CV885510

Overview
NameCV885510
Unique NameCV885510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885510 vs. ExPASy Swiss-Prot
Match: ERA_STRPN (GTP-binding protein era homolog OS=Streptococcus pneumoniae GN=era PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.331e-25
Identity = 69/221 (31.22%), Postives = 125/221 (56.56%), Query Frame = -3
Query:  260 VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYK-TRPTAKDFIQVKVKENWRQDEGLLKHYGYGG 919
            +++K QTTR++I+GI +  + Q++  DTPGI + K  + D  M+++  S     D ++ +V A +A  + D+++ E +     K+P++LV+NK D + P ++  +++ +    D  E++P+SA  G+ V  + D +   L  G  Y+P D +++HPERF V E++REK+    R E+P++  V V S K    T K  I+  +       +G++   G GG
Sbjct:   33 MSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPKTALGD-FMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERL--KAAKVPVILVVNKIDKVHPDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDHPERFLVSEMVREKVLHLTREEIPHSVAVVVDSMKRDEETDKVHIRATIMVERDSQKGII--IGKGG 248          
BLAST of CV885510 vs. ExPASy Swiss-Prot
Match: ERA_STRPJ (GTP-binding protein era homolog OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=era PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.331e-25
Identity = 69/221 (31.22%), Postives = 125/221 (56.56%), Query Frame = -3
Query:  260 VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYK-TRPTAKDFIQVKVKENWRQDEGLLKHYGYGG 919
            +++K QTTR++I+GI +  + Q++  DTPGI + K  + D  M+++  S     D ++ +V A +A  + D+++ E +     K+P++LV+NK D + P ++  +++ +    D  E++P+SA  G+ V  + D +   L  G  Y+P D +++HPERF V E++REK+    R E+P++  V V S K    T K  I+  +       +G++   G GG
Sbjct:   33 MSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPKTALGD-FMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERL--KAAKVPVILVVNKIDKVHPDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDHPERFLVSEMVREKVLHLTREEIPHSVAVVVDSMKRDEETDKVHIRATIMVERDSQKGII--IGKGG 248          
BLAST of CV885510 vs. ExPASy Swiss-Prot
Match: ERA_STRPI (GTP-binding protein era homolog OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=era PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.331e-25
Identity = 69/221 (31.22%), Postives = 125/221 (56.56%), Query Frame = -3
Query:  260 VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYK-TRPTAKDFIQVKVKENWRQDEGLLKHYGYGG 919
            +++K QTTR++I+GI +  + Q++  DTPGI + K  + D  M+++  S     D ++ +V A +A  + D+++ E +     K+P++LV+NK D + P ++  +++ +    D  E++P+SA  G+ V  + D +   L  G  Y+P D +++HPERF V E++REK+    R E+P++  V V S K    T K  I+  +       +G++   G GG
Sbjct:   33 MSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPKTALGD-FMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERL--KAAKVPVILVVNKIDKVHPDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDHPERFLVSEMVREKVLHLTREEIPHSVAVVVDSMKRDEETDKVHIRATIMVERDSQKGII--IGKGG 248          
BLAST of CV885510 vs. ExPASy Swiss-Prot
Match: ERA_STRP7 (GTP-binding protein era homolog OS=Streptococcus pneumoniae (strain 70585) GN=era PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.331e-25
Identity = 69/221 (31.22%), Postives = 125/221 (56.56%), Query Frame = -3
Query:  260 VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYK-TRPTAKDFIQVKVKENWRQDEGLLKHYGYGG 919
            +++K QTTR++I+GI +  + Q++  DTPGI + K  + D  M+++  S     D ++ +V A +A  + D+++ E +     K+P++LV+NK D + P ++  +++ +    D  E++P+SA  G+ V  + D +   L  G  Y+P D +++HPERF V E++REK+    R E+P++  V V S K    T K  I+  +       +G++   G GG
Sbjct:   33 MSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPKTALGD-FMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERL--KAAKVPVILVVNKIDKVHPDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDHPERFLVSEMVREKVLHLTREEIPHSVAVVVDSMKRDEETDKVHIRATIMVERDSQKGII--IGKGG 248          
BLAST of CV885510 vs. ExPASy Swiss-Prot
Match: ERA_STRP2 (GTP-binding protein era homolog OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=era PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.331e-25
Identity = 69/221 (31.22%), Postives = 125/221 (56.56%), Query Frame = -3
Query:  260 VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYK-TRPTAKDFIQVKVKENWRQDEGLLKHYGYGG 919
            +++K QTTR++I+GI +  + Q++  DTPGI + K  + D  M+++  S     D ++ +V A +A  + D+++ E +     K+P++LV+NK D + P ++  +++ +    D  E++P+SA  G+ V  + D +   L  G  Y+P D +++HPERF V E++REK+    R E+P++  V V S K    T K  I+  +       +G++   G GG
Sbjct:   33 MSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPKTALGD-FMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERL--KAAKVPVILVVNKIDKVHPDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLDEGFQYFPSDQITDHPERFLVSEMVREKVLHLTREEIPHSVAVVVDSMKRDEETDKVHIRATIMVERDSQKGII--IGKGG 248          
BLAST of CV885510 vs. ExPASy Swiss-Prot
Match: ERA_STRZJ (GTP-binding protein era homolog OS=Streptococcus pneumoniae (strain JJA) GN=era PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.219e-24
Identity = 69/221 (31.22%), Postives = 125/221 (56.56%), Query Frame = -3
Query:  260 VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYK-TRPTAKDFIQVKVKENWRQDEGLLKHYGYGG 919
            +++K QTTR++I+GI +  + Q++  DTPGI + K  + D  M+++  S     D ++ +V A +A  + D+++ E +     K+P++LV+NK D + P ++  +++ +    D  E++P+SA  G+ V  + D +   L  G  Y+P D +++HPERF V E++REK+    R E+P++  V V S K    T K  I+  +       +G++   G GG
Sbjct:   33 MSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPKTALGD-FMVESAYSTLREVDTVLFMVPADEARGKGDDMIIERL--KAAKVPVILVVNKIDKVHPDQLLSQIDDFRNQMDFKEIVPISALQGNNVSRLVDILSENLGEGFQYFPSDQITDHPERFLVSEMVREKVLHLTREEIPHSVAVVVDSMKRDEETDKVHIRATIMVERDSQKGII--IGKGG 248          
BLAST of CV885510 vs. ExPASy Swiss-Prot
Match: ERA_STRMU (GTP-binding protein era homolog OS=Streptococcus mutans GN=era PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.219e-24
Identity = 64/214 (29.91%), Postives = 123/214 (57.48%), Query Frame = -3
Query:  281 VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSY-KTRPTAKDFIQVKVKENWRQDEGLL 919
            +++K QTTR++I+GI +  + Q++  DTPGI + K  + D  M+++  S     D ++ +V A +   + D ++ E +     K+P++LV+NK D + P ++ ++++ +    D  E++P+SA  G+ V  + D ++  L  G  Y+P D +++HPERF V E+IREK+ +  R E+P++  V + S  +   T K  I+  +       +G++
Sbjct:   33 MSDKAQTTRNKIMGIYTTDKEQIVFIDTPGIHKPKTALGD-FMVESAYSTLREVDTVLFMVPADEKRGKGDNMIIERL--KAAKVPVILVINKIDKVHPNQLLEQIDDFRNQMDFQEIVPISALQGNNVSHLVDLLVDHLEEGFQYFPADQITDHPERFLVSEMIREKVLLLTREEIPHSVAVVIDSMARDEETHKIHIRATIMVERDSQKGII 243          
BLAST of CV885510 vs. ExPASy Swiss-Prot
Match: ERA_SYNAS (GTP-binding protein era homolog OS=Syntrophus aciditrophicus (strain SB) GN=era PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.079e-24
Identity = 70/206 (33.98%), Postives = 115/206 (55.83%), Query Frame = -3
Query:  305 VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVKVKEN 919
            +T+KPQTTR+RI+GI +    Q I  DTPGI       L+ +M++       ++D ++++V+A +A    D  + E +   K+   I  L+LNK DLI+  ++   ++ Y       E+IP+SA  G G+  + D +   LP GP Y+P D++++  ERF   EIIREKI +    E+PY+  V V ++K    A++ I++    N
Sbjct:   43 ITHKPQTTRNRIMGIRNADNAQFIFVDTPGIHSASTP-LNRLMVRTATETFTDSDILLLVVEAGQAVHPEDLPIIESL---KESGTISFLILNKIDLIRKEQLLPLMDAYRNLHSFAELIPISALTGEGIPLLLDELWKYLPEGPQYFPDDMMTDQSERFLAAEIIREKILLLTHKEIPYSSAVVVDAFK-EDEARNLIRISATIN 243          
BLAST of CV885510 vs. ExPASy Swiss-Prot
Match: ERA_CLOK5 (GTP-binding protein era homolog OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=era PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.079e-24
Identity = 79/264 (29.92%), Postives = 126/264 (47.73%), Query Frame = -3
Query:  266 VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYK--------------------------------------TRPTAKDFIQ--------VKVKENWRQDEGLLKHYGY 919
            V+ KPQTTR+ I  I +  ++Q+I  DTPGI + K H L + M+K   S+  + D I+ L+       + D  + E +   K+ +P+ LV+NK D     ++A+ L+ Y +  D  E+IP+SA     V+++ + ++  +P GP YYP D++++  E+F V EIIREK       EVP+   V+++S K                                       R   + F+         VKVK+ WR  + LLK  GY
Sbjct:   32 VSCKPQTTRNSIQTILTRDDFQLIFVDTPGIHKPK-HKLGNYMVKVAESSVKDVDLILFLITPDVEVGKGDRYILEQL--KKENIPVFLVVNKIDENPQEKVAQTLKNYSEIFDFAEIIPISALKQKNVKELVELMVKYMPEGPKYYPDDMITDKQEKFVVSEIIREKALRLLSKEVPHGIAVDILSMKKNSKGLYNIEATILCEKESHKGIIIGKKGAMLKKISTYAREDIEKFLDSKVYLEVWVKVKKEWRDSDRLLKELGY 292          
BLAST of CV885510 vs. ExPASy Swiss-Prot
Match: ERA_CLOK1 (GTP-binding protein era homolog OS=Clostridium kluyveri (strain NBRC 12016) GN=era PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.079e-24
Identity = 79/264 (29.92%), Postives = 126/264 (47.73%), Query Frame = -3
Query:  266 VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYK--------------------------------------TRPTAKDFIQ--------VKVKENWRQDEGLLKHYGY 919
            V+ KPQTTR+ I  I +  ++Q+I  DTPGI + K H L + M+K   S+  + D I+ L+       + D  + E +   K+ +P+ LV+NK D     ++A+ L+ Y +  D  E+IP+SA     V+++ + ++  +P GP YYP D++++  E+F V EIIREK       EVP+   V+++S K                                       R   + F+         VKVK+ WR  + LLK  GY
Sbjct:   32 VSCKPQTTRNSIQTILTRDDFQLIFVDTPGIHKPK-HKLGNYMVKVAESSVKDVDLILFLITPDVEVGKGDRYILEQL--KKENIPVFLVVNKIDENPQEKVAQTLKNYSEIFDFAEIIPISALKQKNVKELVELMVKYMPEGPKYYPDDMITDKQEKFVVSEIIREKALRLLSKEVPHGIAVDILSMKKNSKGLYNIEATILCEKESHKGIIIGKKGAMLKKISTYAREDIEKFLDSKVYLEVWVKVKKEWRDSDRLLKELGY 292          
The following BLAST results are available for this feature:
BLAST of CV885510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 310
Match NameE-valueIdentityDescription
ERA_STRPN9.331e-2531.22GTP-binding protein era homolog OS=Streptococcus p... [more]
ERA_STRPJ9.331e-2531.22GTP-binding protein era homolog OS=Streptococcus p... [more]
ERA_STRPI9.331e-2531.22GTP-binding protein era homolog OS=Streptococcus p... [more]
ERA_STRP79.331e-2531.22GTP-binding protein era homolog OS=Streptococcus p... [more]
ERA_STRP29.331e-2531.22GTP-binding protein era homolog OS=Streptococcus p... [more]
ERA_STRZJ1.219e-2431.22GTP-binding protein era homolog OS=Streptococcus p... [more]
ERA_STRMU1.219e-2429.91GTP-binding protein era homolog OS=Streptococcus m... [more]
ERA_SYNAS2.079e-2433.98GTP-binding protein era homolog OS=Syntrophus acid... [more]
ERA_CLOK52.079e-2429.92GTP-binding protein era homolog OS=Clostridium klu... [more]
ERA_CLOK12.079e-2429.92GTP-binding protein era homolog OS=Clostridium klu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_016B01_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T7_B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885510 ID=CV885510; Name=CV885510; organism=Citrus sinensis; type=EST; length=921bp
TTTTTTTTTTTTTTTTTGGGAGTTAAAAGACATTAATTGTCCAAGATCAC
ATCATAGATGATATGAATCATCTTTAACAAAACACTAACACATACAAAAT
CAATATGGGAGGATTCTATACTAGTCAACAAAATTGAGAGCTATTTCCTC
TTTTTGTCATTTTTTTCTACAATGACCGGACCACCTTGACTTACCTAGTG
GGAAATGGGTCAATTGTGATGAAACTTCACCATCATACAATTCACAATGC
TTGAATTTGGCCCCCATAACCATAGTGCTTCAAAAGTCCTTCGTCTTGCC
GCCAATTCTCTTTTACTTTTACTTGTATAAAATCTTTGGCAGTTGGCCTA
GTTTTGTAACTTACAACATTGACTTGACATGCATAAGGAACCTCATTGCG
GTATTGCATAAAGATCTTCTCTCTAATAATCTCACCTACAAAGAATCTTT
CTGGGTGCTCACTAACAATGTCCTTTGGATAATAAGCTGGGCCAAGTGGA
AGTTTGGTCAATATCCAATCCCTGATATCTTCCACTCCATGACCATATTT
TGCACTCACGGGTATGACCTCATCAACATCTGTAAATTTCTCATACCACT
CAAGCTTTTTAGCAATTTCACCAGGCTTGATCAGATCCTTCTTATTCAGT
ACCAACAAAATAGGCAATTTATCTTTGTGGTCTCCCACTCCCTCTTCCAA
AATTTCATCAATTCTTTCAGGAGCTTTACAAGCATCAACGAGAACAACAA
TACAGTCAGCGTTAATCCCAGCACTGCGGACATTCTTCATCATCATAGAG
TCCAACATGTGAATTTTCTTCTCAATTATACCAGGGGTATCATAAAGTAT
CATCTGATACTCTGGACCAGAACAGATACCAAGAATACGGTGCCTTGTAG
TTTGGGGCTTATTTGTAACAA
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