CV885603

Overview
NameCV885603
Unique NameCV885603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9634 contig Csv1_Contig9634:22..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885603 vs. ExPASy Swiss-Prot
Match: RS7_DICDI (40S ribosomal protein S7 OS=Dictyostelium discoideum GN=rps7 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.558e-47
Identity = 100/184 (54.35%), Postives = 132/184 (71.74%), Query Frame = 3
Query:   81 KKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ---RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDY 623
            KKI K      TEFE TVAQAL DLEN N ELK DLKDL +    ++DV+ ++KA+V++VP+R  K Y KI  +L  E+EKK  GK V+ IA RRI+R P   + ++   RP SRT+ AVHDA+L+D+V+P  IVG+R+RYRLDGSK+ KI+LD KE  +   K++SFS VY KLTGK+VVF++
Sbjct:    4 KKIIKPAGKVATEFENTVAQALVDLENNNAELK-DLKDLSVCSVKEVDVAESKKAVVIFVPFRQLKNYNKIQQKLTYEVEKKLGGKQVMFIAQRRIIRKPASNNKIKMQKRPISRTIKAVHDAILDDLVFPNTIVGRRLRYRLDGSKLHKIYLDRKEMLSNISKVDSFSAVYHKLTGKEVVFEF 186          
BLAST of CV885603 vs. ExPASy Swiss-Prot
Match: RS7_SPOFR (40S ribosomal protein S7 OS=Spodoptera frugiperda GN=RpS7 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.035e-46
Identity = 96/185 (51.89%), Postives = 140/185 (75.68%), Query Frame = 3
Query:   84 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV----QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 626
            KI K   AEP  FE +++QAL +LE TN +LK+ L++LYI +A ++++  N+K+I++YVP    KA++KI  RLVRELEKKFSGK VV I  R+I+  P   + V    +RPRSRTLT+V+DA+LED+V+PAEIVGKR+R +LDGS++IK+ LD  ++   E+K+++F  VY+KLTG++V F++P
Sbjct:    4 KIIKASAAEPDVFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFIGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRIKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 186          
BLAST of CV885603 vs. ExPASy Swiss-Prot
Match: RS7_CAEEL (40S ribosomal protein S7 OS=Caenorhabditis elegans GN=rps-7 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.306e-46
Identity = 94/186 (50.54%), Postives = 134/186 (72.04%), Query Frame = 3
Query:   84 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ-----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 626
            K+ K      +E E+ V+QAL DLE TN +++S LK+LYI    ++++ GN+ AI++YVP    KA+ KIH  LVRELEKKF G+D++++A RRI+  P++GS  +     RPRSRTLTAVHDA L+++VYPAE+VG+R+R +LDG K+ K+ LD   + N  +K+  F+ VYRKLTGKDV F++P
Sbjct:    7 KLLKSDGKVVSEIEKQVSQALIDLE-TNDDVQSQLKELYIVGVKEVEL-GNKSAIIIYVPVPQLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPAEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFP 190          
BLAST of CV885603 vs. ExPASy Swiss-Prot
Match: RS7_DROME (40S ribosomal protein S7 OS=Drosophila melanogaster GN=RpS7 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.710e-46
Identity = 93/185 (50.27%), Postives = 142/185 (76.76%), Query Frame = 3
Query:   84 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSA----VQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 626
            KI K   ++P +FE+++AQAL +LE  N +LK  L+DL+I +A +++  G++KA+++YVP   +K ++KI   LVRELEKKFSGK VV+IA R+I+  P + +      +RPRSRTLTAV+DA+LED+V+PAEIVGKR+R +LDGS+++K+ LD  ++   E+K+++F+ VY+KLTG+DV F++P
Sbjct:    6 KIIKPGGSDPDDFEKSIAQALVELE-ANSDLKPYLRDLHITRAREIEF-GSKKAVIIYVPIPQQKVFQKIQIILVRELEKKFSGKHVVVIAERKILPKPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQLVKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFP 188          
BLAST of CV885603 vs. ExPASy Swiss-Prot
Match: RS7_MANSE (40S ribosomal protein S7 OS=Manduca sexta GN=RpS7 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.495e-45
Identity = 94/185 (50.81%), Postives = 138/185 (74.59%), Query Frame = 3
Query:   84 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV----QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 626
            KI K    E   FE +++QAL +LE TN +LK+ L++LYI +A ++++  N+K+I++YVP    KA++KI  RLVRELEKKFSGK VV I  R+I+  P   + V    +RPRSRTLT+V+DA+LED+V+PAEIVGKR+R +LDGS++IK+ LD  ++   E+K+++F  VY+KLTG++V F++P
Sbjct:    4 KILKAGGTEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFIGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 186          
BLAST of CV885603 vs. ExPASy Swiss-Prot
Match: RS7_DROYA (40S ribosomal protein S7 OS=Drosophila yakuba GN=RpS7 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.952e-45
Identity = 92/185 (49.73%), Postives = 141/185 (76.22%), Query Frame = 3
Query:   84 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSA----VQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 626
            KI K   ++P +FE+++AQAL +LE  N +LK  L+DL+I +A +++  G++KA+++YVP   +K ++KI   LVRELEKKFSGK VV+I  R+I+  P + +      +RPRSRTLTAV+DA+LED+V+PAEIVGKR+R +LDGS+++K+ LD  ++   E+K+++F+ VY+KLTG+DV F++P
Sbjct:    6 KIIKPGGSDPDDFEKSIAQALVELE-ANSDLKPYLRDLHITRAREIEF-GSKKAVIIYVPIPQQKVFQKIQIILVRELEKKFSGKHVVVIGERKILPKPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQLVKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFP 188          
BLAST of CV885603 vs. ExPASy Swiss-Prot
Match: RS7_NEUCR (40S ribosomal protein S7 OS=Neurospora crassa GN=rps-7 PE=3 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 5.680e-45
Identity = 89/182 (48.90%), Postives = 131/182 (71.98%), Query Frame = 3
Query:  111 PTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ------RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITDA 638
            P+E E  VA AL+DLE+   +LK+ L+ L    A +++V   +KAIV++VP    + + ++  RL RELEKKFS + V+++A+RRI+  PK+ S  +      RPRSRTLTAVHDA+L D+VYP EIVGKR+R + DGSK +K+ LD KER + +Y+L+++S VYR+LTGK+V+F++P+  A
Sbjct:   19 PSELETAVAGALYDLESNTADLKAALRPLQFVSAREIEVGHGKKAIVIFVPVPSLQGFHRVQQRLTRELEKKFSDRHVLIVASRRILPRPKRSSRSRNTLKQKRPRSRTLTAVHDAILTDLVYPVEIVGKRLRVKEDGSKTLKVILDEKERGSVDYRLDTYSAVYRRLTGKNVLFEFPLVSA 200          
BLAST of CV885603 vs. ExPASy Swiss-Prot
Match: RS7B_YEAST (40S ribosomal protein S7-B OS=Saccharomyces cerevisiae GN=RPS7B PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.158e-44
Identity = 90/174 (51.72%), Postives = 123/174 (70.69%), Query Frame = 3
Query:  111 PTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGS--AVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 626
            P+E E  VA+   DLE+++ ELK+DL+ L I    ++DV+G +KA+V++VP     AY K+ ++L RELEKKF  + V+ +A RRI+  P + S    +RPRSRTLTAVHD +LED+V+P EIVGKRVRY + G+KI K+ LD K+    +YKLESF  VY KLTGK +VF+ P
Sbjct:   13 PSELELQVAKTFIDLESSSPELKADLRPLQIKSIREIDVTGGKKALVLFVPVPALSAYHKVQTKLTRELEKKFPDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKVLEDMVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIP 186          
BLAST of CV885603 vs. ExPASy Swiss-Prot
Match: RS7A_YEAST (40S ribosomal protein S7-A OS=Saccharomyces cerevisiae GN=RPS7A PE=1 SV=4)

HSP 1 Score: 176.792 bits (447), Expect = 1.399e-43
Identity = 88/174 (50.57%), Postives = 121/174 (69.54%), Query Frame = 3
Query:  111 PTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGS--AVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 626
            PTE E  VAQA  +LEN++ ELK++L+ L      ++DV+G +KA+ ++VP      + K+ ++L RELEKKF  + V+ +A RRI+  P + S    +RPRSRTLTAVHD +LED+V+P EIVGKRVRY + G+KI K+ LD K+    +YKLESF  VY KLTGK +VF+ P
Sbjct:   13 PTELELQVAQAFVELENSSPELKAELRPLQFKSIREIDVAGGKKALAIFVPVPSLAGFHKVQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIP 186          
The following BLAST results are available for this feature:
BLAST of CV885603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS7_DICDI3.558e-4754.3540S ribosomal protein S7 OS=Dictyostelium discoide... [more]
RS7_SPOFR1.035e-4651.8940S ribosomal protein S7 OS=Spodoptera frugiperda ... [more]
RS7_CAEEL2.306e-4650.5440S ribosomal protein S7 OS=Caenorhabditis elegans... [more]
RS7_DROME6.710e-4650.2740S ribosomal protein S7 OS=Drosophila melanogaste... [more]
RS7_MANSE1.495e-4550.8140S ribosomal protein S7 OS=Manduca sexta GN=RpS7 ... [more]
RS7_DROYA1.952e-4549.7340S ribosomal protein S7 OS=Drosophila yakuba GN=R... [more]
RS7_NEUCR5.680e-4548.9040S ribosomal protein S7 OS=Neurospora crassa GN=r... [more]
RS7B_YEAST2.158e-4451.7240S ribosomal protein S7-B OS=Saccharomyces cerevi... [more]
RS7A_YEAST1.399e-4350.5740S ribosomal protein S7-A OS=Saccharomyces cerevi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_016F05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T3_F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885603 ID=CV885603; Name=CV885603; organism=Citrus sinensis; type=EST; length=866bp
GCAAGCTTGTGTGTTTTTTTCTACTCGTGCATACAGATCTAAAAGCTTCG
CTGCGAGCTGTCAAGATGTTCACGACTAAGAAGAAAATCCAAAAAGACAA
GGATGCCGAACCTACTGAGTTTGAGGAGACAGTTGCCCAGGCACTGTTTG
ATTTGGAGAATACCAACCAGGAGCTTAAAAGTGACTTGAAAGATCTTTAC
ATTAATCAAGCCATTCAAATGGATGTTTCTGGAAACCGCAAGGCAATTGT
TGTCTATGTGCCTTACAGATTGAGGAAGGCTTATCGGAAGATTCATTCTC
GCCTTGTGAGAGAGCTGGAGAAGAAATTCAGTGGCAAGGATGTTGTACTC
ATTGCCACCCGAAGGATAGTCAGGCCACCAAAGAAAGGCTCTGCTGTTCA
GAGACCTCGCAGTCGCACACTCACAGCTGTTCATGATGCCATGCTTGAAG
ATGTAGTTTACCCAGCTGAGATTGTTGGAAAACGTGTCAGATACCGTCTC
GATGGATCCAAAATAATCAAGATTTTCTTGGATCCAAAGGAGAGGAACAA
CACGGAGTACAAGTTGGAGTCTTTTTCAGGGGTTTACAGAAAGCTTACCG
GCAAAGACGTGGTTTTTGATTATCCAATTACAGATGCCTGAAGAGTTGTT
GCAGATGATCATTTGTGTTTGTCACTGTTTATTTTGTTGCACTATAATTT
TGATTTGGATAGGGTACTATTTAAAATTTTGACTCTTAAATTTGGTATGA
CATCATTTTGCATAGGACAGATGAAGCTTTATGAATTTCTTTTTGTTTCT
TCATTTCATGAAATTGTTGAGCTGAGAAACATCGTGCCTTCTAGTTGAAG
TGAGATCTGTTTACTT
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