arabidopsis thaliana G... [more]
PEL10_ARATH5.161e-5852.83Probable pectate lyase 10 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_016G07_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T7_G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885630 ID=CV885630; Name=CV885630; organism=Citrus sinensis; type=EST; length=950bp
TTATTAATTTTGTACATCCATAAAGAAACACGGTTACCATTATGAATAAG
CACATCAAACACGTTGATTGATTGCATTGGACAAAAAAAAAAAAGCCTTA
ATGTTGGATATGGTTATAGAAACTAACCAAATCCATGAAAAAATTGGACT
AAATGAGAGGATTACTGTTCATTTATTTTCTTCATCCTCTCATTTTCCGT
CCCAATTTTCTGTCTAATATTTTGGCCATCATTTTGAACCAATAGCAGTG
AGCTAGCCTTAGGCTATGGCTAGGTCACTGTTTCTCTATCAATGCAAAAA
ATCTAGTAAATTAACATTGCTGGCCTGGCTTGCAGACAAGTGCTCCAGCA
AATTTTGTGATCCTCTGAACTTCTGTTCCTGGCGCTGGTTTAATCACATC
ATTCAGTTCGTATTTGATTTGCTTTTTCGGGTCACCGGATGCATTGAAGT
AAGCCCCATTCAAGAATACATCTCCCTCTGATCTCCATATCCAACCATTC
CCTTCTTCAGGGCTGCAGTCCATTCTCTTTGTCACCTCTTTGGCATTCTT
GTTATCTGAGGCAAAGAACCTATTACCCTGGCTAAGAATGGTGGGGCCTT
TGAGACCACCAATTGCATACATTTCCCATTGATTGTAATCATTGTTCACA
ACATGAGCGAAACCAAATCTGATGCATGGCATTCTTTGCACCAATCCCTT
ATCAAAGCGGTTGAATGCTACAGTCACTTGCATCTTTTTATCTTCCGTGA
ACGTATCGGTTGCGCCTAGCAAAATTGCCTTATCATGGTTGGAGAGGTGG
CAGTTTGAAATGGTGATGGCTGTAGATCCTTGAATGGCATCAATAAGCCC
ATCTTGGGCTTTAGATAATGTAAGATGATCAAGCCAAATATTTGACGAAC
TAAATACTGAAACAGCGTCCCCATCACTTGGACCTCTATTTCCCACATGA
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