CX043273

Overview
NameCX043273
Unique NameCX043273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EI3F2_DROPS (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.007e-15
Identity = 53/209 (25.36%), Postives = 100/209 (47.85%), Query Frame = -1
Query:  240 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPN--PVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDL-----RMIEAERVGFDILKST-SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLN 842
            ++Y + ML+      PQE ++GWFSTG  V+  +  +HE+Y R+  N  P+HL +DT  R      + + +V   +        F  +P+D+      ++    +G    + T    +L  +LE +    + +   ++ + +Y++D +     PDN+VGR L + + S+P +    F  + N             S+ +TQL L+E+L+
Sbjct:   75 LKYDNDMLELAQIAYPQEKVLGWFSTGKSVSAAAVELHEYYERQCHNGQPLHLLMDTSLRGQRMNTRIFCAVATGVPGGTKGLMFSLLPMDIYFGSPDIVAMRHMGRQCAQPTKDAGRLLPELEQVVDATKDIQQKLDLVLRYINDILNRKRRPDNTVGRALHDVLTSVPMVEAERFRHMFNTNMRDLLMSLTLSSMIKTQLQLSERLS 283          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EI3F2_DROME (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila melanogaster GN=eIF3-S5-2 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.007e-15
Identity = 50/208 (24.04%), Postives = 96/208 (46.15%), Query Frame = -1
Query:  240 YHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREV--PNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPSDLEGMEVLMERLLTLIND-------IYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLN 836
            Y   +L+ ++   P E ++GWF TG  V+  ++LIH++Y RE     P+HL VD   +N   + + Y +V + +        F  +PL++    ++ V    ++  S  +    +E     + +++    D       + +Y++D +     PDN VGR L   + ++P L    F  + N             ++ +TQL ++EKL+
Sbjct:   73 YASEVLELNMFAYPNERVLGWFCTGKSVSRSASLIHDYYVRECCEGQPLHLLVDAALKNQRLSTRLYCAVEMGVPGGTKGLMFSLVPLEISNENSDLVALRCIEKQSQQQASKQMERFVPELAQVVDATRDMQHRLDLVLRYINDVLARKKKPDNVVGRSLYAALTAVPLLDSDKFRVMFNTNLRDMLMAITLSTMIKTQLEISEKLS 280          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EI3F2_DROYA (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila yakuba GN=eIF3-S5-2 PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.301e-14
Identity = 51/213 (23.94%), Postives = 98/213 (46.01%), Query Frame = -1
Query:  240 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVP--NPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPSDLEGMEVLMERLLTLIND----------IYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLN 842
            I Y    L+ ++     E ++GWFSTG  V+  ++L+H++Y RE     PVHL +D   ++   + + Y +V + +        F  +PL++    ++ V    L+S     L    + ME  +  L+ +++           + +Y++D +     PDN +GR L   + ++P L    F  + N             ++ +TQL ++EKL+
Sbjct:   71 ISYASEFLELNMLTYSNERVLGWFSTGKSVSRSASLLHDYYARECGEIQPVHLVMDATLKSQRLSTRLYCAVEIGVPGGTKGLMFSLVPLEISNGNSDLVA---LRSLEKQSLQQGTKQMERFLPELVQVVDATRDIQQRLDLVLRYINDVLARKRKPDNVIGRALYAALTAVPLLDSEKFRLMFNTNLRDMLMAITLSTMIKTQLEISEKLS 280          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EI3F2_DROSE (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila sechellia GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.301e-14
Identity = 49/208 (23.56%), Postives = 95/208 (45.67%), Query Frame = -1
Query:  240 YHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREV--PNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPSDLEGMEVLMERLLTLINDI-------YKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLN 836
            Y   +L+ ++   P E ++GWF TG  V+  ++LIH++Y RE     P+HL VD   +N   + + Y +V + +        F  +PL++    ++ V    ++  S  +    +E     + +++    +I        +Y++D +     PDN VGR L   + ++P      F  + N             ++ +TQL ++EKL+
Sbjct:   73 YASEVLELNMFAYPNERVLGWFCTGKSVSRSASLIHDYYVRECGERQPLHLLVDASLKNQRLSTRLYCAVEMGVPGGTKGLMFSLVPLEISSENSDLVAVRCIEKQSQQQASKQMERFVPELVQVVDATRNIQQRLDLLLRYINDVLARKKKPDNLVGRSLQAALTAVPLFDSEKFRLMFNTNVRDMLMAITLSTMIKTQLEISEKLS 280          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EI3F2_DROPE (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila persimilis GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.219e-14
Identity = 52/209 (24.88%), Postives = 96/209 (45.93%), Query Frame = -1
Query:  240 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPN--PVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFD------ILKSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLN 842
            ++Y + ML+      PQE +VGWFSTG  V+  +  +HE+Y R+  +  P+HL +DT  R      + + +V   +        F  +P+D+     + V          L      +L  +LE +    + +   ++ + +Y++D +     PDN+VGR L + + S+P +    F  + N             S+ + QL L+E+L+
Sbjct:   75 LKYDNDMLELAQIAYPQEKVVGWFSTGKAVSAAAVELHEYYERQCHSGQPLHLLMDTSLRGQRMNTRIFCAVATGVPGGTKGLMFSLLPMDIYFGSPDIVAMRHMGRQCALPPKEAGRLLPELEQVVDATKDIQQKLDLVLRYINDILNRKRRPDNTVGRALHDVLTSVPMVEAERFRHMFNTNMRDLLMSLTLSSMIKVQLQLSERLS 283          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EI3F2_DROGR (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila grimshawi GN=eIF3-S5-2 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.786e-14
Identity = 55/210 (26.19%), Postives = 99/210 (47.14%), Query Frame = -1
Query:  240 EYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPN--PVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAE-RVGFDILKSTSVDK-------LPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLN 839
            +Y   M + +   NPQE IVGW++T   ++  SA +H +Y RE  +  P+HL VD   R G    + Y  V + +        F  +PL     E +  V   ++++ +++        LP  +  +E+ +  L   ++ + +Y+ D +    +PD  VGR L E + S+P +   +F  + N             ++ +TQL L+EKL+
Sbjct:   77 QYASEMYELNQINNPQEKIVGWYNTAKSLSRSSAALHAYYARECADAQPLHLLVDLKLRGGRLNTRLYCGVPIGVPGGTKGLMFTLLPLLKMGTEIDDSVALRVMQNYALNPAKQPGRILPELMSVLEITLA-LEEKLDLLLRYIKDVLARKRLPDKRVGRALYEALTSVPMMDAESFRLMFNTNVRDILLSITLSTMIKTQLELSEKLS 285          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: PSD7_DICDI (26S proteasome non-ATPase regulatory subunit 7 OS=Dictyostelium discoideum GN=psmD7 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.591e-12
Identity = 43/174 (24.71%), Postives = 84/174 (48.28%), Query Frame = -1
Query:  330 YHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSV-NLSLGDRQLAAQFQEIPLDLRMIEAERVGFDIL----KSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDK 836
            +H  M     K+N +E +VGW+STG  +      I+E + R  PNPV + +D   +      K+YV+V  ++    +   +FQ IP  +  +EAE +  + L    K +S+  L + +   ++ ++ LLT + ++  Y+    +G   P++ +   + + +   P L+     K
Sbjct:   72 FHENMFAMFKKINARENVVGWYSTGPKIRPADQDINELFRRYTPNPVMVIIDVAPKELGIPTKSYVTVEEINKDTSESTMRFQHIPSSIDAVEAEEICIEHLLRDVKDSSISSLTTQITDKKISLKHLLTNLQEMQHYLKLVCDGTLPPNHQIIGYIQDIINLSPNLNANEISK 245          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_CRYNE (Eukaryotic translation initiation factor 3 subunit F OS=Cryptococcus neoformans GN=CNF04540 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.077e-12
Identity = 51/160 (31.87%), Postives = 80/160 (50.00%), Query Frame = -1
Query:  375 YHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREV-PNP-VHLTVDTGF-RNGEGT-VKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPS--DLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSE 836
            +   M+    K   +EVIVGW+++   V   SA+I E++  E  P P VHLTVDT    +G+G  VK +VS  L L  +   + F  +P+ ++  ++ER   D+L +      P+   L  +   + +L +LI+    YV     G   PD  +GR L E
Sbjct:   91 FQQDMVNFLAKNGTKEVIVGWYASQKTVNSNSAIIQEYFSFETNPYPAVHLTVDTDIEESGKGLGVKGWVSQPLGLTSKSECSVFVPVPVSIKYADSERAALDLLTAPQPTPSPALPPLPTLSNSLSQLSSLIDQCLAYVQSVNNGSQTPDVEIGRYLLE 250          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_YARLI (Eukaryotic translation initiation factor 3 subunit F OS=Yarrowia lipolytica GN=YALI0E26851g PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.713e-12
Identity = 55/213 (25.82%), Postives = 94/213 (44.13%), Query Frame = -1
Query:  237 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRM---IEAERVGFDILKSTSVD-----KLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNS--VGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLNT 842
            +EY+ TML  H K  P+EVIVGW++T   +   S LIH++Y +    P +HLTV+          + YV+  + +   + +     +P+   +     A+R   + + S          L SDL  +E  + ++L ++  +  YV   + G    + +  VG+ L  T+   P L     + L N             +  +TQL L+ KL T
Sbjct:   80 LEYNPTMLALHRKAFPKEVIVGWYATSSELNTFSGLIHDYYTQLDGTPAIHLTVEAANLADTLLPRTYVASAVGIDPSKNSGNCVFVPISNEVKFNDSADRAALEAISSARESPERSINLTSDLANLENSLTQVLDMLERVQTYVARVISGEESSEKAQQVGKQLLSTLTLTPSLDAQNLEALFNSHLQDVLMVVYLANTVKTQLQLSAKLTT 292          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_NEUCR (Eukaryotic translation initiation factor 3 subunit F OS=Neurospora crassa GN=1A9.200 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.713e-12
Identity = 55/215 (25.58%), Postives = 101/215 (46.98%), Query Frame = -1
Query:  234 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCR----EVPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQ--FQEIPLDLRMIEAERVGFDILKSTSVDK-----LPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLNTA 842
            +EY   ML   LK NP+E ++GW++T   +   SALI  F+        P+P VHLT+ T         K Y+S  +++   + A    F E+P  L   +AER     + + +  +     + SD+E +   +E +  L+  +  +V + ++     ++++G+ L   ++  PK+S  A +   N             +  RTQ+ L+++L TA
Sbjct:   94 VEYQKNMLALTLKANPRETLLGWYTTSHELNSFSALIQNFFASPETGTFPHPAVHLTIGTE-AGATIDTKTYISAPVAVSPERAAESCLFIEVPHKLLFTDAERGALGSVAAAADAESRSAPVVSDIENLAQALETVSDLLERVSGFVGEVLDEERDGNHALGQYLMNALSLAPKVSNLAIENDFNNHIQDVLMVSYLANTIRTQIELSQRLATA 307          
The following BLAST results are available for this feature:
BLAST of CX043273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
EI3F2_DROPS2.007e-1525.36Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROME2.007e-1524.04Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROYA1.301e-1423.94Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROSE1.301e-1423.56Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROPE2.219e-1424.88Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROGR3.786e-1426.19Eukaryotic translation initiation factor 3 subunit... [more]
PSD7_DICDI1.591e-1224.7126S proteasome non-ATPase regulatory subunit 7 OS=... [more]
EIF3F_CRYNE2.077e-1231.88Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_YARLI2.713e-1225.82Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_NEUCR2.713e-1225.58Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A05_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A05-B10-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043273 ID=CX043273; Name=CX043273; organism=Citrus sinensis; type=EST; length=842bp
AAAAAATTAATGCTAAATCTGACCAAAATGGATATTTGTTTCTCAATAGA
ACCCAAACCATTACAAAGCAATCTTGTTAAAATTGTGCAACTAATTTAAA
CTCTAGCTCATAAAATACAGCCTTTCCAGAAAGTAAATACGCACATTCCT
CAGAGTTTGTGATATATTAATTCAAACTCAAATCGCCTTAGCACATGAAT
TCATATGTCAGCGAGAAATTATGGCATCTGAGCAGCGGTGTTCAACTTTT
CTGCTAAGCTGAGCTGGGTCCTGGTGATACTTGACAAATATAGCAAGAGC
AACTGGTCCTGTAGGCTGTCATTTACAAGCTTGTCAAAAGCTGGAGGTGA
CAGTTTGGGAAGGGAGGCTACAGTCTCTGAAAGAATACGCCCTACACTAT
TATCAGGTACAGCATGCCCTTCCACAGTGTCATCAACATATTTGTAGATA
TCGTTAATAAGAGTTAGTAGCCGTTCCATCAGGACTTCCATTCCTTCCAA
ATCACTAGGGAGTTTGTCAACCGATGTTGACTTCAGAATATCGAATCCAA
CTCGCTCAGCTTCAATCATTCGAAGATCAAGAGGGATTTCTTGAAATTGT
GCAGCAAGCTGTCGATCTCCAAGAGACAAATTGACAGAAACATAAGCTTT
TACAGTACCCTCTCCATTTCTGAATCCTGTATCTACAGTCAGGTGGACAG
GATTAGGAACTTCGCGACAATAGAATTCATGGATCAAGGCACTGCCACCA
GTGACTCCCAACCCTGTAGAAAACCATCCAACAATCACTTCCTGAGGATT
CACCTTTAGGTGTGACTTTAACATGGTATGATGGTATTCAAT
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