CV885539

Overview
NameCV885539
Unique NameCV885539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_SALEP (Bifunctional polymyxin resistance protein arnA OS=Salmonella enteritidis PT4 (strain P125109) GN=arnA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.835e-35
Identity = 79/207 (38.16%), Postives = 120/207 (57.97%), Query Frame = -2
Query:  164 EDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 772
            ED S+ I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + LGW P  ++ D +E TL +
Sbjct:  446 EDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDF 648          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_SALDC (Bifunctional polymyxin resistance protein arnA OS=Salmonella dublin (strain CT_02021853) GN=arnA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.835e-35
Identity = 79/207 (38.16%), Postives = 120/207 (57.97%), Query Frame = -2
Query:  164 EDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 772
            ED S+ I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + LGW P  ++ D +E TL +
Sbjct:  446 EDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDF 648          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_SALCH (Bifunctional polymyxin resistance protein arnA OS=Salmonella choleraesuis GN=arnA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.835e-35
Identity = 79/207 (38.16%), Postives = 120/207 (57.97%), Query Frame = -2
Query:  164 EDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 772
            ED S+ I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    +     G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V+S+ +YG+GY D   R P +    + LGW P  ++ D +E TL +
Sbjct:  446 EDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---SLSAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVASRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDF 648          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_SALA4 (Bifunctional polymyxin resistance protein arnA OS=Salmonella agona (strain SL483) GN=arnA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.835e-35
Identity = 79/207 (38.16%), Postives = 120/207 (57.97%), Query Frame = -2
Query:  164 EDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 772
            ED S+ I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + LGW P  ++ D +E TL +
Sbjct:  446 EDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDF 648          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_PSEU2 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=arnA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.835e-35
Identity = 81/206 (39.32%), Postives = 118/206 (57.28%), Query Frame = -2
Query:  164 EDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYA--KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 772
            ED S+ I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D    +D    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +IEN   R NG I N+GNP NE ++RQL E +   +    + G         +V S+ FYG+GY D   R P +    + +GW P   L + +  TL +
Sbjct:  450 EDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYG-QKGLQFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVVDGIEALARIIENRDGRCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRGHFPPFAGFREVESQSFYGKGYQDVSHRTPSIDNAKKLIGWTPGIELSETIGKTLDF 651          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_PHOLL (Bifunctional polymyxin resistance protein arnA OS=Photorhabdus luminescens subsp. laumondii GN=arnA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.116e-34
Identity = 81/215 (37.67%), Postives = 120/215 (55.81%), Query Frame = -2
Query:  137 EDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYA--KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAI 772
            ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KLVDGG+ +R F  I D IEA+  +IEN     +G I N+GNP NE ++RQLAE++ + +   ++            V S  +YG+GY D + R P +    + L W P   +   +  TL +  R   E +
Sbjct:  446 EDDSRLIVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLKFTLFRPFNWMGPRLD---NLNSARIGSSRAITQLILNLVEGSPIKLVDGGEQKRCFTDINDGIEALFRIIENREGLCDGQIINIGNPTNEASIRQLAEILLDSFEDHELRDHFPPFAGFKKVESGSYYGKGYQDVEHRKPSIKNAERLLDWKPTIDMKQTINETLDFFLRGAVEEL 657          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_SHIF8 (Bifunctional polymyxin resistance protein arnA OS=Shigella flexneri serotype 5b (strain 8401) GN=arnA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.457e-34
Identity = 79/217 (36.41%), Postives = 123/217 (56.68%), Query Frame = -2
Query:  152 EDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 772
            ED S+ I G + K RW Y+ +KQL++R+I+A G + GL+FT+  PFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFLPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSCYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_SALG2 (Bifunctional polymyxin resistance protein arnA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=arnA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.457e-34
Identity = 78/207 (37.68%), Postives = 120/207 (57.97%), Query Frame = -2
Query:  164 EDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 772
            ED S+ I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    ++    G  R +     +L+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + LGW P  ++ D +E TL +
Sbjct:  446 EDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---SLNAARIGSSRAITQLILSLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDF 648          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_PSEFS (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain SBW25) GN=arnA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.457e-34
Identity = 81/206 (39.32%), Postives = 117/206 (56.80%), Query Frame = -2
Query:  164 EDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARA-NGHIFNVGNPHNEVTVRQLAEMMTEVYA--KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 772
            ED S+ + G + KQRW Y+ +KQL++R+I+A GA+ GL FT+ RPFNW+GPR+D    +D    G  R +     NL+   P++L DGG+ +R F  I D IEA+  +I+N   A NG I N+GNP NE ++RQL E +   +    + G         DV SK FYG GY D   R P +    + L W P   + + + +TL +
Sbjct:  449 EDTSNLVVGPVNKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGIEALARIIDNDNDACNGQIINIGNPENEASIRQLGEELLRQFEAHPLRGNFPPFAGFRDVESKAFYGTGYQDVAHRKPSIENAKRLLNWEPTVEMSETIGNTLDF 650          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_PSEF5 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=arnA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.457e-34
Identity = 81/206 (39.32%), Postives = 117/206 (56.80%), Query Frame = -2
Query:  164 EDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPAR-ANGHIFNVGNPHNEVTVRQLAEMMTEVYA--KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 772
            ED S+ I G I KQRW Y+ +KQL++R+I+A GA+ GL FT+ RPFNW+GPR+D    +D    G  R +     NL+   P++L DGG+ +R F  I D IEA+  +++N     NG I N+GNP NE ++RQL E +   +    + G         DV SK FYG GY D + R P +    + L W P   + + + +TL +
Sbjct:  449 EDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGIEALARIVDNENDCCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRGNFPPFAGFRDVESKAFYGAGYQDVEHRKPSIDNAKRLLNWEPTVEMSETIGNTLDF 650          
The following BLAST results are available for this feature:
BLAST of CV885539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ARNA_SALEP3.835e-3538.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALDC3.835e-3538.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALCH3.835e-3538.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALA43.835e-3538.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEU23.835e-3539.32Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PHOLL1.116e-3437.67Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHIF81.457e-3436.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALG21.457e-3437.68Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEFS1.457e-3439.32Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEF51.457e-3439.32Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_016C06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T7_C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885539 ID=CV885539; Name=CV885539; organism=Citrus sinensis; type=EST; length=830bp
AAAATGTAGAGTATATTCGAAACAACCGTTCAGATATATTCAAGACTAAC
TCAAAAAAGAATTTAAATGTTTGCCACAAGCATCTGAACACTATATCTCC
TCAGCTGGATGCAACTGGTTTTGCCACGGCCTGCTTTATGGCCTCCGCAT
ATGTCCTGTGCTGATAGGTAAGGGTTGATTCAAGCAAGTCCCAAAGTGAG
GTCTTCGGGTTCCAACCAAGCTGTTGATTTATAATGGTCATGTCTGGAAT
TCTCTTGTCACTATCATCATATCCTTCACCATAAAATTCTTTGGAGCTGA
CATCAACTGTTGGCTCCTCCAAAGCAGCCTCTCCACTCACCTTTGCATAC
ACCTCAGTCATCATCTCAGCAAGCTGTCGAACTGTAACTTCATTGTGGGG
GTTGCCCACATTGAAAATATGACCATTGGCCCTTGCTGGATTTTCAATCA
TTAATAGAACAGCTTCAATAGCATCCTTTATGTAAATAAAAGTCCTCTGA
GATTGGCCACCGTCGACAAGCTTGAGTGGCTGCCGGCGAAGGAGATTGTT
ACTAAAGCATGCCAGAACCCTTGGAACACCCTCACTTGGACCATCAATGC
CGGGAATGAAGTCCATCCTCGGACCAATCCAGTTAAAGGGCCTCACAATG
GTGAACTCAAGACCATTCTCTGCACCCTCAGCATAAATCAGCCTTTCAAT
CAATTGCTTTGCACATGCATACGACCACCTCTGCTTCTCAATAGAGCCAA
AAATGCAGGAGGAGGCATCTTCTTTAAGAACATAGTAAGCAGGATCCTGC
CGAAGAGGACTATCTTTAGGAAGAAAGCCT
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