CV885541

Overview
NameCV885541
Unique NameCV885541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885541 vs. ExPASy Swiss-Prot
Match: H4_SCHPO (Histone H4 OS=Schizosaccharomyces pombe GN=hhf1 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.052e-33
Identity = 68/78 (87.18%), Postives = 76/78 (97.44%), Query Frame = -1
Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 402
            +LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHA+RKTVT++DVVY+LKRQGRT+Y
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDVVYSLKRQGRTIY 99          
BLAST of CV885541 vs. ExPASy Swiss-Prot
Match: H4_CANGA (Histone H4 OS=Candida glabrata GN=HHF1 PE=3 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 3.500e-33
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = -1
Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 402
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEE R VLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99          
BLAST of CV885541 vs. ExPASy Swiss-Prot
Match: H4_ARXAD (Histone H4 OS=Arxula adeninivorans GN=ahsb4 PE=3 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 3.500e-33
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = -1
Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 402
            +LRDNIQGITKPAIRRLARRGGVKRIS LIYEETR VLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISALIYEETRSVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99          
BLAST of CV885541 vs. ExPASy Swiss-Prot
Match: H4_YEAST (Histone H4 OS=Saccharomyces cerevisiae GN=HHF1 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 7.797e-33
Identity = 69/78 (88.46%), Postives = 75/78 (96.15%), Query Frame = -1
Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 402
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEE R VLK FLE+VIRD+VTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99          
BLAST of CV885541 vs. ExPASy Swiss-Prot
Match: H41_ASHGO (Histone H4.1 OS=Ashbya gossypii GN=HHF1 PE=3 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 7.797e-33
Identity = 69/78 (88.46%), Postives = 75/78 (96.15%), Query Frame = -1
Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 402
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYE+ R VLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEDVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99          
BLAST of CV885541 vs. ExPASy Swiss-Prot
Match: H42_ASHGO (Histone H4.2 OS=Ashbya gossypii GN=HHF2 PE=3 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 3.276e-31
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = -1
Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 402
            +LRDNIQGITKPAI RLARRGGVKRISGLIYE+ R VLK  LE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAILRLARRGGVKRISGLIYEDVRAVLKSVLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99          
BLAST of CV885541 vs. ExPASy Swiss-Prot
Match: H4_STYLE (Histone H4 OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 7.298e-31
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = -1
Query:  169 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 399
            L++ I GITKPAIRRLARRGGVKRIS LIYEETR VL+ FLENVIRD+VTYTEHA+RKTVTA+DVVYALKRQGRTLY
Sbjct:   24 LKETIMGITKPAIRRLARRGGVKRISSLIYEETRNVLRSFLENVIRDSVTYTEHAKRKTVTALDVVYALKRQGRTLY 100          
BLAST of CV885541 vs. ExPASy Swiss-Prot
Match: H4_OXYNO (Histone H4 OS=Oxytricha nova PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 7.298e-31
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = -1
Query:  169 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 399
            L++ I GITKPAIRRLARRGGVKRIS LIYEETR VL+ FLENVIRD+VTYTEHA+RKTVTA+DVVYALKRQGRTLY
Sbjct:   24 LKETIMGITKPAIRRLARRGGVKRISSLIYEETRNVLRSFLENVIRDSVTYTEHAKRKTVTALDVVYALKRQGRTLY 100          
BLAST of CV885541 vs. ExPASy Swiss-Prot
Match: H41_BLEJA (Histone H4-1 (Fragment) OS=Blepharisma japonicum PE=1 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 2.123e-30
Identity = 65/75 (86.67%), Postives = 73/75 (97.33%), Query Frame = -1
Query:  181 VLRDNIQGITKPAIRRLARRGGVKR-ISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 402
            V+R+NIQGITKPAIRRLARRGGVKR +SGL+Y+ETR VLK+FLENV+RDAVTYTEHARRKTVTA+DVVYALKRQG
Sbjct:   24 VIRENIQGITKPAIRRLARRGGVKRTLSGLVYDETRNVLKVFLENVVRDAVTYTEHARRKTVTALDVVYALKRQG 98          
BLAST of CV885541 vs. ExPASy Swiss-Prot
Match: H4_EUPCR (Histone H4 OS=Euplotes crassus PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 6.178e-30
Identity = 64/77 (83.12%), Postives = 72/77 (93.51%), Query Frame = -1
Query:  169 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 399
            LR+ I G+TKPAIRRLARRGGVKRIS L+YEETR VLK FLE+VIRD+VTYTEHA+RKTVTA+DVVYALKRQG+TLY
Sbjct:   27 LRETILGVTKPAIRRLARRGGVKRISSLVYEETRAVLKGFLESVIRDSVTYTEHAKRKTVTALDVVYALKRQGKTLY 103          
The following BLAST results are available for this feature:
BLAST of CV885541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_SCHPO2.052e-3387.18Histone H4 OS=Schizosaccharomyces pombe GN=hhf1 PE... [more]
H4_CANGA3.500e-3389.74Histone H4 OS=Candida glabrata GN=HHF1 PE=3 SV=3[more]
H4_ARXAD3.500e-3389.74Histone H4 OS=Arxula adeninivorans GN=ahsb4 PE=3 S... [more]
H4_YEAST7.797e-3388.46Histone H4 OS=Saccharomyces cerevisiae GN=HHF1 PE=... [more]
H41_ASHGO7.797e-3388.46Histone H4.1 OS=Ashbya gossypii GN=HHF1 PE=3 SV=3[more]
H42_ASHGO3.276e-3185.90Histone H4.2 OS=Ashbya gossypii GN=HHF2 PE=3 SV=3[more]
H4_STYLE7.298e-3185.71Histone H4 OS=Stylonychia lemnae PE=3 SV=2[more]
H4_OXYNO7.298e-3185.71Histone H4 OS=Oxytricha nova PE=3 SV=2[more]
H41_BLEJA2.123e-3086.67Histone H4-1 (Fragment) OS=Blepharisma japonicum P... [more]
H4_EUPCR6.178e-3083.12Histone H4 OS=Euplotes crassus PE=1 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_016C08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T7_C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885541 ID=CV885541; Name=CV885541; organism=Citrus sinensis; type=EST; length=537bp
TTTTTTTTTTTTTTTGCCTCAATATAAAGATAAGATTTAACTTGATAGAA
TTACAAAGCAGCAACCTAATAACAAACTACTAAGAGCCCCATCTACCAGA
TCAAGATCTAGAGTCAAGATCTATTAACATTTAATTCCAGAACCCTAAGA
CAATTAACCCCCAAATCCATAAAGAGTCCTGCCCTGCCTCTTGAGAGCGT
AAACGACGTCCATCGCGGTCACGGTCTTTCTCCTGGCGTGCTCAGTGTAG
GTCACGGCGTCACGGATGACGTTCTCCAAGAATATCTTCAGGACGCCACG
TGTCTCCTCGTAGATCAAGCCGCTGATACGCTTGACTCCACCTCTACGAG
CCAAACGCCGGATTGCCGGCTTTGTGATACCCTGAATGTTATCGCGAAGC
ACCTTACGGTGACGCTTGGCGCCTCCCTTTCCCAATCCCTTGCCTCCCTT
ACCGCGCCCAGACATTTTAGCGAGGAACTTAAAAGACTTTCCGCTGTTCC
TCGAAAGAGAATTTGGATAGAGAAATTTGAATGTGCC
back to top