EY665416

Overview
NameEY665416
Unique NameEY665416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1026
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_SYNP4 (Ferredoxin OS=Synechococcus sp. (strain PCC 7418) PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 5.270e-19
Identity = 45/82 (54.88%), Postives = 52/82 (63.41%), Query Frame = 2
Query:  215 EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            E I  PDD +ILD AEE G+DLPYSCRAGACS+C GK+  G +            I   + LTC AYP SD TI TH+EEEL
Sbjct:   17 ETIEVPDDEYILDVAEEEGIDLPYSCRAGACSTCAGKIKEGEIDQSDQSFLDDDQIEAGYVLTCVAYPASDCTIITHQEEEL 98          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_ODOSI (Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 6.882e-19
Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 2
Query:  221 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            I+C DD F+LDAAEE G++LPYSCRAGACS+C GKV  G +            +G  F LTC AYP SD T+  H+E+EL
Sbjct:   19 IDCNDDVFLLDAAEEQGIELPYSCRAGACSTCAGKVTEGDIDQSEQTFLDDDQVGAGFVLTCIAYPKSDCTVLVHQEDEL 98          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_PORUM (Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.174e-18
Identity = 47/93 (50.54%), Postives = 60/93 (64.52%), Query Frame = 2
Query:  197 LHLRGEEE-----INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            +HL  +EE      +C +D++ILDAAEE G++LPYSCRAGACS+C GKV  GTV            + + + LTC AYP SD TI TH E+EL
Sbjct:    5 IHLVSKEEGIDVTFDCSEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDEQMLKGYVLTCIAYPESDCTILTHVEQEL 97          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_THEVL (Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=petF1 PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.776e-18
Identity = 44/83 (53.01%), Postives = 54/83 (65.06%), Query Frame = 2
Query:  212 EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            E  I+ P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G V            I + F LTC AYP SD  I T++EEEL
Sbjct:   15 ETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          

HSP 2 Score: 23.8682 bits (50), Expect = 1.776e-18
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  172 MATYKVKLITPEG 210
            MATYKV L+ P+G
Sbjct:    1 MATYKVTLVRPDG 13          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_THEEB (Ferredoxin-1 OS=Thermosynechococcus elongatus (strain BP-1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.776e-18
Identity = 44/83 (53.01%), Postives = 54/83 (65.06%), Query Frame = 2
Query:  212 EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            E  I+ P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G V            I + F LTC AYP SD  I T++EEEL
Sbjct:   15 ETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          

HSP 2 Score: 23.8682 bits (50), Expect = 1.776e-18
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  172 MATYKVKLITPEG 210
            MATYKV L+ P+G
Sbjct:    1 MATYKVTLVRPDG 13          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_SYNEN (Ferredoxin-1 OS=Synechococcus elongatus naegeli GN=petF1 PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.776e-18
Identity = 44/83 (53.01%), Postives = 54/83 (65.06%), Query Frame = 2
Query:  212 EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            E  I+ P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G V            I + F LTC AYP SD  I T++EEEL
Sbjct:   15 ETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          

HSP 2 Score: 23.8682 bits (50), Expect = 1.776e-18
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  172 MATYKVKLITPEG 210
            MATYKV L+ P+G
Sbjct:    1 MATYKVTLVRPDG 13          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER2_NOSMU (Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 2.002e-18
Identity = 45/84 (53.57%), Postives = 55/84 (65.48%), Query Frame = 2
Query:  212 EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEELA 463
            +E I  PDD +ILDAAEEAGLDLP+SCR+G+CSSC G +  GTV            I     LTC AYPTS+  IETH+E+ +A
Sbjct:   16 DETIEVPDDEYILDAAEEAGLDLPFSCRSGSCSSCNGILKKGTVDQSDQNFLDDDQIAAGNVLTCVAYPTSNCEIETHREDAIA 99          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER_RHOPL (Ferredoxin OS=Rhodymenia palmata PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.826e-18
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  209 GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            G EEI   + +++LD+AE+ G+DLPYSCRAGACS+C G V  GTV            + + F LTC AYPTSD  I+TH+EE+L
Sbjct:   13 GVEEIEGDETTYVLDSAEDQGIDLPYSCRAGACSTCAGIVELGTVDQSDQSFLDDDQLNDSFVLTCVAYPTSDCQIKTHQEEKL 96          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.776e-17
Identity = 39/83 (46.99%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  212 EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            E E   PDD++IL+AAE AG++LP+SCRAG+CS+C G++ +G V            + E + LTC +YP +D  I THKEE+L
Sbjct:   72 EHEFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDL 154          
BLAST of EY665416 vs. ExPASy Swiss-Prot
Match: FER4_ARATH (Probable ferredoxin-4, chloroplastic OS=Arabidopsis thaliana GN=FD4 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.007e-17
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 2
Query:  212 EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVXXXXXXXXXXXXIGERFCLTCAAYPTSDVTIETHKEEEL 460
            E+EI   +D  IL++AE AGL+LPYSCR+G C +C GK+VSG V            I + + LTC A P  D  + THK+ +L
Sbjct:   65 EQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147          

HSP 2 Score: 31.5722 bits (70), Expect = 4.007e-17
Identity = 20/47 (42.55%), Postives = 26/47 (55.32%), Query Frame = 1
Query:   76 RSKPTATSLKAMPNMGQAIFGLKANRG--GRVVAMATYKVKLITPEG 210
            R  P+   L    N     FGL ++RG  G+V A  + KVKLI+PEG
Sbjct:   18 RISPSQAQLTTRLN-NTTYFGLSSSRGNFGKVFAKESRKVKLISPEG 63          
The following BLAST results are available for this feature:
BLAST of EY665416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_SYNP45.270e-1954.88Ferredoxin OS=Synechococcus sp. (strain PCC 7418) ... [more]
FER_ODOSI6.882e-1953.75Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2[more]
FER_PORUM1.174e-1850.54Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV... [more]
FER_THEVL1.776e-1853.01Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=pe... [more]
FER_THEEB1.776e-1853.01Ferredoxin-1 OS=Thermosynechococcus elongatus (str... [more]
FER_SYNEN1.776e-1853.01Ferredoxin-1 OS=Synechococcus elongatus naegeli GN... [more]
FER2_NOSMU2.002e-1853.57Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2[more]
FER_RHOPL5.826e-1851.19Ferredoxin OS=Rhodymenia palmata PE=1 SV=1[more]
FER6_MAIZE3.776e-1746.99Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FER4_ARATH4.007e-1744.58Probable ferredoxin-4, chloroplastic OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-F10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665416 ID=EY665416; Name=EY665416; organism=Citrus sinensis; type=EST; length=1026bp
CAACTGTCCCTTCCTTGAGCAAGAGCAGCAACCATGGCCACCCTCTCAAG
CGCCATGGTCAGCACCTCATTCATCAGAAGCAAGCCTACAGCGACCAGCC
TCAAAGCCATGCCTAACATGGGTCAGGCTATATTTGGCCTCAAAGCCAAC
AGAGGTGGCCGTGTTGTAGCCATGGCTACATACAAAGTCAAGCTCATTAC
ACCTGAGGGGAGAGGAAGAAATCAACTGTCCTGATGACTCGTTTATTCTT
GATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGG
GGCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGT
CGGAGCAAAGCTCTCTGGATGATGATCAAATTGGAGAAAGGTTTTGTCTC
ACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAGAGACTCACAAGGA
AGAGGAGCTCGCTGGTTATAATGTGCTCTTGAATCTCATAATATCTTCTC
TTTATGTGTTGTGTTTTGCTGATAATTTTATGCTTTGAAAGGAAATTGAG
TATTTGAGAAGATTCTGGAATGTGTTTTTATTCTTGTTGCAAAAAATTGT
TGAATTGCACCGGCCAGAATGCCCTCGACCTAAAAGGGGAGTTCCCCTCC
ATCCAAACTGGTACCTTTCAAATTAAAATTCAACAAAAACAAAATTTTCC
GATAAAAAATCCACAGATAAAAAAACAATAAAAAGATTGTAAAGAATGAA
GATGACGAGAAAAATGAAGTGAACCATGGACGTTGATGATGAAAAGAGAT
GGGGGGGGGGGGGCCTAGGAGAAATAAGGAGGGGGGGGTTCTCTCTTTAT
ATCCTATACATAACGTGGTATTGACGGGGGGGACCCTGTTCACATCCCCA
ATGAACACTTCTCAGGATAAAAAACCCCAAACTCCAATTACAAGTGGAAA
ACCCCTTGAATTATGGGAGGTCGTTATTACATATATCTGTCTTTTTTTCT
GCAANATAATAAGGAGTGTAAATATA
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