CV885517 | Citrus Genome Database

Overview


Name	CV885517
Unique Name	CV885517
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	883

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library UCRCS04-UCR	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CV885517 vs. ExPASy Swiss-Prot
Match: CYB_ANGRO (Cytochrome b OS=Anguilla rostrata GN=mt-cyb PE=3 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 7.677e-45
Identity = 109/270 (40.37%), Postives = 134/270 (49.63%), Query Frame = 1

Query:    4 ILNLPTPARIRFI*NFGSLLIICLINQILTGLFLAFHYKTDINLAFQXXXXXXXXXXFG*LIRSFHANGASXXXXXXXXXXXXXXXXNSFNFKXXXXXXXXXXXXXXXXAFVGYVLP*GQISF*GATVITNLLSAIPYLXXXXXXXXXXXXXXXXATLTRXXXXXXXXXXXXXXXXXXXXXXXXXTGSNNPLGINRNFDKITFSPYXXXXXXXXXXXXXXXXXXXXXXXXXXXNDHNNFIIANPIITPNHIQPE*YFLFSYSILRAIPNK 813
            +++LPTP+ I    NFGSLL +CLI+QILTGLFLA HY +DI+ AF           +G LIR+ HANGAS                 S+ +K                AFVGYVLP GQ+SF GATVITNLLSA+PY+                ATLTR                         TGSNNP+G+N + DKI F PY                            D +NF  ANP++TP HI+PE YFLF+Y+ILR+IPNK
Sbjct:   18 LVDLPTPSNISAWWNFGSLLGLCLISQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICLYLHIARGLYYGSYLYKETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNSLVQWIWGGFSVDNATLTRFFAFHFLFPFVVAGATMLHLLFLHETGSNNPVGLNSDADKIPFHPYFSYKDLLGFIIMLTALTMLALFYPNLLGDPDNFTPANPMVTPPHIKPEWYFLFAYAILRSIPNK 287

[Close]

BLAST of CV885517 vs. ExPASy Swiss-Prot
Match: CYB_ANGRE (Cytochrome b OS=Anguilla reinhardtii GN=mt-cyb PE=3 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 7.677e-45
Identity = 109/270 (40.37%), Postives = 134/270 (49.63%), Query Frame = 1

Query:    4 ILNLPTPARIRFI*NFGSLLIICLINQILTGLFLAFHYKTDINLAFQXXXXXXXXXXFG*LIRSFHANGASXXXXXXXXXXXXXXXXNSFNFKXXXXXXXXXXXXXXXXAFVGYVLP*GQISF*GATVITNLLSAIPYLXXXXXXXXXXXXXXXXATLTRXXXXXXXXXXXXXXXXXXXXXXXXXTGSNNPLGINRNFDKITFSPYXXXXXXXXXXXXXXXXXXXXXXXXXXXNDHNNFIIANPIITPNHIQPE*YFLFSYSILRAIPNK 813
            +++LPTP+ I    NFGSLL +CLI+QILTGLFLA HY +DI+ AF           +G LIR+ HANGAS                 S+ +K                AFVGYVLP GQ+SF GATVITNLLSA+PY+                ATLTR                         TGSNNP+G+N + DKI F PY                            D +NF  ANP++TP HI+PE YFLF+Y+ILR+IPNK
Sbjct:   18 LVDLPTPSNISAWWNFGSLLGLCLISQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICLYLHIARGLYYGSYLYKETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNSLVQWIWGGFSVDNATLTRFFAFHFLFPFVVAGATMIHLLFLHETGSNNPVGLNSDADKIPFHPYFSYKDLLGFIIMLTALTMLALFYPNLLGDPDNFTPANPMVTPPHIKPEWYFLFAYAILRSIPNK 287

[Close]

BLAST of CV885517 vs. ExPASy Swiss-Prot
Match: CYB_ANGMO (Cytochrome b OS=Anguilla mossambica GN=mt-cyb PE=3 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 7.677e-45
Identity = 109/270 (40.37%), Postives = 134/270 (49.63%), Query Frame = 1

Query:    4 ILNLPTPARIRFI*NFGSLLIICLINQILTGLFLAFHYKTDINLAFQXXXXXXXXXXFG*LIRSFHANGASXXXXXXXXXXXXXXXXNSFNFKXXXXXXXXXXXXXXXXAFVGYVLP*GQISF*GATVITNLLSAIPYLXXXXXXXXXXXXXXXXATLTRXXXXXXXXXXXXXXXXXXXXXXXXXTGSNNPLGINRNFDKITFSPYXXXXXXXXXXXXXXXXXXXXXXXXXXXNDHNNFIIANPIITPNHIQPE*YFLFSYSILRAIPNK 813
            +++LPTP+ I    NFGSLL +CLI+QILTGLFLA HY +DI+ AF           +G LIR+ HANGAS                 S+ +K                AFVGYVLP GQ+SF GATVITNLLSA+PY+                ATLTR                         TGSNNP+G+N + DKI F PY                            D +NF  ANP++TP HI+PE YFLF+Y+ILR+IPNK
Sbjct:   18 LVDLPTPSNISAWWNFGSLLGLCLISQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICLYLHIARGLYYGSYLYKETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDSLVQWIWGGFSVDNATLTRFFAFHFLFPFVVAGATMLHLLFLHETGSNNPVGLNSDADKIPFHPYFSYKDLLGFIIMLTALTMLALFYPNLLGDPDNFTPANPMVTPPHIKPEWYFLFAYAILRSIPNK 287

[Close]

BLAST of CV885517 vs. ExPASy Swiss-Prot
Match: CYB_TYPNA (Cytochrome b OS=Typhlonectes natans GN=mt-cyb PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.003e-44
Identity = 107/270 (39.63%), Postives = 131/270 (48.52%), Query Frame = 1

Query:    4 ILNLPTPARIRFI*NFGSLLIICLINQILTGLFLAFHYKTDINLAFQXXXXXXXXXXFG*LIRSFHANGASXXXXXXXXXXXXXXXXNSFNFKXXXXXXXXXXXXXXXXAFVGYVLP*GQISF*GATVITNLLSAIPYLXXXXXXXXXXXXXXXXATLTRXXXXXXXXXXXXXXXXXXXXXXXXXTGSNNPLGINRNFDKITFSPYXXXXXXXXXXXXXXXXXXXXXXXXXXXNDHNNFIIANPIITPNHIQPE*YFLFSYSILRAIPNK 813
            +++LPTP+ I ++ N+GSLL +CL+ QILTGLFLA HY  D   AF           +G L+R+ HANGAS                 S+ FK                AFVGYVLP GQ+SF GATVITN+LSAIPY+                ATLTR                         TGSNNP G+N N DKI F PY                           +D  NF  ANP++TP HI+PE YFLF+Y+ILR+IPNK
Sbjct:   19 LIDLPTPSNISYLWNYGSLLGLCLMTQILTGLFLAMHYTADTATAFSSLAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGIYYGSYLFKETWNIGVILLLLVMATAFVGYVLPWGQMSFWGATVITNILSAIPYIGNNLVQWVWGGFAVDNATLTRFFTFHFLLPFLIAGTSMLHLLFLHETGSNNPTGLNSNSDKIPFHPYFSYKDTFGFMIMLAALALLSTTNPNLMSDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 288

[Close]

BLAST of CV885517 vs. ExPASy Swiss-Prot
Match: CYB_PAGMA (Cytochrome b OS=Pagrus major GN=mt-cyb PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.003e-44
Identity = 109/270 (40.37%), Postives = 133/270 (49.26%), Query Frame = 1

Query:    4 ILNLPTPARIRFI*NFGSLLIICLINQILTGLFLAFHYKTDINLAFQXXXXXXXXXXFG*LIRSFHANGASXXXXXXXXXXXXXXXXNSFNFKXXXXXXXXXXXXXXXXAFVGYVLP*GQISF*GATVITNLLSAIPYLXXXXXXXXXXXXXXXXATLTRXXXXXXXXXXXXXXXXXXXXXXXXXTGSNNPLGINRNFDKITFSPYXXXXXXXXXXXXXXXXXXXXXXXXXXXNDHNNFIIANPIITPNHIQPE*YFLFSYSILRAIPNK 813
            +++LP P+ I    NFGSLL +CLI+QILTGLFLA HY +DI  AF           +G LIR+ HANGAS                 S+ +K                AFVGYVLP GQ+SF GATVITNLLSA+PY+                ATLTR                         TGSNNPLG+N + DKI+F PY                            D +NF  ANP++TP HI+PE YFLF+Y+ILR+IPNK
Sbjct:   18 LVDLPAPSNISVWWNFGSLLGLCLISQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAVPYVGGTLVQWIWGGFSVDNATLTRFFAFHFLLPFIVAAMTMLHLLFLHETGSNNPLGLNSDTDKISFHPYFSYKDLLGFAAVIILLTCLALFTPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 287

[Close]

BLAST of CV885517 vs. ExPASy Swiss-Prot
Match: CYB_LAMGT (Cytochrome b OS=Lampris guttatus GN=mt-cyb PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.003e-44
Identity = 108/270 (40.00%), Postives = 132/270 (48.89%), Query Frame = 1

Query:    4 ILNLPTPARIRFI*NFGSLLIICLINQILTGLFLAFHYKTDINLAFQXXXXXXXXXXFG*LIRSFHANGASXXXXXXXXXXXXXXXXNSFNFKXXXXXXXXXXXXXXXXAFVGYVLP*GQISF*GATVITNLLSAIPYLXXXXXXXXXXXXXXXXATLTRXXXXXXXXXXXXXXXXXXXXXXXXXTGSNNPLGINRNFDKITFSPYXXXXXXXXXXXXXXXXXXXXXXXXXXXNDHNNFIIANPIITPNHIQPE*YFLFSYSILRAIPNK 813
            +++LP P+ I    NFGSLL +CL +QILTGLFLA HY +DI+ AF           +G  IRS HANGAS                 S+ +K                AFVGYVLP GQ+SF GATVITNLLSAIPY+                ATLTR                         TGSNNP G+N + DK++F PY                            D +NFI ANP++TP HI+PE YFLF+Y+ILR+IPNK
Sbjct:   18 VIDLPAPSNISVWWNFGSLLGLCLFSQILTGLFLAMHYTSDISTAFSSVVHTCRDVNYGWFIRSLHANGASFFFICIYLHIARGLYYGSYLYKETWTIGVVLLGLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGGTLVQWIWGGFSVDNATLTRFFTFHFLLPFIIAAATLVHLLFLHETGSNNPTGLNSDADKVSFHPYFSYKDLLGFLALLSALTSLALFSPNLLGDPDNFIPANPLVTPPHIKPEWYFLFAYAILRSIPNK 287

[Close]

BLAST of CV885517 vs. ExPASy Swiss-Prot
Match: CYB_CARCH (Cytochrome b OS=Carcharodon carcharias GN=mt-cyb PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.003e-44
Identity = 107/270 (39.63%), Postives = 131/270 (48.52%), Query Frame = 1

Query:    4 ILNLPTPARIRFI*NFGSLLIICLINQILTGLFLAFHYKTDINLAFQXXXXXXXXXXFG*LIRSFHANGASXXXXXXXXXXXXXXXXNSFNFKXXXXXXXXXXXXXXXXAFVGYVLP*GQISF*GATVITNLLSAIPYLXXXXXXXXXXXXXXXXATLTRXXXXXXXXXXXXXXXXXXXXXXXXXTGSNNPLGINRNFDKITFSPYXXXXXXXXXXXXXXXXXXXXXXXXXXXNDHNNFIIANPIITPNHIQPE*YFLFSYSILRAIPNK 813
            +++LP P+ I    NFGSLL +CL+ QI+TGLFLA HY  DI +AF           +G LIR+ HANGAS                 S+ +K                AFVGYVLP GQ+SF GATVITNLLSA PY+                ATLTR                         TGSNNP+G+N + DKI+F PY                            D  NFI ANP++TP HI+PE YFLF+Y+ILR+IPNK
Sbjct:   19 LIDLPAPSNISIWWNFGSLLGLCLVIQIVTGLFLAMHYTADITMAFSSVTHICRDVNYGWLIRNIHANGASLFFVCIYFHIARGLYYGSYLYKETWNIGVILLFLLMATAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFLITALMIIHILFLHETGSNNPMGLNSDMDKISFHPYFIYKDALGFLSLLILLGILALFLPNLLGDTENFIPANPLVTPPHIKPEWYFLFAYAILRSIPNK 288

[Close]

BLAST of CV885517 vs. ExPASy Swiss-Prot
Match: CYB_PUNCO (Cytochrome b OS=Puntius conchonius GN=mt-cyb PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.310e-44
Identity = 108/270 (40.00%), Postives = 132/270 (48.89%), Query Frame = 1

Query:    4 ILNLPTPARIRFI*NFGSLLIICLINQILTGLFLAFHYKTDINLAFQXXXXXXXXXXFG*LIRSFHANGASXXXXXXXXXXXXXXXXNSFNFKXXXXXXXXXXXXXXXXAFVGYVLP*GQISF*GATVITNLLSAIPYLXXXXXXXXXXXXXXXXATLTRXXXXXXXXXXXXXXXXXXXXXXXXXTGSNNPLGINRNFDKITFSPYXXXXXXXXXXXXXXXXXXXXXXXXXXXNDHNNFIIANPIITPNHIQPE*YFLFSYSILRAIPNK 813
            +++LP P+ I    NFGSLL +CLI QILTGLFLA HY +DI+ AF           +G LIR+ HANGAS                 S+ +K                AFVGYVLP GQ+SF GATVITNLLSA+PY+                ATLTR                         TGSNNP+G+N + DKI+F PY                            D  NF  ANP++TP HI+PE YFLF+Y+ILR+IPNK
Sbjct:   18 LVDLPAPSNISSWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVMHICRDVNYGWLIRNMHANGASFFFICIYMHVARGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDMLVQWIWGGFSVDNATLTRFFAFHFLLPFIVAAMTILHLLFLHETGSNNPIGLNSDADKISFHPYFTYKDLLGFAVMLLALTMLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNK 287

[Close]

BLAST of CV885517 vs. ExPASy Swiss-Prot
Match: CYB_NEORH (Cytochrome b OS=Neocyttus rhomboidalis GN=mt-cyb PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.310e-44
Identity = 111/270 (41.11%), Postives = 131/270 (48.52%), Query Frame = 1

Query:    4 ILNLPTPARIRFI*NFGSLLIICLINQILTGLFLAFHYKTDINLAFQXXXXXXXXXXFG*LIRSFHANGASXXXXXXXXXXXXXXXXNSFNFKXXXXXXXXXXXXXXXXAFVGYVLP*GQISF*GATVITNLLSAIPYLXXXXXXXXXXXXXXXXATLTRXXXXXXXXXXXXXXXXXXXXXXXXXTGSNNPLGINRNFDKITFSPYXXXXXXXXXXXXXXXXXXXXXXXXXXXNDHNNFIIANPIITPNHIQPE*YFLFSYSILRAIPNK 813
            +++LPTP  I    NFGSLL +CLI QILTGLFLA HY  DI  AF           +G LIR+FHANGAS                 S+ +K                AFVGYVLP GQ+SF GATVITNLLSA+PY+                ATLTR                         TGS+NP GI+ N DKI F PY                            D +NFI ANP++TP HI+PE YFLF+Y+ILR+IPNK
Sbjct:   18 LVDLPTPINISTWWNFGSLLGLCLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNYGWLIRNFHANGASFFFICLYLHVGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFIIAAMVILHLLFLHETGSSNPTGISSNADKIPFHPYFTYKDLFGFVILLLALSVLALFSPNLLGDPDNFIPANPLVTPPHIKPEWYFLFAYAILRSIPNK 287

[Close]

BLAST of CV885517 vs. ExPASy Swiss-Prot
Match: CYB_CARPO (Cytochrome b OS=Carcharhinus porosus GN=mt-cyb PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.310e-44
Identity = 110/270 (40.74%), Postives = 131/270 (48.52%), Query Frame = 1

Query:    4 ILNLPTPARIRFI*NFGSLLIICLINQILTGLFLAFHYKTDINLAFQXXXXXXXXXXFG*LIRSFHANGASXXXXXXXXXXXXXXXXNSFNFKXXXXXXXXXXXXXXXXAFVGYVLP*GQISF*GATVITNLLSAIPYLXXXXXXXXXXXXXXXXATLTRXXXXXXXXXXXXXXXXXXXXXXXXXTGSNNPLGINRNFDKITFSPYXXXXXXXXXXXXXXXXXXXXXXXXXXXNDHNNFIIANPIITPNHIQPE*YFLFSYSILRAIPNK 813
            +++LP P+ I    NFGS L +CLI QILTGLFLA HY  DI++AF           +G LIR+ HANGAS                 S+ +K                AFVGYVLP GQ+SF GATVITNLLSA PY+                ATLTR                         TGSNNPLGIN + DKI+F PY                            D  NFI ANP++TP HI+PE YFLF+Y+ILR+IPNK
Sbjct:   19 LVDLPAPSNISLWWNFGSHLGLCLIIQILTGLFLAMHYTADISMAFSSVVHICRDVNYGWLIRNIHANGASLFFICVYLHIARGLYYGSYLYKETWNIGVILLFLLMATAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDMLVQWIWGGFSVDNATLTRFFAFHFLLPFLILALTVIHLLFLHETGSNNPLGINSDADKISFHPYFSYKDLLGFFVMIFFLAALALFMPNLLGDAENFIPANPLVTPPHIKPEWYFLFAYAILRSIPNK 288

The following BLAST results are available for this feature:

BLAST of CV885517 vs. ExPASy Swiss-Prot

BLAST of CV885517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CYB_ANGRO	7.677e-45	40.37	Cytochrome b OS=Anguilla rostrata GN=mt-cyb PE=3 S...	[more]
CYB_ANGRE	7.677e-45	40.37	Cytochrome b OS=Anguilla reinhardtii GN=mt-cyb PE=...	[more]
CYB_ANGMO	7.677e-45	40.37	Cytochrome b OS=Anguilla mossambica GN=mt-cyb PE=3...	[more]
CYB_TYPNA	1.003e-44	39.63	Cytochrome b OS=Typhlonectes natans GN=mt-cyb PE=3...	[more]
CYB_PAGMA	1.003e-44	40.37	Cytochrome b OS=Pagrus major GN=mt-cyb PE=3 SV=1	[more]
CYB_LAMGT	1.003e-44	40.00	Cytochrome b OS=Lampris guttatus GN=mt-cyb PE=3 SV...	[more]
CYB_CARCH	1.003e-44	39.63	Cytochrome b OS=Carcharodon carcharias GN=mt-cyb P...	[more]
CYB_PUNCO	1.310e-44	40.00	Cytochrome b OS=Puntius conchonius GN=mt-cyb PE=3 ...	[more]
CYB_NEORH	1.310e-44	41.11	Cytochrome b OS=Neocyttus rhomboidalis GN=mt-cyb P...	[more]
CYB_CARPO	1.310e-44	40.74	Cytochrome b OS=Carcharhinus porosus GN=mt-cyb PE=...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS04_2_016B06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T3_B06, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV885517 ID=CV885517; Name=CV885517; organism=Citrus sinensis; type=EST; length=883bp
CCAATATTAAATTTACCAACACCTGCCAGAATTAGATTTATATGAAATTT
TGGATCTTTACTAATAATTTGTTTAATTAACCAAATTTTAACAGGTTTAT
TTTTAGCATTCCATTATAAAACAGATATTAATTTAGCATTTCAAAGAATT
ATTAATATAAACCGTAATATTAATTTTGGATGATTAATTCGATCTTTTCA
TGCTAATGGAGCATCAATATTTTTTATTATAATTTATATTCATATTAGAC
GAGGAATTTATATAAACTCTTTTAATTTTAAAATAACTTGAATTATCGGA
GTAATATTATTATTACTAACAATAATAACAGCTTTTGTAGGATATGTATT
ACCTTGAGGACAAATATCATTTTGAGGAGCAACAGTAATTACAAATCTCT
TATCAGCAATTCCTTATTTAGGAAATTCAATTGTTATTTGAATCTGAGGA
GGATTTTCTATTAATAATGCAACTTTAACACGATTTTTTTCAATTCATTT
TATTTTACCATTTATTATTATCTTATTTACATTTATTCATCTATTTTTTT
TACATATAACAGGATCAAATAATCCTTTAGGAATTAATAGAAATTTTGAT
AAAATTACTTTTTCACCATATTTTTTAATTAAAGATTTAATTGGATTAAT
CATATTTATATGAATATTTTTAATTTTAACCTTAATTTTTCCATATCTTC
TTAATGATCATAATAATTTTATTATAGCAAATCCAATAATTACCCCTAAC
CATATTCAACCAGAATGATATTTCTTATTTTCTTATTCAATTTTACGAGC
AATTCCAAATAAACTAGGAGGAGTCATTGCATTAATATTATCAATTTTAA
TTTTATTAGTATTACCTATATTAAATAACAAAA