CV885539

Overview
NameCV885539
Unique NameCV885539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAB (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=arnA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.611e-33
Identity = 87/232 (37.50%), Postives = 125/232 (53.88%), Query Frame = -2
Query:  128 QDPAYYVLKEDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLT-YQHRTYAEAIKQA 799
            QDP +    ED S+ + G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    +D    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +I+N   R +G I N+GNP NE ++RQL E +   +      A+    A   E    V S+ FYG+GY D   R P +    + L W P   L + +  TL  + H    E   QA
Sbjct:  442 QDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSIDNARRLLDWQPTIELRETIGKTLDFFLHEALREREAQA 662          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA8 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain LESB58) GN=arnA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.611e-33
Identity = 87/232 (37.50%), Postives = 125/232 (53.88%), Query Frame = -2
Query:  128 QDPAYYVLKEDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLT-YQHRTYAEAIKQA 799
            QDP +    ED S+ + G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    +D    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +I+N   R +G I N+GNP NE ++RQL E +   +      A+    A   E    V S+ FYG+GY D   R P +    + L W P   L + +  TL  + H    E   QA
Sbjct:  442 QDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSIDNARRLLDWQPTIELRETIGKTLDFFLHEALREREAQA 662          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_AERS4 (Bifunctional polymyxin resistance protein arnA OS=Aeromonas salmonicida (strain A449) GN=arnA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.611e-33
Identity = 79/206 (38.35%), Postives = 115/206 (55.83%), Query Frame = -2
Query:  164 EDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYA--KVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 772
            ED S  I G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    +D    G  R +     NL+   P++LVDGG  +R F  I+D IEA+  +IEN   R +G I N+G+P NE ++ Q+AE++   +    +            V SK FYG+GY D   R P +    + L W P   + + +  TL +
Sbjct:  448 EDESRLIVGPIHKQRWIYSVSKQLLDRVIWAYGKKEGLNFTLFRPFNWMGPRLD---SLDSARIGSSRAITQLILNLVDGTPIQLVDGGAQKRCFTDIEDGIEALFRIIENKGNRCDGQIINIGSPDNEASILQMAEVLLGKFEAHPLRHHFPPFAGFKRVESKSFYGDGYQDVSHRRPSIKNARRLLDWEPTIEMEETIGKTLDF 650          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA7 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain PA7) GN=arnA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.689e-33
Identity = 86/232 (37.07%), Postives = 125/232 (53.88%), Query Frame = -2
Query:  128 QDPAYYVLKEDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLT-YQHRTYAEAIKQA 799
            QDP +    ED S+ + G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    ++    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +I+N   R +G I N+GNP NE ++RQL E +   +      A+    A   E    V S+ FYG+GY D   R P +    + L W P   L + +  TL  + H    E   QA
Sbjct:  442 QDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFTLFRPFNWMGPRLD---RLESARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSIENARRLLDWQPAIELRETIGKTLDFFLHEALREREAQA 662          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: ARNA_WIGBR (Bifunctional polymyxin resistance protein arnA OS=Wigglesworthia glossinidia brevipalpis GN=arnA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.184e-32
Identity = 78/213 (36.62%), Postives = 117/213 (54.93%), Query Frame = -2
Query:  164 EDASSCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENP-ARANGHIFNVGNPHNEVTVRQLAEMMTEV---------YAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 772
            E+ S+ + G+I+ QRW Y+ +KQL++R+I+A G +N L FTI RPFNWIGP +D     +  +    RV      NL+   P+ +V+ G  +R F  I D IEA+  +I+N   + N  I N+GNPHNE T+ QL +++  +         + K SG   L       S   +YGEGY D D+R P++ I  + L W PKT +   L   + +
Sbjct:  445 EENSNLVTGAIKNQRWIYSSSKQLLDRIIWAYGVKNNLNFTIFRPFNWIGPGLDDFKIAEKQN---ARVTTQIIFNLINGLPVTIVNNGNQKRCFTDIDDGIEALFEIIKNKNNKCNKKIINIGNPHNEYTIMQLTKIIINIIYSNNRNYNFPKFSGFNML-------SGTNYYGEGYQDIDRRKPNIDIAKKLLNWTPKTKIRITLRKIINF 647          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.327e-11
Identity = 56/206 (27.18%), Postives = 89/206 (43.20%), Query Frame = -2
Query:  116 RWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYA-EAIKQAVAKP 730
            R  Y   K++ E + YA   + G+E  + R FN  GPRM    G         RV++ F    L+ +PL +   G   R F Y+ D +  ++ ++ +   +     N+GNP  E T+ + A+++  +    SG           S  +F  E  DD  KR PD+      LGW P   L + L   + Y  +    +A  Q + KP
Sbjct:  228 RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDG---------RVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP---VNLGNPE-EHTILEFAQLIKNLVG--SG-----------SEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKP 407          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.327e-11
Identity = 56/206 (27.18%), Postives = 89/206 (43.20%), Query Frame = -2
Query:  116 RWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYA-EAIKQAVAKP 730
            R  Y   K++ E + YA   + G+E  + R FN  GPRM    G         RV++ F    L+ +PL +   G   R F Y+ D +  ++ ++ +   +     N+GNP  E T+ + A+++  +    SG           S  +F  E  DD  KR PD+      LGW P   L + L   + Y  +    +A  Q + KP
Sbjct:  228 RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDG---------RVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP---VNLGNPE-EHTILEFAQLIKNLVG--SG-----------SEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKP 407          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.327e-11
Identity = 56/206 (27.18%), Postives = 89/206 (43.20%), Query Frame = -2
Query:  116 RWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYA-EAIKQAVAKP 730
            R  Y   K++ E + YA   + G+E  + R FN  GPRM    G         RV++ F    L+ +PL +   G   R F Y+ D +  ++ ++ +   +     N+GNP  E T+ + A+++  +    SG           S  +F  E  DD  KR PD+      LGW P   L + L   + Y  +    +A  Q + KP
Sbjct:  228 RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDG---------RVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP---VNLGNPE-EHTILEFAQLIKNLVG--SG-----------SEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKP 407          
BLAST of CV885539 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.327e-11
Identity = 56/206 (27.18%), Postives = 89/206 (43.20%), Query Frame = -2
Query:  116 RWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYA-EAIKQAVAKP 730
            R  Y   K++ E + YA   + G+E  + R FN  GPRM    G         RV++ F    L+ +PL +   G   R F Y+ D +  ++ ++ +   +     N+GNP  E T+ + A+++  +    SG           S  +F  E  DD  KR PD+      LGW P   L + L   + Y  +    +A  Q + KP
Sbjct:  228 RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDG---------RVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP---VNLGNPE-EHTILEFAQLIKNLVG--SG-----------SEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQYIPKP 407          
The following BLAST results are available for this feature:
BLAST of CV885539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ARNA_PSEAB1.611e-3337.50Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEA81.611e-3337.50Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_AERS41.611e-3338.35Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEA74.689e-3337.07Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_WIGBR5.184e-3236.62Bifunctional polymyxin resistance protein arnA OS=... [more]
UXS1_RAT1.327e-1127.18UDP-glucuronic acid decarboxylase 1 OS=Rattus norv... [more]
UXS1_PONAB1.327e-1127.18UDP-glucuronic acid decarboxylase 1 OS=Pongo abeli... [more]
UXS1_MOUSE1.327e-1127.18UDP-glucuronic acid decarboxylase 1 OS=Mus musculu... [more]
UXS1_HUMAN1.327e-1127.18UDP-glucuronic acid decarboxylase 1 OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_016C06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T7_C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885539 ID=CV885539; Name=CV885539; organism=Citrus sinensis; type=EST; length=830bp
AAAATGTAGAGTATATTCGAAACAACCGTTCAGATATATTCAAGACTAAC
TCAAAAAAGAATTTAAATGTTTGCCACAAGCATCTGAACACTATATCTCC
TCAGCTGGATGCAACTGGTTTTGCCACGGCCTGCTTTATGGCCTCCGCAT
ATGTCCTGTGCTGATAGGTAAGGGTTGATTCAAGCAAGTCCCAAAGTGAG
GTCTTCGGGTTCCAACCAAGCTGTTGATTTATAATGGTCATGTCTGGAAT
TCTCTTGTCACTATCATCATATCCTTCACCATAAAATTCTTTGGAGCTGA
CATCAACTGTTGGCTCCTCCAAAGCAGCCTCTCCACTCACCTTTGCATAC
ACCTCAGTCATCATCTCAGCAAGCTGTCGAACTGTAACTTCATTGTGGGG
GTTGCCCACATTGAAAATATGACCATTGGCCCTTGCTGGATTTTCAATCA
TTAATAGAACAGCTTCAATAGCATCCTTTATGTAAATAAAAGTCCTCTGA
GATTGGCCACCGTCGACAAGCTTGAGTGGCTGCCGGCGAAGGAGATTGTT
ACTAAAGCATGCCAGAACCCTTGGAACACCCTCACTTGGACCATCAATGC
CGGGAATGAAGTCCATCCTCGGACCAATCCAGTTAAAGGGCCTCACAATG
GTGAACTCAAGACCATTCTCTGCACCCTCAGCATAAATCAGCCTTTCAAT
CAATTGCTTTGCACATGCATACGACCACCTCTGCTTCTCAATAGAGCCAA
AAATGCAGGAGGAGGCATCTTCTTTAAGAACATAGTAAGCAGGATCCTGC
CGAAGAGGACTATCTTTAGGAAGAAAGCCT
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